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Search of human proteins with 239748886
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748886 PREDICTED: similar to hCG1817096 [Homo sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748886 PREDICTED: similar to hCG1817096 [Homo sapiens] 244 1e-65
gi|239756558 PREDICTED: similar to vomeronasal 1 receptor, C3 [H... 127 2e-30
gi|169210430 PREDICTED: similar to vomeronasal 1 receptor, C3 [H... 127 3e-30
gi|239745522 PREDICTED: similar to vomeronasal 1 receptor, C3 [H... 127 3e-30
gi|239754592 PREDICTED: hypothetical LOC100129126 [Homo sapiens] 68 2e-12
gi|239749130 PREDICTED: hypothetical LOC100129126 [Homo sapiens] 68 2e-12
gi|239743202 PREDICTED: hypothetical LOC100129126 [Homo sapiens] 68 2e-12
gi|239508877 PREDICTED: hypothetical LOC100129126 [Homo sapiens] 68 2e-12
gi|27777675 vomeronasal 1 receptor 5 [Homo sapiens] 67 4e-12
gi|71361647 vomeronasal 1 receptor 4 [Homo sapiens] 63 6e-11
gi|10190668 vomeronasal 1 receptor 1 [Homo sapiens] 59 1e-09
gi|155029529 vomeronasal 1 receptor 2 [Homo sapiens] 55 2e-08
gi|157151767 FKSG83 [Homo sapiens] 52 1e-07
gi|154937357 taste receptor, type 2, member 50 [Homo sapiens] 32 0.12
gi|148235367 type 2 taste receptor member 30 [Homo sapiens] 31 0.21
gi|170932505 neuromedin U receptor 2 [Homo sapiens] 29 0.79
gi|4503349 deoxyribonuclease II, lysosomal precursor [Homo sapiens] 28 1.8
gi|116235454 taste receptor, type 2, member 31 [Homo sapiens] 28 1.8
gi|4503523 eukaryotic translation initiation factor 3 subunit D ... 28 2.3
gi|116235464 taste receptor, type 2, member 43 [Homo sapiens] 27 3.9
gi|4502817 cholinergic receptor, muscarinic 2 [Homo sapiens] 26 6.7
gi|54792117 cholinergic receptor, muscarinic 2 [Homo sapiens] 26 6.7
gi|54792115 cholinergic receptor, muscarinic 2 [Homo sapiens] 26 6.7
gi|54792113 cholinergic receptor, muscarinic 2 [Homo sapiens] 26 6.7
gi|54792111 cholinergic receptor, muscarinic 2 [Homo sapiens] 26 6.7
gi|54792109 cholinergic receptor, muscarinic 2 [Homo sapiens] 26 6.7
gi|54792107 cholinergic receptor, muscarinic 2 [Homo sapiens] 26 6.7
gi|54792105 cholinergic receptor, muscarinic 2 [Homo sapiens] 26 6.7
gi|31543204 proton-coupled folate transporter [Homo sapiens] 26 6.7
gi|17986270 dopamine receptor D2 isoform short [Homo sapiens] 26 8.7
>gi|239748886 PREDICTED: similar to hCG1817096 [Homo sapiens]
Length = 123
Score = 244 bits (623), Expect = 1e-65
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILF 60
MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILF
Sbjct: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILF 60
Query: 61 TSTLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKIISVMKTVRQKVNKLFLLKTDYS 120
TSTLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKIISVMKTVRQKVNKLFLLKTDYS
Sbjct: 61 TSTLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKIISVMKTVRQKVNKLFLLKTDYS 120
Query: 121 VTT 123
VTT
Sbjct: 121 VTT 123
>gi|239756558 PREDICTED: similar to vomeronasal 1 receptor, C3 [Homo
sapiens]
Length = 275
Score = 127 bits (319), Expect = 2e-30
Identities = 69/104 (66%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILF 60
MLLS MV+LL RH + + HST L PRPSPEK ATQTILLLVS FVV+YWVDFI
Sbjct: 169 MLLSRAYMVILLPRHWRQSQHLHSTHLSPRPSPEKRATQTILLLVSFFVVMYWVDFIFST 228
Query: 61 TSTLLWAYDP-VVLGVQRLVGNVYATVSPFVLLRSDKKIISVMK 103
+ TLLW YDP VVL VQR V N YATVSP V + SDK IIS+M+
Sbjct: 229 SLTLLWTYDPHVVLSVQRAVLNAYATVSPLVQISSDKTIISIMQ 272
>gi|169210430 PREDICTED: similar to vomeronasal 1 receptor, C3 [Homo
sapiens]
Length = 275
Score = 127 bits (318), Expect = 3e-30
Identities = 69/104 (66%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILF 60
MLLS MV+LL RH + + HST L PRPSPEK ATQTILLLVS FVV+YWVDFI
Sbjct: 169 MLLSRAYMVILLPRHWRQSQHLHSTHLSPRPSPEKRATQTILLLVSFFVVMYWVDFIFST 228
Query: 61 TSTLLWAYDP-VVLGVQRLVGNVYATVSPFVLLRSDKKIISVMK 103
+ TLLW YDP VVL VQR V N YATVSP V + SDK IIS+M+
Sbjct: 229 SLTLLWPYDPHVVLSVQRAVLNAYATVSPLVQISSDKTIISIMQ 272
>gi|239745522 PREDICTED: similar to vomeronasal 1 receptor, C3 [Homo
sapiens]
Length = 275
Score = 127 bits (318), Expect = 3e-30
Identities = 69/104 (66%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILF 60
MLLS MV+LL RH + + HST L PRPSPEK ATQTILLLVS FVV+YWVDFI
Sbjct: 169 MLLSRAYMVILLPRHWRQSQHLHSTHLSPRPSPEKRATQTILLLVSFFVVMYWVDFIFST 228
Query: 61 TSTLLWAYDP-VVLGVQRLVGNVYATVSPFVLLRSDKKIISVMK 103
+ TLLW YDP VVL VQR V N YATVSP V + SDK IIS+M+
Sbjct: 229 SLTLLWPYDPHVVLSVQRAVLNAYATVSPLVQISSDKTIISIMQ 272
>gi|239754592 PREDICTED: hypothetical LOC100129126 [Homo sapiens]
Length = 190
Score = 68.2 bits (165), Expect = 2e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLL 44
MLLSS MVVLL HQ K WY HST L PRPSPE+SATQTILLL
Sbjct: 83 MLLSSAYMVVLLLSHQKKSWYLHSTCLSPRPSPEQSATQTILLL 126
>gi|239749130 PREDICTED: hypothetical LOC100129126 [Homo sapiens]
Length = 190
Score = 68.2 bits (165), Expect = 2e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLL 44
MLLSS MVVLL HQ K WY HST L PRPSPE+SATQTILLL
Sbjct: 83 MLLSSAYMVVLLLSHQKKSWYLHSTCLSPRPSPEQSATQTILLL 126
>gi|239743202 PREDICTED: hypothetical LOC100129126 [Homo sapiens]
Length = 190
Score = 68.2 bits (165), Expect = 2e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLL 44
MLLSS MVVLL HQ K WY HST L PRPSPE+SATQTILLL
Sbjct: 83 MLLSSAYMVVLLLSHQKKSWYLHSTCLSPRPSPEQSATQTILLL 126
>gi|239508877 PREDICTED: hypothetical LOC100129126 [Homo sapiens]
Length = 190
Score = 68.2 bits (165), Expect = 2e-12
Identities = 34/44 (77%), Positives = 35/44 (79%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLL 44
MLLSS MVVLL HQ K WY HST L PRPSPE+SATQTILLL
Sbjct: 83 MLLSSAYMVVLLLSHQKKSWYLHSTCLSPRPSPEQSATQTILLL 126
>gi|27777675 vomeronasal 1 receptor 5 [Homo sapiens]
Length = 357
Score = 66.6 bits (161), Expect = 4e-12
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 29 PRPSPEKSATQTILLLVSIFVVIYWVDFIILFTSTLLWAYDPVVLGVQRLVGNVYATVSP 88
PR SP K A+Q ILLLVS FV YWVDF F+ + W D +++ +Q +V N YA +SP
Sbjct: 259 PRVSPVKRASQAILLLVS-FVFTYWVDFTFSFSGGVTWINDSLLVWLQVIVANSYAAISP 317
Query: 89 FVLLRSDKKIISVMK 103
+L+ +D +I ++
Sbjct: 318 LMLIYADNQIFKTLQ 332
>gi|71361647 vomeronasal 1 receptor 4 [Homo sapiens]
Length = 301
Score = 62.8 bits (151), Expect = 6e-11
Identities = 35/98 (35%), Positives = 55/98 (56%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILF 60
ML S+ MV +L RH+ + + ++L PR SPE ATQ+IL+LVS FV Y + +
Sbjct: 195 MLWVSSSMVCILHRHKQRVQHIDRSNLSPRASPENRATQSILILVSTFVSSYTLSCLFQV 254
Query: 61 TSTLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKI 98
LL + +++ L+ + T+SPFVL+ D +
Sbjct: 255 CMALLDNPNSLLVNTSALMSVCFPTLSPFVLMSCDPSV 292
>gi|10190668 vomeronasal 1 receptor 1 [Homo sapiens]
Length = 353
Score = 58.5 bits (140), Expect = 1e-09
Identities = 36/98 (36%), Positives = 53/98 (54%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILF 60
M+ +S MV L+RH+ + + HS L RPS E AT TI++LVS F V Y V +
Sbjct: 235 MVWASGSMVFFLYRHKQQVQHNHSNRLSCRPSQEARATHTIMVLVSSFFVFYSVHSFLTI 294
Query: 61 TSTLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKI 98
+T++ ++ LV + + SPFVL+ SD I
Sbjct: 295 WTTVVANPGQWIVTNSVLVASCFPARSPFVLIMSDTHI 332
>gi|155029529 vomeronasal 1 receptor 2 [Homo sapiens]
Length = 395
Score = 54.7 bits (130), Expect = 2e-08
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 10/100 (10%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFI--- 57
ML +S+ +V++L+RH+ + + +L+P SP A Q+IL LVS F + Y + FI
Sbjct: 277 MLWASSSIVLVLYRHKQQVQHICRNNLYPNSSPGNRAIQSILALVSTFALCYALSFITYV 336
Query: 58 --ILFTSTLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSD 95
LF ++ W ++ L+ + T+SPFVL+ D
Sbjct: 337 YLALFDNSSWW-----LVNTAALIIACFPTISPFVLMCRD 371
>gi|157151767 FKSG83 [Homo sapiens]
Length = 189
Score = 51.6 bits (122), Expect = 1e-07
Identities = 27/98 (27%), Positives = 47/98 (47%)
Query: 1 MLLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILF 60
M+ +S MV + RHQ ++ HS SL P+ PE A+ LLVS FV Y + +
Sbjct: 53 MIWTSFYMVTIFLRHQKTVFHIHSISLSPQSFPETEASHVFFLLVSRFVFFYGTNVCLST 112
Query: 61 TSTLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKI 98
+ ++ ++ + V + Y + +L+ D K+
Sbjct: 113 YISSMYENSLILENITSFVSSSYPIICTLILINYDNKV 150
>gi|154937357 taste receptor, type 2, member 50 [Homo sapiens]
Length = 299
Score = 32.0 bits (71), Expect = 0.12
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 2 LLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILFT 61
L+S ++ L +H K S A QT++ + + I+++ I+
Sbjct: 192 LISFLMLICSLCKHLKKMQLHGEGSQDLSTKVHIKALQTLISFL-LLCAIFFLFLIVSVW 250
Query: 62 STLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKI 98
S DPVV+ V + VGN+Y F+L+ KK+
Sbjct: 251 SPRRLRNDPVVM-VSKAVGNIYLAFDSFILIWRTKKL 286
>gi|148235367 type 2 taste receptor member 30 [Homo sapiens]
Length = 319
Score = 31.2 bits (69), Expect = 0.21
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 2 LLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILFT 61
L+S ++ L +H K S P A QT+ + + IY++ II
Sbjct: 192 LISFLLLICSLCKHLKKMQLHGKGSQDPSTKVHIKALQTVTSFL-LLCAIYFLSMIISVC 250
Query: 62 STLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKI----ISVMKTVR 106
+ PV + Q ++ + Y + PF+L+ +KK+ +SV++ VR
Sbjct: 251 NFGRLEKQPVFMFCQAIIFS-YPSTHPFILILGNKKLKQIFLSVLRHVR 298
>gi|170932505 neuromedin U receptor 2 [Homo sapiens]
Length = 415
Score = 29.3 bits (64), Expect = 0.79
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 15 HQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILFTSTLLWAYDPVVLG 74
H +KF YF + SL P SAT T++ + I+ +FII TS L + V+
Sbjct: 185 HGIKFHYFPNGSLVP-----GSATCTVIKPMWIY------NFIIQVTSFLFYLLPMTVIS 233
Query: 75 VQRLVGNVYATVSPFVLLRSDKKIISVMKTVRQKVNK-LFLLKTDYSV 121
V L + + L +D+ ++ + R+ VNK LF+L +++
Sbjct: 234 V--LYYLMALRLKKDKSLEADEGNANIQRPCRKSVNKMLFVLVLVFAI 279
>gi|4503349 deoxyribonuclease II, lysosomal precursor [Homo sapiens]
Length = 360
Score = 28.1 bits (61), Expect = 1.8
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 10 VLLFRHQMKFWYFHSTSLFPRPS-------PEKSATQTILLLVSIFVVIYWVDFIILFTS 62
VLL H FW HS FP P+ P + T LL F + T
Sbjct: 117 VLLLDHDGGFWLVHSVPNFPPPASSAAYSWPHSACTYGQTLLCVSFPFAQFSKMGKQLTY 176
Query: 63 TLLWAYDPVVLGV 75
T W Y+ + G+
Sbjct: 177 TYPWVYNYQLEGI 189
>gi|116235454 taste receptor, type 2, member 31 [Homo sapiens]
Length = 309
Score = 28.1 bits (61), Expect = 1.8
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 2 LLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILFT 61
LL ++ L +H K S P A QT++ + + +Y++ +I
Sbjct: 192 LLCFLLLICSLCKHLKKMQLHGKGSQDPSTKVHIKALQTVIFFL-LLCAVYFLSIMISVW 250
Query: 62 STLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKI----ISVMKTVR 106
S PV + + + + Y ++ PF+L+ +KK+ +SV++ VR
Sbjct: 251 SFGSLENKPVFMFCKAIRFS-YPSIHPFILIWGNKKLKQTFLSVLRQVR 298
>gi|4503523 eukaryotic translation initiation factor 3 subunit D
[Homo sapiens]
Length = 548
Score = 27.7 bits (60), Expect = 2.3
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 69 DPVVLGVQRLVGNVYATVSPFVLLRSDKKIISVMKTVRQKV-NKLFLLKTDYS 120
DPV+ + + GNV+AT + L S + + V Q+V +KLF K D S
Sbjct: 232 DPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNS 284
>gi|116235464 taste receptor, type 2, member 43 [Homo sapiens]
Length = 309
Score = 26.9 bits (58), Expect = 3.9
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 2 LLSSTCMVVLLFRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVIYWVDFIILFT 61
LLS ++ L +H K S P A QT++ + + IY++ +I
Sbjct: 192 LLSFMLLICSLCKHLKKMQLHGKGSQDPSTKVHIKALQTVISFL-LLCAIYFLSIMISVW 250
Query: 62 STLLWAYDPVVLGVQRLVGNVYATVSPFVLLRSDKKI 98
S PV + + + + Y ++ PF+L+ +KK+
Sbjct: 251 SFGSLENKPVFMFCKAIRFS-YPSIHPFILIWGNKKL 286
>gi|4502817 cholinergic receptor, muscarinic 2 [Homo sapiens]
Length = 466
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 PRPSPEKSATQTILLLVSIFVVIYWVDFIIL 59
P PS EK T+TIL ++ F +I W + ++
Sbjct: 377 PPPSREKKVTRTILAILLAF-IITWAPYNVM 406
>gi|54792117 cholinergic receptor, muscarinic 2 [Homo sapiens]
Length = 466
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 PRPSPEKSATQTILLLVSIFVVIYWVDFIIL 59
P PS EK T+TIL ++ F +I W + ++
Sbjct: 377 PPPSREKKVTRTILAILLAF-IITWAPYNVM 406
>gi|54792115 cholinergic receptor, muscarinic 2 [Homo sapiens]
Length = 466
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 PRPSPEKSATQTILLLVSIFVVIYWVDFIIL 59
P PS EK T+TIL ++ F +I W + ++
Sbjct: 377 PPPSREKKVTRTILAILLAF-IITWAPYNVM 406
>gi|54792113 cholinergic receptor, muscarinic 2 [Homo sapiens]
Length = 466
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 PRPSPEKSATQTILLLVSIFVVIYWVDFIIL 59
P PS EK T+TIL ++ F +I W + ++
Sbjct: 377 PPPSREKKVTRTILAILLAF-IITWAPYNVM 406
>gi|54792111 cholinergic receptor, muscarinic 2 [Homo sapiens]
Length = 466
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 PRPSPEKSATQTILLLVSIFVVIYWVDFIIL 59
P PS EK T+TIL ++ F +I W + ++
Sbjct: 377 PPPSREKKVTRTILAILLAF-IITWAPYNVM 406
>gi|54792109 cholinergic receptor, muscarinic 2 [Homo sapiens]
Length = 466
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 PRPSPEKSATQTILLLVSIFVVIYWVDFIIL 59
P PS EK T+TIL ++ F +I W + ++
Sbjct: 377 PPPSREKKVTRTILAILLAF-IITWAPYNVM 406
>gi|54792107 cholinergic receptor, muscarinic 2 [Homo sapiens]
Length = 466
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 PRPSPEKSATQTILLLVSIFVVIYWVDFIIL 59
P PS EK T+TIL ++ F +I W + ++
Sbjct: 377 PPPSREKKVTRTILAILLAF-IITWAPYNVM 406
>gi|54792105 cholinergic receptor, muscarinic 2 [Homo sapiens]
Length = 466
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 PRPSPEKSATQTILLLVSIFVVIYWVDFIIL 59
P PS EK T+TIL ++ F +I W + ++
Sbjct: 377 PPPSREKKVTRTILAILLAF-IITWAPYNVM 406
>gi|31543204 proton-coupled folate transporter [Homo sapiens]
Length = 459
Score = 26.2 bits (56), Expect = 6.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 13 FRHQMKFWYFHSTSLFPRPSPEKSATQTILLLVSIFVVI 51
FRH L+ P+PEKS L ++IFVVI
Sbjct: 245 FRHHRSI-----VQLYVAPAPEKSRKHLALYSLAIFVVI 278
>gi|17986270 dopamine receptor D2 isoform short [Homo sapiens]
Length = 414
Score = 25.8 bits (55), Expect = 8.7
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 34 EKSATQTILLLVSIFVVIYWVDFIILFTSTLLWAYD--PVVLGVQRLVGNVYATVSPFV 90
EK ATQ + +++ +F +I W+ F I + + PV+ +G V + V+P +
Sbjct: 339 EKKATQMLAIVLGVF-IICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPII 396
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.139 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,865,641
Number of Sequences: 37866
Number of extensions: 129896
Number of successful extensions: 441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 32
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.