Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129126 Sequence: fasta or formatted (190aa) NCBI GI: 239743202
Description:

PREDICTED: hypothetical LOC100129126

Not currently referenced in the text

Other entries for this name:
alt mRNA {190aa} PREDICTED: hypothetical LOC100129126
alt mRNA {190aa} PREDICTED: hypothetical LOC100129126
alt mRNA {190aa} PREDICTED: hypothetical LOC100129126
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          6           1
 C cysteine            1.1          2           1
 D aspartate           3.7          7           1
 E glutamate           5.8         11           2
 F phenylalanine       1.6          3           1
 G glycine             5.3         10           2
 H histidine           4.2          8           1
 I isoleucine          4.2          8           1
 K lysine              3.2          6           2
 L leucine            14.7         28           3
 M methionine          3.7          7           1
 N asparagine          3.7          7           1
 P proline             5.3         10           1
 Q glutamine           5.8         11           1
 R arginine            5.8         11           2
 S serine             11.1         21           2
 T threonine           7.4         14           2
 V valine              6.3         12           2
 W tryptophan          2.1          4           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical LOC100129126 
LOC100129126          1.000   PREDICTED: hypothetical LOC100129126 
LOC100129126          1.000   PREDICTED: hypothetical LOC100129126 
LOC100129126          1.000   PREDICTED: hypothetical LOC100129126 
LOC100294489          0.120   PREDICTED: similar to hCG1817096 
LOC100129315          0.106   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.106   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.106   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
ZNF720                0.075   zinc finger protein 720 
ZNF267                0.070   zinc finger protein 267 
LOC728927             0.064   PREDICTED: similar to hCG40110 
LOC728927             0.064   PREDICTED: similar to hCG40110 
LOC728927             0.064   PREDICTED: hypothetical protein LOC728927 
LOC728927             0.064   PREDICTED: similar to hCG40110 
ZNF540                0.064   zinc finger protein 540 
ZNF727                0.061   zinc finger protein 727 
LOC729806             0.061   PREDICTED: similar to hCG1725380 
LOC729806             0.061   PREDICTED: similar to hCG1725380 
LOC729806             0.061   PREDICTED: similar to hCG1725380 
LOC100294071          0.061   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100128975          0.058   PREDICTED: similar to zinc finger protein 626 [Homo...
LOC100128975          0.058   PREDICTED: similar to zinc finger protein 626 [Homo...
LOC100128975          0.058   PREDICTED: similar to zinc finger protein 626 [Homo...
LOC100133176          0.058   PREDICTED: similar to zinc finger protein 195 [Homo...
LOC100133176          0.058   PREDICTED: similar to zinc finger protein 195 [Homo...
LOC100133176          0.058   PREDICTED: similar to zinc finger protein 195 [Homo...
VN1R4                 0.058   vomeronasal 1 receptor 4 
ZNF140                0.058   zinc finger protein 140 
ZNF716                0.056   zinc finger protein 716 
ZNF679                0.056   zinc finger protein 679 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press