Guide to the Human Genome
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Name: LOC100294489 Sequence: fasta or formatted (123aa) NCBI GI: 239748886
Description:

PREDICTED: similar to hCG1817096

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.4          3           1
 C cysteine            0.8          1           1
 D aspartate           3.3          4           1
 E glutamate           0.8          1           1
 F phenylalanine       7.3          9           1
 G glycine             1.6          2           1
 H histidine           1.6          2           1
 I isoleucine          5.7          7           2
 K lysine              6.5          8           2
 L leucine            14.6         18           3
 M methionine          3.3          4           1
 N asparagine          1.6          2           1
 P proline             4.1          5           1
 Q glutamine           3.3          4           1
 R arginine            4.1          5           1
 S serine              9.8         12           2
 T threonine           8.9         11           2
 V valine             13.8         17           2
 W tryptophan          2.4          3           1
 Y tyrosine            4.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1817096 
LOC100129315          0.466   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.466   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.466   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129126          0.196   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.196   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.196   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.196   PREDICTED: hypothetical LOC100129126 
VN1R5                 0.192   vomeronasal 1 receptor 5 
VN1R4                 0.174   vomeronasal 1 receptor 4 
VN1R1                 0.155   vomeronasal 1 receptor 1 
VN1R2                 0.137   vomeronasal 1 receptor 2 
FKSG83                0.123   FKSG83 
TAS2R50               0.032   taste receptor, type 2, member 50 
TAS2R30               0.027   type 2 taste receptor member 30 
NMUR2                 0.018   neuromedin U receptor 2 
DNASE2                0.014   deoxyribonuclease II, lysosomal precursor 
TAS2R31               0.014   taste receptor, type 2, member 31 
EIF3D                 0.014   eukaryotic translation initiation factor 3 subunit D ...
TAS2R43               0.009   taste receptor, type 2, member 43 
CHRM2                 0.005   cholinergic receptor, muscarinic 2 
CHRM2                 0.005   cholinergic receptor, muscarinic 2 
CHRM2                 0.005   cholinergic receptor, muscarinic 2 
CHRM2                 0.005   cholinergic receptor, muscarinic 2 
CHRM2                 0.005   cholinergic receptor, muscarinic 2 
CHRM2                 0.005   cholinergic receptor, muscarinic 2 
CHRM2                 0.005   cholinergic receptor, muscarinic 2 
CHRM2                 0.005   cholinergic receptor, muscarinic 2 
SLC46A1               0.005   proton-coupled folate transporter 
DRD2                  0.005   dopamine receptor D2 isoform short 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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