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Search of human proteins with 239748362
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748362 PREDICTED: hypothetical protein XP_002346639 [Homo
sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748362 PREDICTED: hypothetical protein XP_002346639 [Homo ... 350 3e-97
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens] 33 0.15
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens] 33 0.15
gi|239753967 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239748506 PREDICTED: hypothetical protein XP_002346707 [Homo ... 32 0.19
gi|239742472 PREDICTED: hypothetical protein XP_002342538 [Homo ... 32 0.19
gi|168693647 endoglin isoform 1 precursor [Homo sapiens] 31 0.56
gi|4557555 endoglin isoform 2 precursor [Homo sapiens] 31 0.56
gi|194328809 latent transforming growth factor beta binding prot... 28 2.8
gi|18497288 latent transforming growth factor beta binding prote... 28 2.8
gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens] 28 3.6
gi|150456460 EPH receptor A10 isofom 3 [Homo sapiens] 28 3.6
gi|14249488 zinc finger and SCAN domain containing 10 [Homo sapi... 28 4.7
gi|239754442 PREDICTED: hypothetical protein [Homo sapiens] 27 6.2
gi|153946393 macrophage stimulating 1 receptor precursor [Homo s... 27 8.0
gi|83816964 Holliday junction recognition protein [Homo sapiens] 27 8.0
gi|21361914 semaphorin B [Homo sapiens] 27 8.0
>gi|239748362 PREDICTED: hypothetical protein XP_002346639 [Homo
sapiens]
Length = 165
Score = 350 bits (898), Expect = 3e-97
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MMEGSSIIIINGRMDGWRVNMCRGPPASLITHLDVEVHQLALPQDVIDLPCLQPGMRLLL 60
MMEGSSIIIINGRMDGWRVNMCRGPPASLITHLDVEVHQLALPQDVIDLPCLQPGMRLLL
Sbjct: 1 MMEGSSIIIINGRMDGWRVNMCRGPPASLITHLDVEVHQLALPQDVIDLPCLQPGMRLLL 60
Query: 61 FLLEVNENPQTSFGVVQCGFVGPGAISVQMLSRPMVLKVRRHHSHPEACPYSLLACPQSF 120
FLLEVNENPQTSFGVVQCGFVGPGAISVQMLSRPMVLKVRRHHSHPEACPYSLLACPQSF
Sbjct: 61 FLLEVNENPQTSFGVVQCGFVGPGAISVQMLSRPMVLKVRRHHSHPEACPYSLLACPQSF 120
Query: 121 WLHGPGAGPRTPTCHKLLGDMDAALLVQGPHFENMALTHWPIFLL 165
WLHGPGAGPRTPTCHKLLGDMDAALLVQGPHFENMALTHWPIFLL
Sbjct: 121 WLHGPGAGPRTPTCHKLLGDMDAALLVQGPHFENMALTHWPIFLL 165
>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
Length = 750
Score = 32.7 bits (73), Expect = 0.15
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 96 VLKVRRHHSHPEACPYSLLACPQSFWLHGPGAGPRTPTCHKLLGDMDAALL 146
V K+ H HPE + + P+ LHGP +T H + G++D +L
Sbjct: 171 VCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPIL 221
>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
Length = 856
Score = 32.7 bits (73), Expect = 0.15
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 96 VLKVRRHHSHPEACPYSLLACPQSFWLHGPGAGPRTPTCHKLLGDMDAALL 146
V K+ H HPE + + P+ LHGP +T H + G++D +L
Sbjct: 277 VCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPIL 327
>gi|239753967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 32.3 bits (72), Expect = 0.19
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 23 RGPPASLITHLDVEVHQLALPQDVIDLPCLQPGMRLLLFLLEVNENPQTSFGVVQCGFVG 82
+GPPA+L+T++ V + P+ + LP LQPG R + + G+ C G
Sbjct: 47 QGPPANLVTYVGVRGAR-QRPEPPLSLPTLQPGSRPPRARVSELSLACRACGLGVCVEPG 105
Query: 83 PGAI 86
PGA+
Sbjct: 106 PGAL 109
>gi|239748506 PREDICTED: hypothetical protein XP_002346707 [Homo
sapiens]
Length = 146
Score = 32.3 bits (72), Expect = 0.19
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 23 RGPPASLITHLDVEVHQLALPQDVIDLPCLQPGMRLLLFLLEVNENPQTSFGVVQCGFVG 82
+GPPA+L+T++ V + P+ + LP LQPG R + + G+ C G
Sbjct: 47 QGPPANLVTYVGVRGAR-QRPEPPLSLPTLQPGSRPPRARVSELSLACRACGLGVCVEPG 105
Query: 83 PGAI 86
PGA+
Sbjct: 106 PGAL 109
>gi|239742472 PREDICTED: hypothetical protein XP_002342538 [Homo
sapiens]
Length = 146
Score = 32.3 bits (72), Expect = 0.19
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 23 RGPPASLITHLDVEVHQLALPQDVIDLPCLQPGMRLLLFLLEVNENPQTSFGVVQCGFVG 82
+GPPA+L+T++ V + P+ + LP LQPG R + + G+ C G
Sbjct: 47 QGPPANLVTYVGVRGAR-QRPEPPLSLPTLQPGSRPPRARVSELSLACRACGLGVCVEPG 105
Query: 83 PGAI 86
PGA+
Sbjct: 106 PGAL 109
>gi|168693647 endoglin isoform 1 precursor [Homo sapiens]
Length = 658
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 122 LHGPGAGPRTPTCHKLL----GDMDAALLVQGPHF 152
L G AGPRT T L GD+DA L++QGP +
Sbjct: 224 LPGHSAGPRTVTVKVELSCAPGDLDAVLILQGPPY 258
>gi|4557555 endoglin isoform 2 precursor [Homo sapiens]
Length = 625
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 122 LHGPGAGPRTPTCHKLL----GDMDAALLVQGPHF 152
L G AGPRT T L GD+DA L++QGP +
Sbjct: 224 LPGHSAGPRTVTVKVELSCAPGDLDAVLILQGPPY 258
>gi|194328809 latent transforming growth factor beta binding protein
3 isoform 1 [Homo sapiens]
Length = 1303
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 81 VGPGAISVQMLSRPMVLKVRRHHSHPEA 108
+GPG IS ++ + P V+ VR HH PEA
Sbjct: 212 LGPGQISAEVQAPPPVVNVRVHHP-PEA 238
>gi|18497288 latent transforming growth factor beta binding protein
3 isoform 2 [Homo sapiens]
Length = 1256
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 81 VGPGAISVQMLSRPMVLKVRRHHSHPEA 108
+GPG IS ++ + P V+ VR HH PEA
Sbjct: 212 LGPGQISAEVQAPPPVVNVRVHHP-PEA 238
>gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens]
Length = 519
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 105 HPEACPYSL--LACPQSFWLHGPGAGP--RTPTCHK 136
H E P L L CP+S L PG P P+CH+
Sbjct: 443 HAELAPSGLPSLRCPRSTALRSPGLSPLLHYPSCHR 478
>gi|150456460 EPH receptor A10 isofom 3 [Homo sapiens]
Length = 1008
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 106 PEACPYSLLACPQSFWLHGPGAGPRTPTCHKLLGDMDAALLVQGPHFENMALTHWP 161
P CP L W PG PR H +L M VQ P ALT P
Sbjct: 868 PRNCPNLLHRLMLDCWQKDPGERPRFSQIHSILSKM-----VQDPEPPKCALTTCP 918
>gi|14249488 zinc finger and SCAN domain containing 10 [Homo
sapiens]
Length = 725
Score = 27.7 bits (60), Expect = 4.7
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 68 NPQTSFGVVQCGFVGPGAISVQMLSRPMVLKVRRHHSHPEACPYSLLACPQSF 120
NP+ F CG +S LSR LK + SHP + L C +SF
Sbjct: 287 NPELQFICADCG------VSFPQLSR---LKAHQLRSHPAGRSFLCLCCGKSF 330
>gi|239754442 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 27.3 bits (59), Expect = 6.2
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 45 DVIDLPCLQPGMRLLLFLLEVNENPQTSFGVVQCGFVGPGAI-SVQMLSRPMVLKVRRHH 103
DV+ +PC PG R F ++ + G + G P + ++ P +L +H
Sbjct: 22 DVMRVPCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQPHLLPGFSLVCLPFLLPA--NH 79
Query: 104 SHPEACPYSLLACPQSFWLHGP-GAGPRT 131
S A P S W GP GPRT
Sbjct: 80 SRAHASP--------SLWGPGPIKPGPRT 100
>gi|153946393 macrophage stimulating 1 receptor precursor [Homo
sapiens]
Length = 1400
Score = 26.9 bits (58), Expect = 8.0
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 101 RHHSHPEACPYSLLACPQSFWLHGPGAGPRTPTCHKLLGDMD---AALLVQGPHFENMAL 157
R PE CP SL Q W P PT L+G+++ +ALL G H+ +
Sbjct: 1304 RRLPQPEYCPDSLYQVMQQCWEADPAV---RPTFRVLVGEVEQIVSALL--GDHYVQLPA 1358
Query: 158 TH 159
T+
Sbjct: 1359 TY 1360
>gi|83816964 Holliday junction recognition protein [Homo sapiens]
Length = 748
Score = 26.9 bits (58), Expect = 8.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 15 DGWRVNMCRGPPASLITHLDVEVHQLALP 43
D W +NM RG PAS +E +L+LP
Sbjct: 460 DSWAMNMYRGGPASPGGLQGLETRRLSLP 488
>gi|21361914 semaphorin B [Homo sapiens]
Length = 761
Score = 26.9 bits (58), Expect = 8.0
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 82 GPGAISVQMLSRPMVLK--VRRHHSHPEA-CPYSLLACPQSFWLHGPGAGP 129
GP + S++ SRP ++K + +S E CP+ L A +W HGP A P
Sbjct: 550 GPMSRSLRPQSRPQIIKEVLAVPNSILELPCPH-LSALASYYWSHGPAAVP 599
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.142 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,881,246
Number of Sequences: 37866
Number of extensions: 363254
Number of successful extensions: 965
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 22
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.