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Search of human proteins with 239748009
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo
sapiens]
(244 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo ... 491 e-139
gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1 [H... 197 5e-51
gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo ... 197 5e-51
gi|4504523 heat shock 10kDa protein 1 [Homo sapiens] 165 3e-41
gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1 [... 156 1e-38
gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1 [H... 142 2e-34
gi|21735492 protein phosphatase 1, regulatory (inhibitor) subuni... 31 0.86
gi|31415880 protein phosphatase 1, regulatory (inhibitor) subuni... 31 0.86
gi|5902142 DNA polymerase sigma [Homo sapiens] 31 1.1
gi|45827690 BTB and CNC homology 1 transcription factor isoform ... 30 2.5
gi|4502353 BTB and CNC homology 1 transcription factor isoform a... 30 2.5
gi|239741937 PREDICTED: hypothetical protein [Homo sapiens] 29 4.3
gi|56121815 ADAM metallopeptidase with thrombospondin type 1 mot... 29 4.3
gi|46411166 muscleblind-like 1 isoform c [Homo sapiens] 29 4.3
gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens] 28 5.6
gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens] 28 5.6
gi|169216064 PREDICTED: hypothetical protein [Homo sapiens] 28 5.6
gi|51873049 hypothetical protein LOC8603 [Homo sapiens] 28 9.5
>gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo
sapiens]
Length = 244
Score = 491 bits (1265), Expect = e-139
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI
Sbjct: 1 MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
Query: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGCVYLKNNRAQEEAAAKDLSSR 120
QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGCVYLKNNRAQEEAAAKDLSSR
Sbjct: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGCVYLKNNRAQEEAAAKDLSSR 120
Query: 121 IFIRSQKCSRNQGHPNPCKEANYAQGKPEQDRDPALQAPGTEKTRTLPSGLLWGYGKWQQ 180
IFIRSQKCSRNQGHPNPCKEANYAQGKPEQDRDPALQAPGTEKTRTLPSGLLWGYGKWQQ
Sbjct: 121 IFIRSQKCSRNQGHPNPCKEANYAQGKPEQDRDPALQAPGTEKTRTLPSGLLWGYGKWQQ 180
Query: 181 STLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDS 240
STLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDS
Sbjct: 181 STLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDS 240
Query: 241 LSDG 244
LSDG
Sbjct: 241 LSDG 244
>gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1 [Homo
sapiens]
Length = 175
Score = 197 bits (502), Expect = 5e-51
Identities = 102/119 (85%), Positives = 107/119 (89%), Gaps = 1/119 (0%)
Query: 1 MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI
Sbjct: 1 MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
Query: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTG-CVYLKNNRAQEEAAAKDLS 118
QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTG C+ + Q+ ++S
Sbjct: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGHCLLWGYGKWQQSTLGSEIS 119
Score = 154 bits (388), Expect = 9e-38
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 171 LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSV 230
LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSV
Sbjct: 102 LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSV 161
Query: 231 QLAKFPAEDSLSDG 244
QLAKFPAEDSLSDG
Sbjct: 162 QLAKFPAEDSLSDG 175
>gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo
sapiens]
Length = 175
Score = 197 bits (502), Expect = 5e-51
Identities = 102/119 (85%), Positives = 107/119 (89%), Gaps = 1/119 (0%)
Query: 1 MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI
Sbjct: 1 MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
Query: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTG-CVYLKNNRAQEEAAAKDLS 118
QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTG C+ + Q+ ++S
Sbjct: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGHCLLWGYGKWQQSTLGSEIS 119
Score = 154 bits (388), Expect = 9e-38
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 171 LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSV 230
LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSV
Sbjct: 102 LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSV 161
Query: 231 QLAKFPAEDSLSDG 244
QLAKFPAEDSLSDG
Sbjct: 162 QLAKFPAEDSLSDG 175
>gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]
Length = 102
Score = 165 bits (418), Expect = 3e-41
Identities = 85/97 (87%), Positives = 88/97 (90%)
Query: 1 MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
MAGQAFRKFL LFDRV VER A TVTKGGIMLPEKSQGKVLQA VAVGSGSKGKGGEI
Sbjct: 1 MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI 60
Query: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97
QPVS++VGDK LL EYGGT+VVLDDKDYFLFRDGDIL
Sbjct: 61 QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDIL 97
>gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1
[Homo sapiens]
Length = 103
Score = 156 bits (395), Expect = 1e-38
Identities = 82/98 (83%), Positives = 88/98 (89%), Gaps = 1/98 (1%)
Query: 1 MAGQAFRK-FLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGE 59
MAGQAFRK FL LF+RV VER A TVT+GGIMLPEKSQGKVLQA VAVGSGSKGKGGE
Sbjct: 1 MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60
Query: 60 IQPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97
IQPVSM+VGDK LL E+GGT+V+LDDKDYFLFRDGDIL
Sbjct: 61 IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDIL 98
>gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1
[Homo sapiens]
Length = 102
Score = 142 bits (359), Expect = 2e-34
Identities = 75/97 (77%), Positives = 79/97 (81%)
Query: 1 MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
MAGQ FRKFL L + ER TVTKGGIMLPEKSQGKV QA VAVGSGSKGKGGE
Sbjct: 1 MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60
Query: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97
QPVS +VGDK LL +YGGT+VVLDDKDYFLFRDGDIL
Sbjct: 61 QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDIL 97
>gi|21735492 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 1 [Homo sapiens]
Length = 204
Score = 31.2 bits (69), Expect = 0.86
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 109 QEEAAAKDLSSRIFIRSQKCSRNQG------HPNPCKEANYAQGKPEQDRDPALQAPGTE 162
+E++ A+ L QK + QG P P E+ G +Q DPAL PG E
Sbjct: 134 EEDSQAEVLKVIRQSAGQKTTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEE 193
Query: 163 KTRTLPS 169
R PS
Sbjct: 194 PQRPSPS 200
>gi|31415880 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 2 [Homo sapiens]
Length = 168
Score = 31.2 bits (69), Expect = 0.86
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 109 QEEAAAKDLSSRIFIRSQKCSRNQG------HPNPCKEANYAQGKPEQDRDPALQAPGTE 162
+E++ A+ L QK + QG P P E+ G +Q DPAL PG E
Sbjct: 98 EEDSQAEVLKVIRQSAGQKTTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEE 157
Query: 163 KTRTLPS 169
R PS
Sbjct: 158 PQRPSPS 164
>gi|5902142 DNA polymerase sigma [Homo sapiens]
Length = 542
Score = 30.8 bits (68), Expect = 1.1
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 20/111 (18%)
Query: 131 NQGHPNPCKEANY--------AQGKPEQDRDPALQAP-GTEKTRTLPSGLLWGYGKWQQS 181
++ HP+P ++ G+ Q+R+P ++P G T +L S L G S
Sbjct: 304 SKAHPSPGMDSRIKIKERIATCNGEQTQNREP--ESPYGQRLTLSLSSPQLLSSGSSASS 361
Query: 182 TL---GSEISHGTRHLR--ALTKFNLSSPAPLSATLPPTALKMEMYPTFKP 227
GS++ T ++ +F+L +PAPL A L PTAL M P+ KP
Sbjct: 362 VSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGL-PTALPM---PSGKP 408
>gi|45827690 BTB and CNC homology 1 transcription factor isoform a
[Homo sapiens]
Length = 736
Score = 29.6 bits (65), Expect = 2.5
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 138 CKEANYAQGKPEQDRDPALQAPGTEKTRTLP---SGLLWGYGKWQQSTLGSEISHGTRHL 194
C E+ A E +DPA Q P TEK+ P + + +G + S L + +G +
Sbjct: 279 CDESKLAMEPEETKKDPASQCP-TEKSEVTPFPHNSSIDPHGLYSLSLLHTYDQYGDLNF 337
Query: 195 RALTKFNLSSPAPLSAT 211
+ + + PLS T
Sbjct: 338 AGMQNTTVLTEKPLSGT 354
>gi|4502353 BTB and CNC homology 1 transcription factor isoform a
[Homo sapiens]
Length = 736
Score = 29.6 bits (65), Expect = 2.5
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 138 CKEANYAQGKPEQDRDPALQAPGTEKTRTLP---SGLLWGYGKWQQSTLGSEISHGTRHL 194
C E+ A E +DPA Q P TEK+ P + + +G + S L + +G +
Sbjct: 279 CDESKLAMEPEETKKDPASQCP-TEKSEVTPFPHNSSIDPHGLYSLSLLHTYDQYGDLNF 337
Query: 195 RALTKFNLSSPAPLSAT 211
+ + + PLS T
Sbjct: 338 AGMQNTTVLTEKPLSGT 354
>gi|239741937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 28.9 bits (63), Expect = 4.3
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 129 SRNQGHPNPCKEANYAQGKPEQDRDPALQAPGTEKTRTLPSGLLWGYGKWQQSTLGSEIS 188
S QG P ++ P+Q R P + G + R GLL G G ++ G
Sbjct: 94 SAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRA-- 151
Query: 189 HGTRHLRA 196
G+R LRA
Sbjct: 152 -GSRWLRA 158
>gi|56121815 ADAM metallopeptidase with thrombospondin type 1 motif,
10 preproprotein [Homo sapiens]
Length = 1103
Score = 28.9 bits (63), Expect = 4.3
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 138 CKEANYAQGKPEQDRDPALQAPGTEKT--RTLPSGLLWGYGKWQQSTLGSEISHGTRHLR 195
CK A++ P PA + P T + R P W G+W + + + R +R
Sbjct: 971 CKSADHRATLPPAHCSPAAKPPATMRCNLRRCPPAR-WVAGEWGECSAQCGVGQRQRSVR 1029
Query: 196 ALTKFNLSSPAPLSATLPPTALKME 220
+ +S A PPT + E
Sbjct: 1030 CTSHTGQASHECTEALRPPTTQQCE 1054
>gi|46411166 muscleblind-like 1 isoform c [Homo sapiens]
Length = 388
Score = 28.9 bits (63), Expect = 4.3
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 111 EAAAKDLSSRIFIRSQKCSRNQGHPNPCKEANYAQGKPEQDRDPALQAPGTEKTRTLPSG 170
+AAA ++ +Q ++ P EA + G P+ P + P EKT +
Sbjct: 256 QAAAAQAAATAAAMTQSAVKSLKRP---LEATFDLGIPQAVLPPLPKRPALEKTNGATAV 312
Query: 171 LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSA 210
G ++QQ+ ++ T L + + ++PA +SA
Sbjct: 313 FNTGIFQYQQALANMQLQQHTAFLPPVPMVHGATPATVSA 352
>gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens]
Length = 463
Score = 28.5 bits (62), Expect = 5.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 164 TRTLPSGLLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSA----------TLP 213
T TLP + GY +T G+E S + L +L+ FN +S L + +P
Sbjct: 290 TPTLPGQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGWQQQHLHNMP 349
Query: 214 PTAL 217
P+AL
Sbjct: 350 PSAL 353
>gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens]
Length = 473
Score = 28.5 bits (62), Expect = 5.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 164 TRTLPSGLLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSA----------TLP 213
T TLP + GY +T G+E S + L +L+ FN +S L + +P
Sbjct: 300 TPTLPGQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGWQQQHLHNMP 359
Query: 214 PTAL 217
P+AL
Sbjct: 360 PSAL 363
>gi|169216064 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 28.5 bits (62), Expect = 5.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 126 QKCSRNQGHPNPCKEANYAQGKPEQDRDPALQAPGTEKTRTLPSGLLWGYGKWQQ 180
++C R P P +E G P DRD + +PG+ KT +G W++
Sbjct: 83 ERCQRAGASPEPREEG--CNGSPIVDRDIRIPSPGSLKTSP-------EFGSWKE 128
>gi|51873049 hypothetical protein LOC8603 [Homo sapiens]
Length = 1224
Score = 27.7 bits (60), Expect = 9.5
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 59 EIQPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGCVYLKNNRAQEEAAAKDLS 118
++ P+S + D + L Y T VV + + G ++ + N E A KD S
Sbjct: 297 DVAPLSAKFADIYPLSNYDDTEVVAN------------MNG-IHSELNGGGENMALKDES 343
Query: 119 SRIFIRSQKCSRNQGHPNPCKEANYAQGKPEQDRDPALQAPGTEKTR 165
+I S S + + G P++D ++P TE+++
Sbjct: 344 PQISSTSSSSSEADDEEADGESSGEPPGAPKEDGVLGSRSPRTEESK 390
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,901,553
Number of Sequences: 37866
Number of extensions: 480032
Number of successful extensions: 1309
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1297
Number of HSP's gapped (non-prelim): 20
length of query: 244
length of database: 18,247,518
effective HSP length: 99
effective length of query: 145
effective length of database: 14,498,784
effective search space: 2102323680
effective search space used: 2102323680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.