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Search of human proteins with 239747184
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747184 PREDICTED: hypothetical protein XP_002343935 [Homo
sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747184 PREDICTED: hypothetical protein XP_002343935 [Homo ... 528 e-150
gi|103471991 X Kell blood group precursor-related family, member... 522 e-148
gi|237874249 XK, Kell blood group complex subunit-related, X-lin... 249 2e-66
gi|10835267 membrane transport protein XK [Homo sapiens] 175 3e-44
gi|50363369 XK, Kell blood group complex subunit-related, Y-link... 111 6e-25
gi|51093878 XK, Kell blood group complex subunit-related, Y-link... 111 6e-25
gi|89886484 XK, Kell blood group complex subunit-related family,... 40 0.003
gi|59709427 XK, Kell blood group complex subunit-related family,... 35 0.086
gi|116268093 taste receptor, type 2, member 41 [Homo sapiens] 33 0.33
gi|58743323 XK, Kell blood group complex subunit-related family,... 30 1.6
gi|153791876 olfactory receptor, family 6, subfamily Q, member 1... 30 2.1
gi|34486092 adenylate cyclase 5 [Homo sapiens] 30 2.8
gi|225579067 solute carrier family 12, member 4 isoform e [Homo ... 29 4.7
gi|225579065 solute carrier family 12, member 4 isoform d [Homo ... 29 4.7
gi|225579063 solute carrier family 12, member 4 isoform c [Homo ... 29 4.7
gi|225579061 solute carrier family 12, member 4 isoform b [Homo ... 29 4.7
gi|4827006 solute carrier family 12, member 4 isoform a [Homo sa... 29 4.7
gi|118722353 XK-related protein 5a [Homo sapiens] 28 6.1
gi|115334675 hypothetical protein LOC90268 [Homo sapiens] 28 8.0
>gi|239747184 PREDICTED: hypothetical protein XP_002343935 [Homo
sapiens]
Length = 260
Score = 528 bits (1361), Expect = e-150
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MTFSLLSVTYGAIRCNILAIQISNDDTTIKLPLIEFFCVVMWRFLEVISRVVTLALFIAS 60
MTFSLLSVTYGAIRCNILAIQISNDDTTIKLPLIEFFCVVMWRFLEVISRVVTLALFIAS
Sbjct: 1 MTFSLLSVTYGAIRCNILAIQISNDDTTIKLPLIEFFCVVMWRFLEVISRVVTLALFIAS 60
Query: 61 LKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINF 120
LKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINF
Sbjct: 61 LKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINF 120
Query: 121 SCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMILVFRFFGGKTLLNCCDSLIA 180
SCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMILVFRFFGGKTLLNCCDSLIA
Sbjct: 121 SCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMILVFRFFGGKTLLNCCDSLIA 180
Query: 181 VQLIISYLLATGFMLLFYQYLYPWQSGKVLPGRTENQPEAPYYYVNIEKTEKNKNKQLRN 240
VQLIISYLLATGFMLLFYQYLYPWQSGKVLPGRTENQPEAPYYYVNIEKTEKNKNKQLRN
Sbjct: 181 VQLIISYLLATGFMLLFYQYLYPWQSGKVLPGRTENQPEAPYYYVNIEKTEKNKNKQLRN 240
Query: 241 YCNSCNRVGYFSIRKSMTCS 260
YCNSCNRVGYFSIRKSMTCS
Sbjct: 241 YCNSCNRVGYFSIRKSMTCS 260
>gi|103471991 X Kell blood group precursor-related family, member 3
[Homo sapiens]
Length = 459
Score = 522 bits (1345), Expect = e-148
Identities = 257/260 (98%), Positives = 258/260 (99%)
Query: 1 MTFSLLSVTYGAIRCNILAIQISNDDTTIKLPLIEFFCVVMWRFLEVISRVVTLALFIAS 60
MTFSLLSVTYGAIRCNILAIQISNDDTTIKLP IEFFCVVMWRFLEVISRVVTLA FIAS
Sbjct: 200 MTFSLLSVTYGAIRCNILAIQISNDDTTIKLPPIEFFCVVMWRFLEVISRVVTLAFFIAS 259
Query: 61 LKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINF 120
LKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINF
Sbjct: 260 LKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINF 319
Query: 121 SCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMILVFRFFGGKTLLNCCDSLIA 180
SCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMILVFRFFGGKTLLNCCDSLIA
Sbjct: 320 SCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMILVFRFFGGKTLLNCCDSLIA 379
Query: 181 VQLIISYLLATGFMLLFYQYLYPWQSGKVLPGRTENQPEAPYYYVNIEKTEKNKNKQLRN 240
VQLIISYLLATGFMLLFYQYLYPWQSGKVLPGRTENQPEAPYYYVNIEKTEKNKNKQLRN
Sbjct: 380 VQLIISYLLATGFMLLFYQYLYPWQSGKVLPGRTENQPEAPYYYVNIEKTEKNKNKQLRN 439
Query: 241 YCNSCNRVGYFSIRKSMTCS 260
YC+SCNRVGYFSIRKSMTCS
Sbjct: 440 YCHSCNRVGYFSIRKSMTCS 459
>gi|237874249 XK, Kell blood group complex subunit-related, X-linked
[Homo sapiens]
Length = 449
Score = 249 bits (636), Expect = 2e-66
Identities = 116/206 (56%), Positives = 159/206 (77%)
Query: 1 MTFSLLSVTYGAIRCNILAIQISNDDTTIKLPLIEFFCVVMWRFLEVISRVVTLALFIAS 60
M FSL+SVTYGA CN+LAIQI DD I+L +E C+ +WR LE+ SR++ L LF A+
Sbjct: 205 MVFSLVSVTYGATLCNMLAIQIKYDDYKIRLGPLEVLCITIWRTLEITSRLLILVLFSAT 264
Query: 61 LKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINF 120
LKLK++P L++ + + L PW++FW+SGA +P N E N + VGT+++L +T+LYA INF
Sbjct: 265 LKLKAVPFLVLNFLIILFEPWIKFWRSGAQMPNNIEKNFSRVGTLVVLISVTILYAGINF 324
Query: 121 SCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMILVFRFFGGKTLLNCCDSLIA 180
SCWSA++L+L+D ++D Q WGH LHYS + +ENVIM+LVF+FFG K LLN C SLIA
Sbjct: 325 SCWSALQLRLADRDLVDKGQNWGHMGLHYSVRLVENVIMVLVFKFFGVKVLLNYCHSLIA 384
Query: 181 VQLIISYLLATGFMLLFYQYLYPWQS 206
+QLII+YL++ GFMLLF+QYL+P +S
Sbjct: 385 LQLIIAYLISIGFMLLFFQYLHPLRS 410
>gi|10835267 membrane transport protein XK [Homo sapiens]
Length = 444
Score = 175 bits (444), Expect = 3e-44
Identities = 83/203 (40%), Positives = 126/203 (62%)
Query: 1 MTFSLLSVTYGAIRCNILAIQISNDDTTIKLPLIEFFCVVMWRFLEVISRVVTLALFIAS 60
MT SLLS+ YGA+RCNILAI+I D+ +K+ + + C+ +WR E+ +RVV L LF +
Sbjct: 173 MTISLLSIVYGALRCNILAIKIKYDEYEVKVKPLAYVCIFLWRSFEIATRVVVLVLFTSV 232
Query: 61 LKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINF 120
LK + ++LI +F L PW+ FW SG+ P N E + VGT ++L +TLLY IN
Sbjct: 233 LKTWVVVIILINFFSFFLYPWILFWCSGSPFPENIEKALSRVGTTIVLCFLTLLYTGINM 292
Query: 121 SCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMILVFRFFGGKTLLNCCDSLIA 180
CWSAV+L++ +I W +++Y +F+EN I++L++ F + C L+
Sbjct: 293 FCWSAVQLKIDSPDLISKSHNWYQLLVYYMIRFIENAILLLLWYLFKTDIYMYVCAPLLV 352
Query: 181 VQLIISYLLATGFMLLFYQYLYP 203
+QL+I Y A FML+FYQ+ +P
Sbjct: 353 LQLLIGYCTAILFMLVFYQFFHP 375
>gi|50363369 XK, Kell blood group complex subunit-related, Y-linked
[Homo sapiens]
Length = 117
Score = 111 bits (278), Expect = 6e-25
Identities = 61/101 (60%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 3 FSLLSVTYGAIRCNILAIQISNDDTTIKLPLIEFFCVVMWRFLEVISRVVTLALFIASLK 62
F L+S GAI CNILAI+ ND IKL +I+ +++W L +IS VVTLA F ASLK
Sbjct: 12 FPLISCV-GAIHCNILAIRTGNDFAAIKLQVIKLIYLMIWHSLVIISPVVTLAFFPASLK 70
Query: 63 LKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVG 103
SL LLIIYFV LL PWLEF KSG HLP N +NNS+MVG
Sbjct: 71 QGSLHFLLIIYFVLLLTPWLEFSKSGTHLPSNTKNNSSMVG 111
>gi|51093878 XK, Kell blood group complex subunit-related, Y-linked
2 [Homo sapiens]
Length = 117
Score = 111 bits (278), Expect = 6e-25
Identities = 61/101 (60%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 3 FSLLSVTYGAIRCNILAIQISNDDTTIKLPLIEFFCVVMWRFLEVISRVVTLALFIASLK 62
F L+S GAI CNILAI+ ND IKL +I+ +++W L +IS VVTLA F ASLK
Sbjct: 12 FPLISCV-GAIHCNILAIRTGNDFAAIKLQVIKLIYLMIWHSLVIISPVVTLAFFPASLK 70
Query: 63 LKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVG 103
SL LLIIYFV LL PWLEF KSG HLP N +NNS+MVG
Sbjct: 71 QGSLHFLLIIYFVLLLTPWLEFSKSGTHLPSNTKNNSSMVG 111
>gi|89886484 XK, Kell blood group complex subunit-related family,
member 6 isoform b [Homo sapiens]
Length = 641
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 40 VMWRFLEVISRVVTLALFIASLKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNS 99
V WR + SRV++ ALF AS+ + +++++ + +A W+ + + +E
Sbjct: 361 VFWRLFTISSRVISFALF-ASIFQLYFGIFVVVHWCA-MAFWIIHGGTDFCMSKWEEILF 418
Query: 100 NMVGTVLMLFLITLLYAAINFSCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIM 159
NMV ++ +F CW VK +GR R+ +Y+ EN +
Sbjct: 419 NMVVGIVYIF------------CWFNVK---------EGRTRY-RMFAYYTIVLTENAAL 456
Query: 160 ILVFRFFGGKTLLNCCDSLIAVQLIISYLLATGFMLLFYQYLYP 203
++ F+ + + IS++ MLL+Y L+P
Sbjct: 457 TFLWYFYRDPETTDSYAVPALCCVFISFVAGIAMMLLYYGVLHP 500
>gi|59709427 XK, Kell blood group complex subunit-related family,
member 4 [Homo sapiens]
Length = 650
Score = 34.7 bits (78), Expect = 0.086
Identities = 43/203 (21%), Positives = 89/203 (43%), Gaps = 32/203 (15%)
Query: 4 SLLSVTYGAIRCNILAIQISNDDTTIKLPLIEFFCVVM---WRFLEVISRVVTLALFIAS 60
SL+S+ + A+ A++ S DD K P I + V++ W F + +RV+T ALF +
Sbjct: 342 SLVSLAW-ALASYQKALRDSRDD---KKP-ISYMAVIIQFCWHFFTIAARVITFALFASV 396
Query: 61 LKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINF 120
+L + +++++ ++ W+ ++ + +E +MV ++ +F
Sbjct: 397 FQL-YFGIFIVLHW-CIMTFWIVHCETEFCITKWEEIVFDMVVGIIYIF----------- 443
Query: 121 SCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMILVFRFFGGKTLLNCCDSLIA 180
W VK +GR R ++Y LEN + ++ + + +
Sbjct: 444 -SWFNVK---------EGRTRC-RLFIYYFVILLENTALSALWYLYKAPQIADAFAIPAL 492
Query: 181 VQLIISYLLATGFMLLFYQYLYP 203
+ S+L FML++Y + +P
Sbjct: 493 CVVFSSFLTGVVFMLMYYAFFHP 515
>gi|116268093 taste receptor, type 2, member 41 [Homo sapiens]
Length = 307
Score = 32.7 bits (73), Expect = 0.33
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 101 MVGTVLMLFLITLLYAAINFSCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLENVIMI 160
++G+VL+ F+ITLL+ +N+ + ++ + +W RI Y F L+ VI
Sbjct: 134 LLGSVLISFIITLLFFWVNYPVYQEFLIRKFSGNM---TYKWNTRIETYYFPSLKLVIWS 190
Query: 161 LVFRFFGGKTLLNCCDSLIAVQLIISYL 188
+ F F L+++ L+I+ L
Sbjct: 191 IPFSVF-----------LVSIMLLINSL 207
>gi|58743323 XK, Kell blood group complex subunit-related family,
member 7 [Homo sapiens]
Length = 579
Score = 30.4 bits (67), Expect = 1.6
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 40 VMWRFLEVISRVVTLALFIASLKLKSLPVLLIIYF-VSLLAPW--LEFWKSGAHLPGNKE 96
V+W + +R + ALF + KL YF + ++A W + FW + G +
Sbjct: 303 VLWHLFSIAARGLAFALFASVYKL---------YFGIFIVAHWCVMTFWV----IQGETD 349
Query: 97 NNSNMVGTVLMLFLITLLYAAINFSCWSAVKLQLSDDKIIDGRQRWGHRILHYSFQFLEN 156
+ ++ ++ ++Y CW VK +GR R L++ LEN
Sbjct: 350 FCMSKWEEIIYNMVVGIIY----IFCWFNVK---------EGRSR-RRMTLYHCIVLLEN 395
Query: 157 VIMILVFRFFGGKTLLNCCDSLIAVQLII-SYLLATGFMLLFYQYLYP 203
L ++ + SLI V ++ S+ L FM ++Y L+P
Sbjct: 396 A--ALTGFWYSSRNFSTDFYSLIMVCVVASSFALGIFFMCVYYCLLHP 441
>gi|153791876 olfactory receptor, family 6, subfamily Q, member 1
[Homo sapiens]
Length = 317
Score = 30.0 bits (66), Expect = 2.1
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 32 PLIEFFCV-VMWRFLEVISRVVTLALFIASLKLKSLPVLLIIYFVSLLAPWLEFWKSGAH 90
PL+ C V W+ E + +V+LA+ +AS + ++ I++ + + E WK+ +
Sbjct: 187 PLLALSCSDVTWK--ETVDFLVSLAVLLASSMVIAVSYGNIVWTLLHIRSAAERWKAFST 244
Query: 91 LPGNKENNSNMVGTVLMLFLITLLYAAINFS 121
+ S GT+ +++ T + ++INF+
Sbjct: 245 CAAHLTVVSLFYGTLFFMYVQTKVTSSINFN 275
>gi|34486092 adenylate cyclase 5 [Homo sapiens]
Length = 1261
Score = 29.6 bits (65), Expect = 2.8
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 51 VVTLALFIASLKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKENNSNMVGTVLMLFL 110
+V ++F+ S L +L ++ FVS++ ++ + S K S M T++ +F
Sbjct: 782 IVPHSIFMLSFYLTCSLLLTLVVFVSVIYSCVKLFPSPLQTLSRKIVRSKMNSTLVGVFT 841
Query: 111 ITLLYAA 117
ITL++ A
Sbjct: 842 ITLVFLA 848
>gi|225579067 solute carrier family 12, member 4 isoform e [Homo
sapiens]
Length = 1054
Score = 28.9 bits (63), Expect = 4.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 57 FIASLKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKE-NNSNMVGTVLMLFLITLLY 115
F A++ + +L+ Y + P F+ SGAH N NN + GT+ + F+ +++
Sbjct: 180 FAAAMYILGAIEILLTY---IAPPAAIFYPSGAHDTSNATLNNMRVYGTIFLTFMTLVVF 236
Query: 116 AAINF 120
+ +
Sbjct: 237 VGVKY 241
>gi|225579065 solute carrier family 12, member 4 isoform d [Homo
sapiens]
Length = 1079
Score = 28.9 bits (63), Expect = 4.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 57 FIASLKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKE-NNSNMVGTVLMLFLITLLY 115
F A++ + +L+ Y + P F+ SGAH N NN + GT+ + F+ +++
Sbjct: 205 FAAAMYILGAIEILLTY---IAPPAAIFYPSGAHDTSNATLNNMRVYGTIFLTFMTLVVF 261
Query: 116 AAINF 120
+ +
Sbjct: 262 VGVKY 266
>gi|225579063 solute carrier family 12, member 4 isoform c [Homo
sapiens]
Length = 1087
Score = 28.9 bits (63), Expect = 4.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 57 FIASLKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKE-NNSNMVGTVLMLFLITLLY 115
F A++ + +L+ Y + P F+ SGAH N NN + GT+ + F+ +++
Sbjct: 213 FAAAMYILGAIEILLTY---IAPPAAIFYPSGAHDTSNATLNNMRVYGTIFLTFMTLVVF 269
Query: 116 AAINF 120
+ +
Sbjct: 270 VGVKY 274
>gi|225579061 solute carrier family 12, member 4 isoform b [Homo
sapiens]
Length = 1079
Score = 28.9 bits (63), Expect = 4.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 57 FIASLKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKE-NNSNMVGTVLMLFLITLLY 115
F A++ + +L+ Y + P F+ SGAH N NN + GT+ + F+ +++
Sbjct: 211 FAAAMYILGAIEILLTY---IAPPAAIFYPSGAHDTSNATLNNMRVYGTIFLTFMTLVVF 267
Query: 116 AAINF 120
+ +
Sbjct: 268 VGVKY 272
>gi|4827006 solute carrier family 12, member 4 isoform a [Homo
sapiens]
Length = 1085
Score = 28.9 bits (63), Expect = 4.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 57 FIASLKLKSLPVLLIIYFVSLLAPWLEFWKSGAHLPGNKE-NNSNMVGTVLMLFLITLLY 115
F A++ + +L+ Y + P F+ SGAH N NN + GT+ + F+ +++
Sbjct: 211 FAAAMYILGAIEILLTY---IAPPAAIFYPSGAHDTSNATLNNMRVYGTIFLTFMTLVVF 267
Query: 116 AAINF 120
+ +
Sbjct: 268 VGVKY 272
>gi|118722353 XK-related protein 5a [Homo sapiens]
Length = 339
Score = 28.5 bits (62), Expect = 6.1
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 28/136 (20%)
Query: 29 IKLPLIEFFCVVMWRFLEVISRVVTLALFIASLKLKSLPVLLIIYFVSLLAPWL--EFWK 86
+ +P FC +WR + +RV++L LF + FV A WL FW
Sbjct: 172 LAMPWAALFCQQLWRMGMLGTRVLSLVLFYKAYH--------FWVFVVAGAHWLVMTFWL 223
Query: 87 SGAHLPGNKENNSNMVGTVLMLFLITLLYAAINFSCWSAVKLQLSDDKIIDGRQRWGHRI 146
S+++ + L LL A+ C+ + S +++ +
Sbjct: 224 VA--------QQSDIIDSTCHWRLFNLLVGAVYILCYLSFWDSPSRNRM----------V 265
Query: 147 LHYSFQFLENVIMILV 162
Y LEN+I++L+
Sbjct: 266 TFYMVMLLENIILLLL 281
>gi|115334675 hypothetical protein LOC90268 [Homo sapiens]
Length = 352
Score = 28.1 bits (61), Expect = 8.0
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 21 QISNDDTTIKLPLIEFFCVVMWRFLEVISRVVTLALFIASLKLKSLPVLLIIYFVSLLAP 80
++S T+I+ + +C + + +S+ V L ++ +L LP LI +
Sbjct: 112 EVSQKFTSIRRVRGDNYCALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKY-----N 166
Query: 81 WLEFWKSGAHLPGNKEN 97
W++ WK G G E+
Sbjct: 167 WIKQWKLGLKFDGKNED 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.141 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,798,435
Number of Sequences: 37866
Number of extensions: 337739
Number of successful extensions: 944
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 22
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.