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Search of human proteins with 239746665
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746665 PREDICTED: hypothetical protein XP_002343826 [Homo
sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746665 PREDICTED: hypothetical protein XP_002343826 [Homo ... 368 e-102
gi|239757684 PREDICTED: hypothetical protein [Homo sapiens] 349 6e-97
gi|239752174 PREDICTED: hypothetical protein XP_002348160 [Homo ... 349 6e-97
gi|239746697 PREDICTED: hypothetical protein XP_002343833 [Homo ... 349 6e-97
gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens] 174 4e-44
gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens] 174 4e-44
gi|229094128 active breakpoint cluster region-related protein i... 120 6e-28
gi|38679957 active breakpoint cluster region-related protein is... 120 6e-28
gi|38679954 active breakpoint cluster region-related protein is... 120 6e-28
gi|226693398 Rho GTPase activating protein 27 isoform b [Homo sa... 56 1e-08
gi|40548322 Rho GTPase activating protein 27 isoform a [Homo sap... 56 1e-08
gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo sap... 56 2e-08
gi|122939149 Rho GTPase activating protein 9 isoform 3 [Homo sap... 56 2e-08
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 56 2e-08
gi|91208437 GEM interacting protein [Homo sapiens] 55 3e-08
gi|47834348 minor histocompatibility antigen HA-1 [Homo sapiens] 54 6e-08
gi|203097003 Rho GTPase activating protein 21 [Homo sapiens] 52 3e-07
gi|208022687 GTPase regulator associated with the focal adhesion... 51 5e-07
gi|7662208 GTPase regulator associated with the focal adhesion k... 51 5e-07
gi|4502813 chimerin (chimaerin) 1 isoform a [Homo sapiens] 50 1e-06
gi|209364623 chimerin (chimaerin) 1 isoform b [Homo sapiens] 50 1e-06
gi|50843948 Rho GTPase activating protein 10 [Homo sapiens] 50 1e-06
gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens] 49 2e-06
gi|4757980 beta chimerin isoform 2 [Homo sapiens] 48 4e-06
gi|91106928 beta chimerin isoform 1 [Homo sapiens] 48 4e-06
gi|34013590 Rho GTPase activating protein 2 [Homo sapiens] 47 9e-06
gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo sa... 47 9e-06
gi|26986534 Rho GTPase activating protein 12 [Homo sapiens] 47 1e-05
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 45 4e-05
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 45 4e-05
>gi|239746665 PREDICTED: hypothetical protein XP_002343826 [Homo
sapiens]
Length = 181
Score = 368 bits (944), Expect = e-102
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGSDPLPPAALSDPVAKKSCMLNLLSSLPEA 60
MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGSDPLPPAALSDPVAKKSCMLNLLSSLPEA
Sbjct: 1 MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGSDPLPPAALSDPVAKKSCMLNLLSSLPEA 60
Query: 61 NLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEKESKLPANPSQPITMTDS 120
NLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEKESKLPANPSQPITMTDS
Sbjct: 61 NLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEKESKLPANPSQPITMTDS 120
Query: 121 WSLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ 180
WSLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ
Sbjct: 121 WSLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ 180
Query: 181 A 181
A
Sbjct: 181 A 181
>gi|239757684 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 349 bits (896), Expect = 6e-97
Identities = 174/181 (96%), Positives = 176/181 (97%)
Query: 1 MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGSDPLPPAALSDPVAKKSCMLNLLSSLPEA 60
MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGS PLPPAALSDPVA+KSCMLNLL SLPEA
Sbjct: 1 MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGSHPLPPAALSDPVARKSCMLNLLLSLPEA 60
Query: 61 NLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEKESKLPANPSQPITMTDS 120
NLLTFLFLLD LER+AEKEAVNKMSLHNL TVFGPTLLRPSEKESKLPANPSQPITMTDS
Sbjct: 61 NLLTFLFLLDRLERVAEKEAVNKMSLHNLATVFGPTLLRPSEKESKLPANPSQPITMTDS 120
Query: 121 WSLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ 180
SLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ
Sbjct: 121 RSLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ 180
Query: 181 A 181
A
Sbjct: 181 A 181
>gi|239752174 PREDICTED: hypothetical protein XP_002348160 [Homo
sapiens]
Length = 181
Score = 349 bits (896), Expect = 6e-97
Identities = 174/181 (96%), Positives = 176/181 (97%)
Query: 1 MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGSDPLPPAALSDPVAKKSCMLNLLSSLPEA 60
MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGS PLPPAALSDPVA+KSCMLNLL SLPEA
Sbjct: 1 MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGSHPLPPAALSDPVARKSCMLNLLLSLPEA 60
Query: 61 NLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEKESKLPANPSQPITMTDS 120
NLLTFLFLLD LER+AEKEAVNKMSLHNL TVFGPTLLRPSEKESKLPANPSQPITMTDS
Sbjct: 61 NLLTFLFLLDRLERVAEKEAVNKMSLHNLATVFGPTLLRPSEKESKLPANPSQPITMTDS 120
Query: 121 WSLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ 180
SLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ
Sbjct: 121 RSLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ 180
Query: 181 A 181
A
Sbjct: 181 A 181
>gi|239746697 PREDICTED: hypothetical protein XP_002343833 [Homo
sapiens]
Length = 181
Score = 349 bits (896), Expect = 6e-97
Identities = 174/181 (96%), Positives = 176/181 (97%)
Query: 1 MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGSDPLPPAALSDPVAKKSCMLNLLSSLPEA 60
MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGS PLPPAALSDPVA+KSCMLNLL SLPEA
Sbjct: 1 MMTSLNCARTRVPGAPCDHLGRGLRLVVTQGSHPLPPAALSDPVARKSCMLNLLLSLPEA 60
Query: 61 NLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEKESKLPANPSQPITMTDS 120
NLLTFLFLLD LER+AEKEAVNKMSLHNL TVFGPTLLRPSEKESKLPANPSQPITMTDS
Sbjct: 61 NLLTFLFLLDRLERVAEKEAVNKMSLHNLATVFGPTLLRPSEKESKLPANPSQPITMTDS 120
Query: 121 WSLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ 180
SLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ
Sbjct: 121 RSLEVMSQIQIPNKMLECNPWTIRVLAAFGLPLSAWLRCSQEWVLKSLENRIRGGLGRGQ 180
Query: 181 A 181
A
Sbjct: 181 A 181
>gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens]
Length = 1227
Score = 174 bits (441), Expect = 4e-44
Identities = 86/93 (92%), Positives = 91/93 (97%)
Query: 39 ALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLL 98
ALSDPVAK+SCMLNLL SLPEANLLTFLFLLDHL+R+AEKEAVNKMSLHNL TVFGPTLL
Sbjct: 1109 ALSDPVAKESCMLNLLLSLPEANLLTFLFLLDHLKRVAEKEAVNKMSLHNLATVFGPTLL 1168
Query: 99 RPSEKESKLPANPSQPITMTDSWSLEVMSQIQI 131
RPSEKESKLPANPSQPITMTDSWSLEVMSQ+Q+
Sbjct: 1169 RPSEKESKLPANPSQPITMTDSWSLEVMSQVQV 1201
>gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens]
Length = 1271
Score = 174 bits (441), Expect = 4e-44
Identities = 86/93 (92%), Positives = 91/93 (97%)
Query: 39 ALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLL 98
ALSDPVAK+SCMLNLL SLPEANLLTFLFLLDHL+R+AEKEAVNKMSLHNL TVFGPTLL
Sbjct: 1153 ALSDPVAKESCMLNLLLSLPEANLLTFLFLLDHLKRVAEKEAVNKMSLHNLATVFGPTLL 1212
Query: 99 RPSEKESKLPANPSQPITMTDSWSLEVMSQIQI 131
RPSEKESKLPANPSQPITMTDSWSLEVMSQ+Q+
Sbjct: 1213 RPSEKESKLPANPSQPITMTDSWSLEVMSQVQV 1245
>gi|229094128 active breakpoint cluster region-related protein
isoform c [Homo sapiens]
Length = 813
Score = 120 bits (301), Expect = 6e-28
Identities = 63/105 (60%), Positives = 80/105 (76%), Gaps = 10/105 (9%)
Query: 32 SDPLPPA-----ALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSL 86
+D L PA ALSDP AK++CM++LL SLP+ NL+TFLFLL+HL+R+AEKE +NKMSL
Sbjct: 688 TDRLYPAFMEGIALSDPAAKENCMMHLLRSLPDPNLITFLFLLEHLKRVAEKEPINKMSL 747
Query: 87 HNLGTVFGPTLLRPSEKESKLPANPSQPITMTDSWSLEVMSQIQI 131
HNL TVFGPTLLRPSE ESK + + D WS +VM+Q+Q+
Sbjct: 748 HNLATVFGPTLLRPSEVESK-----AHLTSAADIWSHDVMAQVQV 787
>gi|38679957 active breakpoint cluster region-related protein
isoform a [Homo sapiens]
Length = 859
Score = 120 bits (301), Expect = 6e-28
Identities = 63/105 (60%), Positives = 80/105 (76%), Gaps = 10/105 (9%)
Query: 32 SDPLPPA-----ALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSL 86
+D L PA ALSDP AK++CM++LL SLP+ NL+TFLFLL+HL+R+AEKE +NKMSL
Sbjct: 734 TDRLYPAFMEGIALSDPAAKENCMMHLLRSLPDPNLITFLFLLEHLKRVAEKEPINKMSL 793
Query: 87 HNLGTVFGPTLLRPSEKESKLPANPSQPITMTDSWSLEVMSQIQI 131
HNL TVFGPTLLRPSE ESK + + D WS +VM+Q+Q+
Sbjct: 794 HNLATVFGPTLLRPSEVESK-----AHLTSAADIWSHDVMAQVQV 833
>gi|38679954 active breakpoint cluster region-related protein
isoform b [Homo sapiens]
Length = 822
Score = 120 bits (301), Expect = 6e-28
Identities = 63/105 (60%), Positives = 80/105 (76%), Gaps = 10/105 (9%)
Query: 32 SDPLPPA-----ALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSL 86
+D L PA ALSDP AK++CM++LL SLP+ NL+TFLFLL+HL+R+AEKE +NKMSL
Sbjct: 697 TDRLYPAFMEGIALSDPAAKENCMMHLLRSLPDPNLITFLFLLEHLKRVAEKEPINKMSL 756
Query: 87 HNLGTVFGPTLLRPSEKESKLPANPSQPITMTDSWSLEVMSQIQI 131
HNL TVFGPTLLRPSE ESK + + D WS +VM+Q+Q+
Sbjct: 757 HNLATVFGPTLLRPSEVESK-----AHLTSAADIWSHDVMAQVQV 796
>gi|226693398 Rho GTPase activating protein 27 isoform b [Homo
sapiens]
Length = 521
Score = 56.2 bits (134), Expect = 1e-08
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 40 LSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLR 99
L D + C+ +L+ SLP N T L HL R+ E N+MS+ ++ VFGPTLLR
Sbjct: 429 LQDQARRSRCVRDLVRSLPAPNHDTLRMLFQHLCRVIEHGEQNRMSVQSVAIVFGPTLLR 488
Query: 100 PSEKESKLP 108
P +E+ +P
Sbjct: 489 PEVEETSMP 497
>gi|40548322 Rho GTPase activating protein 27 isoform a [Homo
sapiens]
Length = 548
Score = 56.2 bits (134), Expect = 1e-08
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 40 LSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLR 99
L D + C+ +L+ SLP N T L HL R+ E N+MS+ ++ VFGPTLLR
Sbjct: 456 LQDQARRSRCVRDLVRSLPAPNHDTLRMLFQHLCRVIEHGEQNRMSVQSVAIVFGPTLLR 515
Query: 100 PSEKESKLP 108
P +E+ +P
Sbjct: 516 PEVEETSMP 524
>gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo
sapiens]
Length = 731
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 39 ALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLL 98
ALS+ S + L+ S+P+ N T +LL+HL R+ N+M+ HNLG VFGPTL
Sbjct: 640 ALSESEQCLSQIQELIGSMPKPNHDTLRYLLEHLCRVIAHSDKNRMTPHNLGIVFGPTLF 699
Query: 99 RPSEKESKLPANPSQP 114
RP ++ S A+ P
Sbjct: 700 RPEQETSDPAAHALYP 715
>gi|122939149 Rho GTPase activating protein 9 isoform 3 [Homo
sapiens]
Length = 547
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 39 ALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLL 98
ALS+ S + L+ S+P+ N T +LL+HL R+ N+M+ HNLG VFGPTL
Sbjct: 456 ALSESEQCLSQIQELIGSMPKPNHDTLRYLLEHLCRVIAHSDKNRMTPHNLGIVFGPTLF 515
Query: 99 RPSEKESKLPANPSQP 114
RP ++ S A+ P
Sbjct: 516 RPEQETSDPAAHALYP 531
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 55.8 bits (133), Expect = 2e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 33 DPLPPAALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTV 92
D + A+L +P A+ + + S LP NL +L+ L R+AE++ VNKM+ N+ V
Sbjct: 367 DWMRAASLKEPGARLQALQEVCSRLPPENLSNLRYLMKFLARLAEEQEVNKMTPSNIAIV 426
Query: 93 FGPTLLRPSEKE 104
GP LL P EKE
Sbjct: 427 LGPNLLWPPEKE 438
>gi|91208437 GEM interacting protein [Homo sapiens]
Length = 970
Score = 55.5 bits (132), Expect = 3e-08
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 31 GSDPLPPAALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLG 90
G DP P+ + + + LL LP++N T L+ HL R+A + NKMS +NLG
Sbjct: 655 GDDPGTPSPSPEVIRS---LKTLLVQLPDSNYNTLRHLVAHLFRVAARFMENKMSANNLG 711
Query: 91 TVFGPTLLRPSEKESKLPANP 111
VFGPTLLRP + A P
Sbjct: 712 IVFGPTLLRPPDGPRAASAIP 732
>gi|47834348 minor histocompatibility antigen HA-1 [Homo sapiens]
Length = 1136
Score = 54.3 bits (129), Expect = 6e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Query: 44 VAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEK 103
VA + LL LP N + +LL HL R+ E E NKM+ NLG VFGPTLLRP
Sbjct: 885 VALAGRLRELLRDLPPENRASLQYLLRHLRRIVEVEQDNKMTPGNLGIVFGPTLLRPRPT 944
Query: 104 ES 105
E+
Sbjct: 945 EA 946
>gi|203097003 Rho GTPase activating protein 21 [Homo sapiens]
Length = 1958
Score = 52.0 bits (123), Expect = 3e-07
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 42 DPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPS 101
DP+ + + L+ LPE + T FL HL+ +AE NKM NL VFGPTL+R S
Sbjct: 1251 DPLDRLKTLKRLIHDLPEHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIVFGPTLVRTS 1310
Query: 102 E 102
E
Sbjct: 1311 E 1311
>gi|208022687 GTPase regulator associated with the focal adhesion
kinase pp125 isoform b [Homo sapiens]
Length = 759
Score = 51.2 bits (121), Expect = 5e-07
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 38 AALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTL 97
A L + ++ S + +L+ LPE N L++HL +A N M++ NLG VFGPTL
Sbjct: 477 AKLENQESRVSEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPTL 536
Query: 98 LRPSEK 103
LRP E+
Sbjct: 537 LRPQEE 542
>gi|7662208 GTPase regulator associated with the focal adhesion
kinase pp125 isoform a [Homo sapiens]
Length = 814
Score = 51.2 bits (121), Expect = 5e-07
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 38 AALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTL 97
A L + ++ S + +L+ LPE N L++HL +A N M++ NLG VFGPTL
Sbjct: 477 AKLENQESRVSEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPTL 536
Query: 98 LRPSEK 103
LRP E+
Sbjct: 537 LRPQEE 542
>gi|4502813 chimerin (chimaerin) 1 isoform a [Homo sapiens]
Length = 459
Score = 50.1 bits (118), Expect = 1e-06
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 38 AALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTL 97
A + DP + + L LP A+ T +L+ HL+R+ E N M+ NLG VFGPTL
Sbjct: 367 AKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTL 426
Query: 98 LRPSEKESKLPAN 110
+R E ++ N
Sbjct: 427 MRSPELDAMAALN 439
>gi|209364623 chimerin (chimaerin) 1 isoform b [Homo sapiens]
Length = 433
Score = 50.1 bits (118), Expect = 1e-06
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 38 AALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTL 97
A + DP + + L LP A+ T +L+ HL+R+ E N M+ NLG VFGPTL
Sbjct: 341 AKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTL 400
Query: 98 LRPSEKESKLPAN 110
+R E ++ N
Sbjct: 401 MRSPELDAMAALN 413
>gi|50843948 Rho GTPase activating protein 10 [Homo sapiens]
Length = 786
Score = 49.7 bits (117), Expect = 1e-06
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 33 DPLPPAALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTV 92
D + PA P ++ + + L+ LPE N L+ HL ++ N M++ NLG V
Sbjct: 478 DFIVPAKSGSPESRVNAIHFLVHKLPEKNKEMLDILVKHLTNVSNHSKQNLMTVANLGVV 537
Query: 93 FGPTLLRPSEK 103
FGPTL+RP E+
Sbjct: 538 FGPTLMRPQEE 548
>gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens]
Length = 1261
Score = 49.3 bits (116), Expect = 2e-06
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 52 NLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRP 100
+LL LP +N + FL+ HL+R+ + NKM+ NLG +FGP+L+RP
Sbjct: 805 DLLRQLPASNFNSLHFLIVHLKRVVDHAEENKMNSKNLGVIFGPSLIRP 853
>gi|4757980 beta chimerin isoform 2 [Homo sapiens]
Length = 468
Score = 48.1 bits (113), Expect = 4e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 38 AALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTL 97
A +S+ + + +L LP A+ T +L+ HL+++ E N M+ NLG VFGPTL
Sbjct: 376 AKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTL 435
Query: 98 LRPSE 102
+RP E
Sbjct: 436 MRPPE 440
>gi|91106928 beta chimerin isoform 1 [Homo sapiens]
Length = 332
Score = 48.1 bits (113), Expect = 4e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 38 AALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTL 97
A +S+ + + +L LP A+ T +L+ HL+++ E N M+ NLG VFGPTL
Sbjct: 240 AKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTL 299
Query: 98 LRPSE 102
+RP E
Sbjct: 300 MRPPE 304
>gi|34013590 Rho GTPase activating protein 2 [Homo sapiens]
Length = 698
Score = 47.0 bits (110), Expect = 9e-06
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 54 LSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEKESKLPANPSQ 113
+S+LP+AN ++ L+ + VNKMS+ NL TVFGP +LRP ++
Sbjct: 273 VSNLPQANYNLLRYICKFLDEVQAYSNVNKMSVQNLATVFGPNILRPQVED--------- 323
Query: 114 PITMTDSWSL 123
P+T+ + SL
Sbjct: 324 PVTIMEGTSL 333
>gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo
sapiens]
Length = 1194
Score = 47.0 bits (110), Expect = 9e-06
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 51 LNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEKES 105
++LL LPE T LLDHL+ +A VNKM+ NL FGP LL ++ S
Sbjct: 940 VDLLDCLPEIEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLSQRQEPS 994
>gi|26986534 Rho GTPase activating protein 12 [Homo sapiens]
Length = 846
Score = 46.6 bits (109), Expect = 1e-05
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 38 AALSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTL 97
A +P + + + +L+ LP+ N T L HL R+ E N+M+ ++ VFGPTL
Sbjct: 753 AIKQEPRQRVAAVKDLIRQLPKPNQDTMQILFRHLRRVIENGEKNRMTYQSIAIVFGPTL 812
Query: 98 LRPSEKES 105
L+P EKE+
Sbjct: 813 LKP-EKET 819
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 44.7 bits (104), Expect = 4e-05
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 40 LSDPVAKKSCMLNLLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLR 99
+ D + + L+ LP T FL+ HL+ +A+ NKM NL VFGPTL+R
Sbjct: 913 IEDARERMRTLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLVR 972
Query: 100 PSE 102
SE
Sbjct: 973 TSE 975
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 44.7 bits (104), Expect = 4e-05
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 53 LLSSLPEANLLTFLFLLDHLERMAEKEAVNKMSLHNLGTVFGPTLLRPSEKESKLPANPS 112
LLS LP+ T LLDHL ++ A N+M+ NL FGP LL + ++ A S
Sbjct: 517 LLSCLPDVERATLTLLLDHLRLVSSFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSS 576
Query: 113 QP 114
P
Sbjct: 577 GP 578
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,471,892
Number of Sequences: 37866
Number of extensions: 315887
Number of successful extensions: 1072
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 107
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.