Guide to the Human Genome
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Name: LOC100292941 Sequence: fasta or formatted (181aa) NCBI GI: 239757684
Description:

PREDICTED: hypothetical protein

Referenced in:

Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         14           2
 C cysteine            2.8          5           1
 D aspartate           2.2          4           1
 E glutamate           5.5         10           1
 F phenylalanine       2.2          4           1
 G glycine             5.5         10           2
 H histidine           1.7          3           1
 I isoleucine          2.8          5           1
 K lysine              3.9          7           1
 L leucine            17.1         31           3
 M methionine          3.9          7           2
 N asparagine          5.0          9           1
 P proline             8.3         15           2
 Q glutamine           3.3          6           1
 R arginine            7.7         14           1
 S serine              8.3         15           1
 T threonine           5.0          9           1
 V valine              5.5         10           2
 W tryptophan          1.7          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290826          1.000   PREDICTED: hypothetical protein XP_002348160 
LOC100287161          1.000   PREDICTED: hypothetical protein XP_002343833 
LOC100289600          0.956   PREDICTED: hypothetical protein XP_002343826 
BCR                   0.425   breakpoint cluster region isoform 2 
BCR                   0.425   breakpoint cluster region isoform 1 
ABR                   0.257   active breakpoint cluster region-related  protein i...
ABR                   0.257   active breakpoint cluster region-related  protein is...
ABR                   0.257   active breakpoint cluster region-related  protein is...
ARHGAP27              0.094   Rho GTPase activating protein 27 isoform b 
ARHGAP27              0.094   Rho GTPase activating protein 27 isoform a 
SH3BP1                0.088   SH3-domain binding protein 1 
ARHGAP21              0.080   Rho GTPase activating protein 21 
ARHGAP9               0.074   Rho GTPase activating protein 9 isoform 1 
GMIP                  0.074   GEM interacting protein 
ARHGAP9               0.074   Rho GTPase activating protein 9 isoform 3 
CHN2                  0.071   beta chimerin isoform 2 
CHN2                  0.071   beta chimerin isoform 1 
HMHA1                 0.071   minor histocompatibility antigen HA-1 
ARHGAP26              0.065   GTPase regulator associated with the focal adhesion...
ARHGAP26              0.065   GTPase regulator associated with the focal adhesion k...
ARHGAP22              0.065   Rho GTPase activating protein 2 
ARHGAP12              0.065   Rho GTPase activating protein 12 
CHN1                  0.065   chimerin (chimaerin) 1 isoform a 
CHN1                  0.065   chimerin (chimaerin) 1 isoform b 
ARHGAP10              0.059   Rho GTPase activating protein 10 
SYDE2                 0.059   synapse defective 1, Rho GTPase, homolog 2 
ARHGAP23              0.059   Rho GTPase activating protein 23 
ARHGAP24              0.059   Rho GTPase activating protein 24 isoform 3 
ARHGAP24              0.059   Rho GTPase activating protein 24 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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