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Search of human proteins with 239746447
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746447 PREDICTED: hypothetical protein XP_002344225 [Homo
sapiens]
(319 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757446 PREDICTED: similar to mCG146261 [Homo sapiens] 648 0.0
gi|239751965 PREDICTED: similar to mCG146261 [Homo sapiens] 648 0.0
gi|239746447 PREDICTED: hypothetical protein XP_002344225 [Homo ... 648 0.0
gi|12056463 coagulation factor VIII-associated protein [Homo sap... 40 0.003
gi|56090586 coagulation factor VIII-associated (intronic transcr... 40 0.003
gi|56090588 coagulation factor VIII-associated (intronic transcr... 40 0.003
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 38 0.010
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.023
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.023
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.023
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 37 0.023
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 36 0.040
gi|239755172 PREDICTED: hypothetical protein [Homo sapiens] 36 0.052
gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo ... 36 0.052
gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo ... 36 0.052
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 35 0.088
gi|31543535 R3H domain containing 1 [Homo sapiens] 35 0.12
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 34 0.20
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 34 0.20
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 34 0.20
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 34 0.20
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 34 0.20
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 34 0.20
gi|223029432 solute carrier family 2 (facilitated glucose transp... 34 0.20
gi|223029430 solute carrier family 2 (facilitated glucose transp... 34 0.20
gi|50428940 mediator complex subunit 25 [Homo sapiens] 33 0.34
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 33 0.34
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 33 0.34
gi|5174633 receptor for egg jelly-like protein precursor [Homo s... 33 0.34
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 33 0.34
>gi|239757446 PREDICTED: similar to mCG146261 [Homo sapiens]
Length = 319
Score = 648 bits (1672), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MGRAGWGVCCRVLGGAGRAVLGVVLHVLQRLRAVGRKGNARLEGGGCQVLGFERVTWFAV 60
MGRAGWGVCCRVLGGAGRAVLGVVLHVLQRLRAVGRKGNARLEGGGCQVLGFERVTWFAV
Sbjct: 1 MGRAGWGVCCRVLGGAGRAVLGVVLHVLQRLRAVGRKGNARLEGGGCQVLGFERVTWFAV 60
Query: 61 PDQDGHGHPARRGQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVP 120
PDQDGHGHPARRGQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVP
Sbjct: 61 PDQDGHGHPARRGQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVP 120
Query: 121 LLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPP 180
LLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPP
Sbjct: 121 LLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPP 180
Query: 181 HPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHG 240
HPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHG
Sbjct: 181 HPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHG 240
Query: 241 LGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGPLGWLGPLV 300
LGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGPLGWLGPLV
Sbjct: 241 LGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGPLGWLGPLV 300
Query: 301 LFLRTFGHRALLIVGVRQV 319
LFLRTFGHRALLIVGVRQV
Sbjct: 301 LFLRTFGHRALLIVGVRQV 319
>gi|239751965 PREDICTED: similar to mCG146261 [Homo sapiens]
Length = 319
Score = 648 bits (1672), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MGRAGWGVCCRVLGGAGRAVLGVVLHVLQRLRAVGRKGNARLEGGGCQVLGFERVTWFAV 60
MGRAGWGVCCRVLGGAGRAVLGVVLHVLQRLRAVGRKGNARLEGGGCQVLGFERVTWFAV
Sbjct: 1 MGRAGWGVCCRVLGGAGRAVLGVVLHVLQRLRAVGRKGNARLEGGGCQVLGFERVTWFAV 60
Query: 61 PDQDGHGHPARRGQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVP 120
PDQDGHGHPARRGQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVP
Sbjct: 61 PDQDGHGHPARRGQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVP 120
Query: 121 LLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPP 180
LLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPP
Sbjct: 121 LLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPP 180
Query: 181 HPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHG 240
HPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHG
Sbjct: 181 HPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHG 240
Query: 241 LGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGPLGWLGPLV 300
LGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGPLGWLGPLV
Sbjct: 241 LGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGPLGWLGPLV 300
Query: 301 LFLRTFGHRALLIVGVRQV 319
LFLRTFGHRALLIVGVRQV
Sbjct: 301 LFLRTFGHRALLIVGVRQV 319
>gi|239746447 PREDICTED: hypothetical protein XP_002344225 [Homo
sapiens]
Length = 319
Score = 648 bits (1672), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MGRAGWGVCCRVLGGAGRAVLGVVLHVLQRLRAVGRKGNARLEGGGCQVLGFERVTWFAV 60
MGRAGWGVCCRVLGGAGRAVLGVVLHVLQRLRAVGRKGNARLEGGGCQVLGFERVTWFAV
Sbjct: 1 MGRAGWGVCCRVLGGAGRAVLGVVLHVLQRLRAVGRKGNARLEGGGCQVLGFERVTWFAV 60
Query: 61 PDQDGHGHPARRGQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVP 120
PDQDGHGHPARRGQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVP
Sbjct: 61 PDQDGHGHPARRGQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVP 120
Query: 121 LLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPP 180
LLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPP
Sbjct: 121 LLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPP 180
Query: 181 HPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHG 240
HPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHG
Sbjct: 181 HPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHG 240
Query: 241 LGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGPLGWLGPLV 300
LGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGPLGWLGPLV
Sbjct: 241 LGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGPLGWLGPLV 300
Query: 301 LFLRTFGHRALLIVGVRQV 319
LFLRTFGHRALLIVGVRQV
Sbjct: 301 LFLRTFGHRALLIVGVRQV 319
>gi|12056463 coagulation factor VIII-associated protein [Homo
sapiens]
Length = 371
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/131 (30%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 73 GQGRHLHTFLG-PGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVPLLPKAPLQLVG 131
G LH LG P A + + L L G+ A AG + Q+P LP A LQ +G
Sbjct: 126 GAAVRLHLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALG 185
Query: 132 LRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPPHPPPVPGRGSL 191
+ + LLA A + ++ L G +P PP PPP P G
Sbjct: 186 -----EAASCQLLARDYTGALAVFTRMQRLAREHGS-----HPVQSLPPPPPPAPQPGPG 235
Query: 192 ATSRAPGQSLP 202
AT P LP
Sbjct: 236 ATPALPAALLP 246
>gi|56090586 coagulation factor VIII-associated (intronic
transcript) 3 [Homo sapiens]
Length = 371
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/131 (30%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 73 GQGRHLHTFLG-PGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVPLLPKAPLQLVG 131
G LH LG P A + + L L G+ A AG + Q+P LP A LQ +G
Sbjct: 126 GAAVRLHLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALG 185
Query: 132 LRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPPHPPPVPGRGSL 191
+ + LLA A + ++ L G +P PP PPP P G
Sbjct: 186 -----EAASCQLLARDYTGALAVFTRMQRLAREHGS-----HPVQSLPPPPPPAPQPGPG 235
Query: 192 ATSRAPGQSLP 202
AT P LP
Sbjct: 236 ATPALPAALLP 246
>gi|56090588 coagulation factor VIII-associated (intronic
transcript) 2 [Homo sapiens]
Length = 371
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/131 (30%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 73 GQGRHLHTFLG-PGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVPLLPKAPLQLVG 131
G LH LG P A + + L L G+ A AG + Q+P LP A LQ +G
Sbjct: 126 GAAVRLHLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALG 185
Query: 132 LRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPPHPPPVPGRGSL 191
+ + LLA A + ++ L G +P PP PPP P G
Sbjct: 186 -----EAASCQLLARDYTGALAVFTRMQRLAREHGS-----HPVQSLPPPPPPAPQPGPG 235
Query: 192 ATSRAPGQSLP 202
AT P LP
Sbjct: 236 ATPALPAALLP 246
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 38.1 bits (87), Expect = 0.010
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 164 RAGGRVSYLYPGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIY-- 221
R G S P P+PP PPP P S + P S P AG P+VR+ ++
Sbjct: 43 RRSGPASAQTPVPPQPPQPPPGPASASGPGAAGPASSPPPAGPGPGPALPAVRLSLVRLG 102
Query: 222 --QPLGASNP---GCGCRNGGDH---GLGSQVLLLTG 250
GA P G +GGD LG ++ G
Sbjct: 103 EPDSAGAGEPPATPAGLGSGGDRVCFNLGRELYFYPG 139
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 37.0 bits (84), Expect = 0.023
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
Query: 174 PGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLR-LEPSVRVDIIYQPLGASNPGCG 232
P P PP PPP P + ++ +P + G GL L P ++ L + G
Sbjct: 652 PPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSLLGSLG 711
Query: 233 CRNGGDHGLGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGP 292
R G + + + L+G G + A++ + Q ++ V L P
Sbjct: 712 ARAGSSESIAAFIQRLSGSSNIFEPGADGALGFFGALLSLLCQNFSMVDVVMLLHGHFQP 771
Query: 293 LGWLGPLVLFLRTFGHRALL 312
L L P LR+F H+ L
Sbjct: 772 LQRLQPQ---LRSFFHQHYL 788
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 37.0 bits (84), Expect = 0.023
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
Query: 174 PGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLR-LEPSVRVDIIYQPLGASNPGCG 232
P P PP PPP P + ++ +P + G GL L P ++ L + G
Sbjct: 652 PPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSLLGSLG 711
Query: 233 CRNGGDHGLGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGP 292
R G + + + L+G G + A++ + Q ++ V L P
Sbjct: 712 ARAGSSESIAAFIQRLSGSSNIFEPGADGALGFFGALLSLLCQNFSMVDVVMLLHGHFQP 771
Query: 293 LGWLGPLVLFLRTFGHRALL 312
L L P LR+F H+ L
Sbjct: 772 LQRLQPQ---LRSFFHQHYL 788
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 37.0 bits (84), Expect = 0.023
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
Query: 174 PGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLR-LEPSVRVDIIYQPLGASNPGCG 232
P P PP PPP P + ++ +P + G GL L P ++ L + G
Sbjct: 652 PPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSLLGSLG 711
Query: 233 CRNGGDHGLGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGP 292
R G + + + L+G G + A++ + Q ++ V L P
Sbjct: 712 ARAGSSESIAAFIQRLSGSSNIFEPGADGALGFFGALLSLLCQNFSMVDVVMLLHGHFQP 771
Query: 293 LGWLGPLVLFLRTFGHRALL 312
L L P LR+F H+ L
Sbjct: 772 LQRLQPQ---LRSFFHQHYL 788
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 37.0 bits (84), Expect = 0.023
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
Query: 174 PGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLR-LEPSVRVDIIYQPLGASNPGCG 232
P P PP PPP P + ++ +P + G GL L P ++ L + G
Sbjct: 658 PPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSLLGSLG 717
Query: 233 CRNGGDHGLGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGP 292
R G + + + L+G G + A++ + Q ++ V L P
Sbjct: 718 ARAGSSESIAAFIQRLSGSSNIFEPGADGALGFFGALLSLLCQNFSMVDVVMLLHGHFQP 777
Query: 293 LGWLGPLVLFLRTFGHRALL 312
L L P LR+F H+ L
Sbjct: 778 LQRLQPQ---LRSFFHQHYL 794
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 36.2 bits (82), Expect = 0.040
Identities = 39/137 (28%), Positives = 51/137 (37%), Gaps = 21/137 (15%)
Query: 73 GQGRHLHTFLGPGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQVPLLPKAPLQLVGL 132
G+ L+ +G AL + + EP RE DEA Q+ G P P P
Sbjct: 141 GRLEPLYERVGAPALRPLVIKQEP------REEDEAKQLALAGL--FPYQPPPP------ 186
Query: 133 RLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPPHPPPVPGRGSLA 192
P S PP A ++ G +L PGHP PP P PVP
Sbjct: 187 ------PPPSHPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPP-PTPVPSPHPAP 239
Query: 193 TSRAPGQSLPAAGVRGL 209
A G P + ++GL
Sbjct: 240 ALGAAGLPGPGSALKGL 256
Score = 30.0 bits (66), Expect = 2.8
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 25/126 (19%)
Query: 115 GRRQVPLLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDR---------- 164
G Q P P AP L G+ E + + + A + PAA + +
Sbjct: 38 GPAQPPAPPAAPEPLGGIC--EHETSIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAV 95
Query: 165 ----AGGRVSYLYPGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDII 220
GG + YPG P P +PG A PG AAG RLEP +
Sbjct: 96 GPTGGGGGGDFDYPGAPAGPGGAVMPGG---AHGPPPGYGCAAAGYLDGRLEP------L 146
Query: 221 YQPLGA 226
Y+ +GA
Sbjct: 147 YERVGA 152
>gi|239755172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 35.8 bits (81), Expect = 0.052
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 177 PKPPHPPPVPGRGSLATSRAPGQSLPAAGVR---GLRLEPSVRVDIIYQPLGAS 227
P PP PPPVPG + ++S PG S P+ R LR +R D + G+S
Sbjct: 142 PPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGSS 195
>gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo
sapiens]
Length = 295
Score = 35.8 bits (81), Expect = 0.052
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 177 PKPPHPPPVPGRGSLATSRAPGQSLPAAGVR---GLRLEPSVRVDIIYQPLGAS 227
P PP PPPVPG + ++S PG S P+ R LR +R D + G+S
Sbjct: 172 PPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGSS 225
>gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo
sapiens]
Length = 295
Score = 35.8 bits (81), Expect = 0.052
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 177 PKPPHPPPVPGRGSLATSRAPGQSLPAAGVR---GLRLEPSVRVDIIYQPLGAS 227
P PP PPPVPG + ++S PG S P+ R LR +R D + G+S
Sbjct: 172 PPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGSS 225
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 35.0 bits (79), Expect = 0.088
Identities = 49/162 (30%), Positives = 58/162 (35%), Gaps = 30/162 (18%)
Query: 84 PGALHLVAVVLEPDLDLRGREADEAGQVFALGRRQV--PLLPKAPLQLVGLRLGEKHSPL 141
PGA+ VA G EA A + ALG R+ P P L+ V +LGE PL
Sbjct: 115 PGAVQPVA----------GAEAAPAATLAALGGRRPGPPEEPPRELESVPSKLGEP-PPL 163
Query: 142 SLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPPHPPPVPGRGSLATSRAPGQSL 201
G G AGG G P+PP P G+G A R
Sbjct: 164 GEGGGGGGEGGG-----------AGGGSGEREGGAPQPPPPRGWRGKGVRAQQRG----- 207
Query: 202 PAAGVRGLRLEPSVRVDIIYQPLGASNPGCGCRNGGDHGLGS 243
+G G PS G+ N G G GG G GS
Sbjct: 208 -GSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGGGGS 248
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 34.7 bits (78), Expect = 0.12
Identities = 39/144 (27%), Positives = 52/144 (36%), Gaps = 25/144 (17%)
Query: 116 RRQVPLLPKAPLQLVGLR-----------LGEKHSPLSLL------AGVPPAARGLLVIV 158
R QVP P+ PL + LG + S +SL P AA +V
Sbjct: 515 RSQVPGPPQPPLPAPPQQPAANHIFSQDNLGSQFSHMSLARQPSADGSDPHAAMFQSTVV 574
Query: 159 RVLYDRAGGRVSYLYPGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLR---LEPSV 215
++G ++ P HP PP PPP P PGQ +P AG +P +
Sbjct: 575 LQSPQQSGYIMTAAPPPHPPPPPPPPPP-----PPPLPPGQPVPTAGYPASGHPVSQPVL 629
Query: 216 RVDIIYQPLGASNPGCGCRNGGDH 239
+ Q P C C G H
Sbjct: 630 QQQGYIQQPSPQMPACYCAPGHYH 653
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 33.9 bits (76), Expect = 0.20
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 174 PGHPKPPHPPPVPGRGSLATSRAPGQS----LPAAGVRGLRLEPSVRVDIIYQPLGASNP 229
P P PPP G+ A+ RAP S LPAA + G L P+ R+ +PL AS P
Sbjct: 767 PAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPAL-PARRLSRASRPLSASQP 825
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 33.9 bits (76), Expect = 0.20
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 174 PGHPKPPHPPP---VPGRGSLATSRAPGQSLPAAGVRGLRL 211
P P PP P P +P G A + PG AAG RG RL
Sbjct: 102 PSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRL 142
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 33.9 bits (76), Expect = 0.20
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 174 PGHPKPPHPPP---VPGRGSLATSRAPGQSLPAAGVRGLRL 211
P P PP P P +P G A + PG AAG RG RL
Sbjct: 85 PSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRL 125
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 33.9 bits (76), Expect = 0.20
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 174 PGHPKPPHPPP---VPGRGSLATSRAPGQSLPAAGVRGLRL 211
P P PP P P +P G A + PG AAG RG RL
Sbjct: 93 PSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRL 133
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 33.9 bits (76), Expect = 0.20
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 174 PGHPKPPHPPP---VPGRGSLATSRAPGQSLPAAGVRGLRL 211
P P PP P P +P G A + PG AAG RG RL
Sbjct: 85 PSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRL 125
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 33.9 bits (76), Expect = 0.20
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 174 PGHPKPPHPPP---VPGRGSLATSRAPGQSLPAAGVRGLRL 211
P P PP P P +P G A + PG AAG RG RL
Sbjct: 93 PSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRL 133
>gi|223029432 solute carrier family 2 (facilitated glucose
transporter), member 6 isoform 1 [Homo sapiens]
Length = 507
Score = 33.9 bits (76), Expect = 0.20
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 94 LEPDLDLRGREADEAGQVFALGRRQVPLLPKAPLQLVGLRLGEKHSPLSLLAG--VPPAA 151
L+PDL L +A G VF LG L L+G +L S + AG + A
Sbjct: 70 LDPDLHLTKSQASWFGSVFTLGAAAGGLSAMILNDLLGRKLSIMFSAVPSAAGYALMAGA 129
Query: 152 RGL--LVIVRVLYDRAGGRVSYLYPGHPKPPHPPPVPG 187
GL L++ R L AGG + P + PP V G
Sbjct: 130 HGLWMLLLGRTLTGFAGGLTAACIPVYVSEIAPPGVRG 167
>gi|223029430 solute carrier family 2 (facilitated glucose
transporter), member 6 isoform 2 [Homo sapiens]
Length = 445
Score = 33.9 bits (76), Expect = 0.20
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 94 LEPDLDLRGREADEAGQVFALGRRQVPLLPKAPLQLVGLRLGEKHSPLSLLAG--VPPAA 151
L+PDL L +A G VF LG L L+G +L S + AG + A
Sbjct: 70 LDPDLHLTKSQASWFGSVFTLGAAAGGLSAMILNDLLGRKLSIMFSAVPSAAGYALMAGA 129
Query: 152 RGL--LVIVRVLYDRAGGRVSYLYPGHPKPPHPPPVPG 187
GL L++ R L AGG + P + PP V G
Sbjct: 130 HGLWMLLLGRTLTGFAGGLTAACIPVYVSEIAPPGVRG 167
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 33.1 bits (74), Expect = 0.34
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 172 LYPGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGC 231
L PG P P PPP + SL ++ APG L G PS+ + P G S P
Sbjct: 328 LPPGPPGAPKPPPA-SQPSLVSTVAPGSGLAPTAQPG---APSMAGTV--APGGVSGPSP 381
Query: 232 GCRN----GGDHGLGSQVLLLTGVLKALGAGQPARV 263
GG + +++L +GVL+ +PA V
Sbjct: 382 AQLGAPALGGQQSVSNKLLAWSGVLEWQEKPKPASV 417
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 33.1 bits (74), Expect = 0.34
Identities = 37/127 (29%), Positives = 48/127 (37%), Gaps = 17/127 (13%)
Query: 174 PGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLGASNPGCGC 233
PGH PP PP PG ++ G A G RGL P QP +PG
Sbjct: 1290 PGHVGPPGPPGQPGPAGISAVGLKGDR-GATGERGLAGLPG-------QPGPPGHPGPPG 1341
Query: 234 RNGGDHGLGSQVLLLTGVLKALG-AGQPARVRVVAAVVEGVLQGQALHRVQGALPQRPGP 292
G D G + G G G P A + +GQA + + +P PG
Sbjct: 1342 EPGTDGAAGKE-----GPPGKQGFYGPPGPKGDPGAAGQ---KGQAGEKGRAGMPGGPGK 1393
Query: 293 LGWLGPL 299
G +GP+
Sbjct: 1394 SGSMGPV 1400
Score = 29.3 bits (64), Expect = 4.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 174 PGHPKPPHPPPVPG-RGSLATSRAPGQSLPAAGVRGLRLE 212
PG P PP PP VPG +G + PGQ A + L +E
Sbjct: 909 PGIPGPPGPPGVPGLQGVPGNNGLPGQPGLTAELGSLPIE 948
Score = 29.3 bits (64), Expect = 4.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 174 PGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRG 208
PG P PP PP PG+ P + G+RG
Sbjct: 1158 PGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRG 1192
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 33.1 bits (74), Expect = 0.34
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 120 PLLPKAPLQLVGLRLGEKHSPLSLLAGVPPAARGLLVIVRVLYDRAGGR----VSYLYPG 175
P +P++P L G R K+ PL VP + V++ L + AG R L P
Sbjct: 39 PGMPESPGHLTGRR---KNYPLRKRPLVPEKPKACKVLLTRLENVAGPRSADEADELPPD 95
Query: 176 HPKPPHPPPVPGRGSLATSRAPG-QSLPAAGVRGLRLE 212
PKPP P P LA R SL A + L LE
Sbjct: 96 LPKPPSPAPSSEDPGLAQPRKRRLASLNAEALNNLLLE 133
>gi|5174633 receptor for egg jelly-like protein precursor [Homo
sapiens]
Length = 2253
Score = 33.1 bits (74), Expect = 0.34
Identities = 38/119 (31%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 183 PPVPGRGSLATSRAPG---QSLPAAGVRGLRLEPSVRVDIIYQPLGA--SNPGCGCRNGG 237
PPVP A S APG + P GVRG R S+R + + GA S G C G
Sbjct: 24 PPVPRGAQAAVSGAPGGLLRGAPGLGVRGGRALLSLRPSAV-RAGGAVLSGRGSLCFPHG 82
Query: 238 DHGLGSQVLLLTGVLKALGAGQPARVRVVAAVVEGVLQGQALHRVQGA-LPQRPGPLGW 295
G L L +L A PA + ++ +G L LP+ PG L W
Sbjct: 83 GTGRRWYCLDLRVLLSAQRLPWPAAPALALVDLQLSARGGRLSLTWSVRLPRSPGRLAW 141
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.34
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 139 SPLSLLAGVPPAARGLLVIVRVLYDRAGGRVSYLYPGHPKPPHPPPVPGRGSLATSRAPG 198
+P LLA +P A L +++ L R G S P+P PP P + AT AP
Sbjct: 3 APAELLAALPALATALALLLAWLLVRRGAAAS------PEPARAPPEPAPPAEATG-APA 55
Query: 199 QSLPAAGVRGLRLEPSVRVDIIYQPLGASNPG 230
S P A EP+ P G PG
Sbjct: 56 PSRPCAP------EPAA------SPAGPEEPG 75
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.145 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,441,961
Number of Sequences: 37866
Number of extensions: 912088
Number of successful extensions: 6409
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 5864
Number of HSP's gapped (non-prelim): 685
length of query: 319
length of database: 18,247,518
effective HSP length: 102
effective length of query: 217
effective length of database: 14,385,186
effective search space: 3121585362
effective search space used: 3121585362
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.