Search of human proteins with 239746280

Search of human proteins with 239746280

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746280 PREDICTED: hypothetical protein XP_002343722 [Homo
sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239746280 PREDICTED: hypothetical protein XP_002343722 [Homo ...   376   e-105
gi|239751789 PREDICTED: hypothetical protein [Homo sapiens]           348   2e-96
gi|239746652 PREDICTED: hypothetical protein [Homo sapiens]            32   0.24 
gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho...    31   0.70 
gi|7662162 ALEX2 protein [Homo sapiens]                                30   1.2  
gi|29540562 ALEX2 protein [Homo sapiens]                               30   1.2  
gi|209447073 synaptotagmin I [Homo sapiens]                            28   3.5  
gi|5032139 synaptotagmin I [Homo sapiens]                              28   3.5  
gi|209447070 synaptotagmin I [Homo sapiens]                            28   3.5  
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       28   3.5  
gi|94538350 protocadherin 17 precursor [Homo sapiens]                  28   4.6  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    28   5.9  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    28   5.9  
gi|41352705 kinesin family member 3C [Homo sapiens]                    28   5.9  
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    27   7.8  
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]        27   7.8  

>gi|239746280 PREDICTED: hypothetical protein XP_002343722 [Homo
           sapiens]
          Length = 186

 Score =  376 bits (965), Expect = e-105
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MADLDFGNYTVPGDAPTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAAREA 60
           MADLDFGNYTVPGDAPTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAAREA
Sbjct: 1   MADLDFGNYTVPGDAPTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAAREA 60

Query: 61  GESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPT 120
           GESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPT
Sbjct: 61  GESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPT 120

Query: 121 EATEPSTEGAGDGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHGSH 180
           EATEPSTEGAGDGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHGSH
Sbjct: 121 EATEPSTEGAGDGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHGSH 180

Query: 181 GLTCCP 186
           GLTCCP
Sbjct: 181 GLTCCP 186


>gi|239751789 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 203

 Score =  348 bits (892), Expect = 2e-96
 Identities = 173/175 (98%), Positives = 173/175 (98%)

Query: 12  PGDAPTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGL 71
           P  APTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGL
Sbjct: 29  PPQAPTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGL 88

Query: 72  HGHASCLTGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPTEATEPSTEGAG 131
           HGHASCLTGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPTEATEPSTEGAG
Sbjct: 89  HGHASCLTGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPTEATEPSTEGAG 148

Query: 132 DGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHGSHGLTCCP 186
           DGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHGSHGLTCCP
Sbjct: 149 DGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHGSHGLTCCP 203


>gi|239746652 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1513

 Score = 32.3 bits (72), Expect = 0.24
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 35   ADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFV 94
            A  + KQ+A   +T    A G   E       +    HG A+ +    V  + AAQ G  
Sbjct: 1201 AQAIAKQDAAHGITNEDAAQGVTNEVAAQGVANEDAAHGVANEVAAHGVANEDAAQ-GVA 1259

Query: 95   TLLRAQ------VVYALAEDKVVTPVAIEVPTE--ATEPSTEGAGDGHEEVGIAIKEKPQ 146
              + AQ       V+ +A +  V  VA EV  +  A + + +G  +     G+A ++  Q
Sbjct: 1260 NEVAAQGVANEDAVHGVANEDAVQGVANEVEVQGIAHKDAIQGIANEDAAQGVANEDAAQ 1319

Query: 147  PLGRLQNHVSALG-GHPHAAH 166
             +    N V+A G  +  AAH
Sbjct: 1320 GVA---NEVAAHGVANEDAAH 1337


>gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo
            sapiens]
          Length = 2378

 Score = 30.8 bits (68), Expect = 0.70
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 35   ADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFV 94
            A  + KQ+A   +T    A G   E       +    HG A+ +    V  + AAQ G  
Sbjct: 2093 AQAIAKQDAAHGITKEDAAQGVTNEVAAQGVANEDAAHGVANEVAAHGVANEDAAQ-GVA 2151

Query: 95   TLLRAQVVYALAEDKVVTPVAIEVPTE-----------ATEPSTEGAGDGHEEVGIAIKE 143
              + AQ    +A +  V  VA EV  +           A E + +G  +     G+A ++
Sbjct: 2152 NEVAAQ---GVANEDAVQGVANEVEVQGIAHKDAIQGIANEDAAQGVANEVAAHGVANED 2208

Query: 144  KPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHG 178
              Q +    N V+A G     A +    + +AVHG
Sbjct: 2209 AAQGVA---NEVAAQGVANEDA-AQGVANEVAVHG 2239


>gi|7662162 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 18/111 (16%)

Query: 36  DTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVT 95
           DT+G +    A ++ +   GA  +A E+     AG+   A  + G  +    A   G   
Sbjct: 91  DTVGAEAVAPAASSAEAQSGAGSQAQEADG---AGVGPKAESVVGAAMASAIAPPPGVTE 147

Query: 96  LLRAQVVYALA-------------EDKVVTPVAIEVPTEATEPS--TEGAG 131
            L A    A+A               +   P    VPTEA  P+  TEG G
Sbjct: 148 ALGAAEAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPG 198


>gi|29540562 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 18/111 (16%)

Query: 36  DTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVT 95
           DT+G +    A ++ +   GA  +A E+     AG+   A  + G  +    A   G   
Sbjct: 91  DTVGAEAVAPAASSAEAQSGAGSQAQEADG---AGVGPKAESVVGAAMASAIAPPPGVTE 147

Query: 96  LLRAQVVYALA-------------EDKVVTPVAIEVPTEATEPS--TEGAG 131
            L A    A+A               +   P    VPTEA  P+  TEG G
Sbjct: 148 ALGAAEAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPG 198


>gi|209447073 synaptotagmin I [Homo sapiens]
          Length = 422

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 111 VTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEK 144
           VT VA  +P+ ATEP++   G+G E+    +KEK
Sbjct: 15  VTTVATVLPSNATEPAS--PGEGKEDAFSKLKEK 46


>gi|5032139 synaptotagmin I [Homo sapiens]
          Length = 422

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 111 VTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEK 144
           VT VA  +P+ ATEP++   G+G E+    +KEK
Sbjct: 15  VTTVATVLPSNATEPAS--PGEGKEDAFSKLKEK 46


>gi|209447070 synaptotagmin I [Homo sapiens]
          Length = 422

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 111 VTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEK 144
           VT VA  +P+ ATEP++   G+G E+    +KEK
Sbjct: 15  VTTVATVLPSNATEPAS--PGEGKEDAFSKLKEK 46


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 107  EDKVVTPVAIEVPTEATEPSTEGAG-------DGHEEVGIAIKEKPQPLG 149
            ++KV  P A+++P +    S +  G       +G EE  + IKEKP+  G
Sbjct: 4870 QEKVPEPEALDLPDDLNLDSEDKNGGEDTDNEEGEEENPLEIKEKPEEAG 4919


>gi|94538350 protocadherin 17 precursor [Homo sapiens]
          Length = 1159

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 79   TGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPTEATEP---------STEG 129
            TG++  C     +   T+L A V   L   + ++P+  EVP+ ++ P         ST+G
Sbjct: 993  TGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQEVPSASSSPTKACIEPCTSTKG 1052

Query: 130  AGDGHEEVGIAIKE 143
            + DG E    A+ E
Sbjct: 1053 SLDGCEAKPGALAE 1066


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 38   LGKQEAVVALTALKTAGGAAREAGESRTGSLAG--LHGHASCLTGRRVGCQAAAQEGFVT 95
            +G +E   +     T G +AR   +       G  L  HA CL G  +G  +  Q+    
Sbjct: 1508 VGLEEEAQSFAQFVTTGESARIKAKLTQIRRYGEELREHAQCLEGTILGHLSQQQKFEEN 1567

Query: 96   LLRAQVVYALAEDKVVTPVAIEVPTEATE 124
            L + Q   +  EDK+  P  I++ + ATE
Sbjct: 1568 LRKIQQSVSEFEDKLAVP--IKICSSATE 1594


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 38   LGKQEAVVALTALKTAGGAAREAGESRTGSLAG--LHGHASCLTGRRVGCQAAAQEGFVT 95
            +G +E   +     T G +AR   +       G  L  HA CL G  +G  +  Q+    
Sbjct: 1501 VGLEEEAQSFAQFVTTGESARIKAKLTQIRRYGEELREHAQCLEGTILGHLSQQQKFEEN 1560

Query: 96   LLRAQVVYALAEDKVVTPVAIEVPTEATE 124
            L + Q   +  EDK+  P  I++ + ATE
Sbjct: 1561 LRKIQQSVSEFEDKLAVP--IKICSSATE 1587


>gi|41352705 kinesin family member 3C [Homo sapiens]
          Length = 793

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 122 ATEPSTEGAGDGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGH 172
           A  PS+ G G G    G A  E+P+   ++   +SALG    A   +R  H
Sbjct: 264 AATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTH 314


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 119  PTEATEPSTEGAGDG--HEEVGIAIKEKPQPLGRL 151
            P+  T P+TEG GDG  + +  +   EK + LG+L
Sbjct: 1981 PSTPTTPTTEGEGDGLSYNQRSLQRWEKDEELGQL 2015


>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
          Length = 446

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 159 GGHPHAAHSHRQGHSLAVHGSHGLT 183
           GG  H  H H QG   AV+G+  LT
Sbjct: 420 GGRLHGVHQHYQGAGTAVNGTVPLT 444


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,336,657
Number of Sequences: 37866
Number of extensions: 311419
Number of successful extensions: 978
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 21
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.