Guide to the Human Genome
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Name: LOC100288940 Sequence: fasta or formatted (124aa) NCBI GI: 239745912
Description:

PREDICTED: hypothetical protein XP_002343615

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.9         21           2
 C cysteine            2.4          3           1
 D aspartate           5.6          7           2
 E glutamate           1.6          2           1
 F phenylalanine       3.2          4           1
 G glycine             8.1         10           2
 H histidine           3.2          4           1
 I isoleucine          0.0          0           0
 K lysine              1.6          2           1
 L leucine             8.9         11           2
 M methionine          0.8          1           1
 N asparagine          4.0          5           1
 P proline             8.9         11           2
 Q glutamine           4.8          6           1
 R arginine            7.3          9           1
 S serine              8.9         11           1
 T threonine           7.3          9           1
 V valine              3.2          4           1
 W tryptophan          1.6          2           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343615 
LOC100293967          1.000   PREDICTED: hypothetical protein 
LOC100291009          1.000   PREDICTED: hypothetical protein XP_002347838 
ASPSCR1               0.030   alveolar soft part sarcoma chromosome region, candid...
CHAT                  0.030   choline acetyltransferase isoform 2 
LOC100292793          0.030   PREDICTED: hypothetical protein 
LOC100290071          0.030   PREDICTED: hypothetical protein XP_002347957 
LOC100287600          0.030   PREDICTED: hypothetical protein XP_002343679 
AMOT                  0.030   angiomotin isoform 2 
AMOT                  0.030   angiomotin isoform 1 
PPL                   0.026   periplakin 
MBD6                  0.021   methyl-CpG binding domain protein 6 
LMF2                  0.021   lipase maturation factor 2 
WAC                   0.021   WW domain-containing adapter with a coiled-coil regi...
WAC                   0.021   WW domain-containing adapter with a coiled-coil regi...
SRRM2                 0.021   splicing coactivator subunit SRm300 
FOXD2                 0.017   forkhead box D2 
LOC100131811          0.017   PREDICTED: hypothetical protein 
LOC100131811          0.017   PREDICTED: hypothetical protein 
LOC100131811          0.017   PREDICTED: hypothetical protein 
TDP1                  0.017   tyrosyl-DNA phosphodiesterase 1 
TDP1                  0.017   tyrosyl-DNA phosphodiesterase 1 
ARMC5                 0.017   armadillo repeat containing 5 isoform b 
ARMC5                 0.017   armadillo repeat containing 5 isoform a 
MAP7D1                0.017   MAP7 domain containing 1 
LOC100130465          0.013   PREDICTED: hypothetical protein 
LOC100291624          0.013   PREDICTED: hypothetical protein XP_002345876 
LOC100130465          0.013   PREDICTED: hypothetical protein 
LOC100289712          0.013   PREDICTED: hypothetical protein XP_002346761 
LOC100130465          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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