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Search of human proteins with 239745791
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745791 PREDICTED: hypothetical protein XP_002343589 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745791 PREDICTED: hypothetical protein XP_002343589 [Homo ... 243 2e-65
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 41 2e-04
gi|157671951 solute carrier family 4, anion exchanger, member 3 ... 37 0.003
gi|157671953 solute carrier family 4, anion exchanger, member 3 ... 37 0.003
gi|169203012 PREDICTED: similar to hCG1820409 [Homo sapiens] 37 0.004
gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens] 37 0.004
gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens] 37 0.004
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 36 0.007
gi|239750710 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo ... 35 0.010
gi|145699105 connexin40.1 [Homo sapiens] 35 0.010
gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens] 35 0.013
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H... 34 0.028
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H... 34 0.028
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... 34 0.028
gi|148762978 similar to CG15216-PA [Homo sapiens] 34 0.028
gi|239752841 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|239747371 PREDICTED: hypothetical protein XP_002346571 [Homo ... 33 0.037
gi|239741196 PREDICTED: hypothetical protein XP_002342133 [Homo ... 33 0.037
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 33 0.048
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 33 0.048
gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo ... 33 0.063
gi|224028248 non-POU domain containing, octamer-binding isoform ... 32 0.082
gi|224028246 non-POU domain containing, octamer-binding isoform ... 32 0.082
gi|224028244 non-POU domain containing, octamer-binding isoform ... 32 0.082
gi|34932414 non-POU domain containing, octamer-binding isoform 1... 32 0.082
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 32 0.082
gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 32 0.11
gi|239756914 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 32 0.11
>gi|239745791 PREDICTED: hypothetical protein XP_002343589 [Homo
sapiens]
Length = 117
Score = 243 bits (621), Expect = 2e-65
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MPVLLVVLGRERSGKEGLCIRGTALGANPLPPTLRLRPVLLAPRQALSRRRRRRRRRRRR 60
MPVLLVVLGRERSGKEGLCIRGTALGANPLPPTLRLRPVLLAPRQALSRRRRRRRRRRRR
Sbjct: 1 MPVLLVVLGRERSGKEGLCIRGTALGANPLPPTLRLRPVLLAPRQALSRRRRRRRRRRRR 60
Query: 61 HRPFCQPGNGSAPTVPSVREQNGGGGKRRREQGAERCETHAPLGSPPPAGPRKGGSG 117
HRPFCQPGNGSAPTVPSVREQNGGGGKRRREQGAERCETHAPLGSPPPAGPRKGGSG
Sbjct: 61 HRPFCQPGNGSAPTVPSVREQNGGGGKRRREQGAERCETHAPLGSPPPAGPRKGGSG 117
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 40.8 bits (94), Expect = 2e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 44 RQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQNGGGGKRRREQGAERCETH--- 100
R++ SR +RRRRRR P + S + ++GGG K+++++ R E
Sbjct: 598 RRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGD 657
Query: 101 ----APLGSPPPAGPRKGG 115
AP +PPP+G G
Sbjct: 658 GSEKAPAPAPPPSGSTSCG 676
Score = 29.6 bits (65), Expect = 0.53
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 26 GANPLPPTLRLRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQNGGG 85
G +P P + R VL R + ++ R R + S+ S R+ GG
Sbjct: 717 GPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKALDGG 776
Query: 86 GKRR-------REQGAERC---ETHAPLGSPPPAGPRKGGSG 117
+ R R++ +++ + AP PPP P GSG
Sbjct: 777 DRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSG 818
>gi|157671951 solute carrier family 4, anion exchanger, member 3
isoform 1 [Homo sapiens]
Length = 1232
Score = 37.0 bits (84), Expect = 0.003
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 30 LPPTLRLRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQNGGG-GKR 88
LPP +LR L P A R RR+R++ + P G+ P ++E+ G G +
Sbjct: 89 LPPPHKLRR--LPPTSA-----RHTRRKRKKEKTSAPPSEGTPP----IQEEGGAGVDEE 137
Query: 89 RREQGAERCETHAPLGSPPPAG-PRK 113
E+ E E+ A PPP+G P+K
Sbjct: 138 EEEEEEEEGESEAEPVEPPPSGTPQK 163
>gi|157671953 solute carrier family 4, anion exchanger, member 3
isoform 2 [Homo sapiens]
Length = 1259
Score = 37.0 bits (84), Expect = 0.003
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 30 LPPTLRLRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQNGGG-GKR 88
LPP +LR L P A R RR+R++ + P G+ P ++E+ G G +
Sbjct: 89 LPPPHKLRR--LPPTSA-----RHTRRKRKKEKTSAPPSEGTPP----IQEEGGAGVDEE 137
Query: 89 RREQGAERCETHAPLGSPPPAG-PRK 113
E+ E E+ A PPP+G P+K
Sbjct: 138 EEEEEEEEGESEAEPVEPPPSGTPQK 163
>gi|169203012 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 339
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 24/79 (30%)
Query: 63 PFCQPGNGSAPTV-------PSVREQNGGGGK-------------RRREQGAERCETHAP 102
P C P +G AP V PS+ GGGGK RR G + + P
Sbjct: 34 PACSPQSGPAPHVLEKEEEGPSLNVGGGGGGKPSRSLQEPNFSAARRGGGGEDEEKAQQP 93
Query: 103 ----LGSPPPAGPRKGGSG 117
LGS PP PR+GG G
Sbjct: 94 TALILGSLPPRLPRRGGRG 112
>gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 578
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 24/79 (30%)
Query: 63 PFCQPGNGSAPTV-------PSVREQNGGGGK-------------RRREQGAERCETHAP 102
P C P +G AP V PS+ GGGGK RR G + + P
Sbjct: 34 PACSPQSGPAPHVLEKEEEGPSLNVGGGGGGKPSRSLQEPNFSAARRGGGGEDEEKAQQP 93
Query: 103 ----LGSPPPAGPRKGGSG 117
LGS PP PR+GG G
Sbjct: 94 TALILGSLPPRLPRRGGRG 112
>gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 578
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 24/79 (30%)
Query: 63 PFCQPGNGSAPTV-------PSVREQNGGGGK-------------RRREQGAERCETHAP 102
P C P +G AP V PS+ GGGGK RR G + + P
Sbjct: 34 PACSPQSGPAPHVLEKEEEGPSLNVGGGGGGKPSRSLQEPNFSAARRGGGGEDEEKAQQP 93
Query: 103 ----LGSPPPAGPRKGGSG 117
LGS PP PR+GG G
Sbjct: 94 TALILGSLPPRLPRRGGRG 112
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 35.8 bits (81), Expect = 0.007
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 5 LVVLGRERSGKEGLCIRGTALGANPLPPTLRL-RPVLLAPRQALSRRRRRRRRRRRRHRP 63
L G + + G RG+ A P PP L R L Q L R R R RR+H
Sbjct: 973 LAAPGEDAEPQAGPSARGSPSPAAPGPPAGPLPRMDLPLAGQPLRHPTRARPRPRRQHHH 1032
Query: 64 FCQPGNGSAPTVPSVREQNGGGGKRRREQGAE 95
PG P VP Q G G R ++G E
Sbjct: 1033 RPPPGG---PQVPPALPQEGNGLSARVDEGVE 1061
>gi|239750710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 317
Score = 35.4 bits (80), Expect = 0.010
Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 38 PVLLAPRQALSRRRRRRR-------RRRRRHRPFCQPGNGS-APTVPSVREQNGGGGKRR 89
P +L P+ + S+R RRR R R R C G+GS T V + GG G +R
Sbjct: 131 PEVLWPKASRSKRTRRRASVAVISGRPGSRSRERCGRGSGSWRRTGLLVADAKGGAGAQR 190
Query: 90 REQ----GAERCETHAPLGS--PPPAGPRKGG 115
E G + A G PPPA P GG
Sbjct: 191 GESQGCTGLRAALSTAAAGELPPPPAAPDHGG 222
>gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo
sapiens]
Length = 317
Score = 35.4 bits (80), Expect = 0.010
Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 38 PVLLAPRQALSRRRRRRR-------RRRRRHRPFCQPGNGS-APTVPSVREQNGGGGKRR 89
P +L P+ + S+R RRR R R R C G+GS T V + GG G +R
Sbjct: 131 PEVLWPKASRSKRTRRRASVAVISGRPGSRSRERCGRGSGSWRRTGLLVADAKGGAGAQR 190
Query: 90 REQ----GAERCETHAPLGS--PPPAGPRKGG 115
E G + A G PPPA P GG
Sbjct: 191 GESQGCTGLRAALSTAAAGELPPPPAAPDHGG 222
>gi|145699105 connexin40.1 [Homo sapiens]
Length = 370
Score = 35.4 bits (80), Expect = 0.010
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 18/68 (26%)
Query: 54 RRRRRRRHRPFCQPGNGSAPTVPSVREQNGGG----GKRRREQGAERCETHAPLGSPPPA 109
RRR RRR PG ++ PS+R+Q+G G+R E+G E G+P P
Sbjct: 221 RRRMRRR------PGPPTS---PSIRKQSGASGHAEGRRTDEEGGREEE-----GAPAPP 266
Query: 110 GPRKGGSG 117
G R GG G
Sbjct: 267 GARAGGEG 274
>gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]
Length = 758
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 31 PPTLRLRPVLLAPRQALSRRRRRRRRRRRR----HRPFCQPGNGSAPTVPSVREQNGGGG 86
P + RL P + A RRR RR+RR RR RP G+G+A + R+ G
Sbjct: 35 PMSARLGPTRGSQGSAPGRRRGRRQRRHRRGLRARRPQRHGGSGTAAHAGAARQVASGFM 94
Query: 87 KRRREQGAERCETHAPLGSPPPAGPRKGGSG 117
RR + AP G P +G R+ G G
Sbjct: 95 PHRRRRRT------AP-GQPWASGFRRQGRG 118
>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
sapiens]
Length = 167
Score = 33.9 bits (76), Expect = 0.028
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 12 RSGKEGLCIRGTALGANPLPPTLR-LRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNG 70
R + G C RG L P R LR L R+ R R R R RR R R + G G
Sbjct: 83 RQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGG 142
Query: 71 SAPTVPSVREQNGGGGKRRREQGAER 96
GGGG R R++ R
Sbjct: 143 GG---------GGGGGGRERDRRRSR 159
>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
sapiens]
Length = 240
Score = 33.9 bits (76), Expect = 0.028
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 12 RSGKEGLCIRGTALGANPLPPTLR-LRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNG 70
R + G C RG L P R LR L R+ R R R R RR R R + G G
Sbjct: 156 RQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGG 215
Query: 71 SAPTVPSVREQNGGGGKRRREQGAER 96
GGGG R R++ R
Sbjct: 216 GG---------GGGGGGRERDRRRSR 232
>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
sapiens]
Length = 240
Score = 33.9 bits (76), Expect = 0.028
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 12 RSGKEGLCIRGTALGANPLPPTLR-LRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNG 70
R + G C RG L P R LR L R+ R R R R RR R R + G G
Sbjct: 156 RQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGG 215
Query: 71 SAPTVPSVREQNGGGGKRRREQGAER 96
GGGG R R++ R
Sbjct: 216 GG---------GGGGGGRERDRRRSR 232
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 33.9 bits (76), Expect = 0.028
Identities = 32/104 (30%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
Query: 22 GTALGANPLPPTLRLRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQ 81
G A+ P PP P PR A +R RRR R + P PG AP P V +
Sbjct: 61 GPAMETLPEPPP----PESAVPR-ARTREAEPRRRARSKSAPRAPPGLTPAPASPPVLPR 115
Query: 82 NGGGGKR--------RREQGAERCETHAPLGSPPPAGPRKGGSG 117
G +R RRE A P P++GG G
Sbjct: 116 RGREAQRAARAEASPRREPAYPALRALANELHPIKLQPQRGGPG 159
>gi|239752841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 99
Score = 33.5 bits (75), Expect = 0.037
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 36 LRPVLLAPRQALSRRRRRRRRRRRRHRP-FCQPGNGSAPTVPSVREQNGG--------GG 86
+R +++A R + R RRRRR++ R Q G G P RE G
Sbjct: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
Query: 87 KRRREQGAERCETHAPL----GSPPPA 109
+RRR G RC L G+P PA
Sbjct: 61 RRRRRGGRGRCSGALSLAVCPGAPEPA 87
>gi|239747371 PREDICTED: hypothetical protein XP_002346571 [Homo
sapiens]
Length = 99
Score = 33.5 bits (75), Expect = 0.037
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 36 LRPVLLAPRQALSRRRRRRRRRRRRHRP-FCQPGNGSAPTVPSVREQNGG--------GG 86
+R +++A R + R RRRRR++ R Q G G P RE G
Sbjct: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
Query: 87 KRRREQGAERCETHAPL----GSPPPA 109
+RRR G RC L G+P PA
Sbjct: 61 RRRRRGGRGRCSGALSLAVCPGAPEPA 87
>gi|239741196 PREDICTED: hypothetical protein XP_002342133 [Homo
sapiens]
Length = 99
Score = 33.5 bits (75), Expect = 0.037
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 36 LRPVLLAPRQALSRRRRRRRRRRRRHRP-FCQPGNGSAPTVPSVREQNGG--------GG 86
+R +++A R + R RRRRR++ R Q G G P RE G
Sbjct: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
Query: 87 KRRREQGAERCETHAPL----GSPPPA 109
+RRR G RC L G+P PA
Sbjct: 61 RRRRRGGRGRCSGALSLAVCPGAPEPA 87
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 33.1 bits (74), Expect = 0.048
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 40 LLAPRQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQNGGGGKRRREQGAERCET 99
LLA + A R R+++R+++R RP VP +R + G R E G
Sbjct: 49 LLAAQAA--HRPRQQQRQQQRPRPRSPDPAARGQHVPELRSRKPGPAARTEEGGDVTGRP 106
Query: 100 HAPLGSPPPAGPRKGGSG 117
P PPP P G G
Sbjct: 107 WQPPLLPPPGVPTPGNRG 124
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 76 PSVREQNGGGGKRRREQGAERCETHAPLGSPPPAGPRKGG 115
P V GG+RR E+ A AP GSP A R G
Sbjct: 115 PGVPTPGNRGGERRGERRAPPRPAGAPRGSPMAARGRARG 154
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 33.1 bits (74), Expect = 0.048
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 40/136 (29%)
Query: 20 IRGTALGANPLPPTLRLRPVLLAPRQALSR------------RRRRRRRRRR-------- 59
+R A A P PP +PR A S RRRRRRRRRR
Sbjct: 345 VRDKAAAAAPTPPARGKESP--SPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASA 402
Query: 60 -----RHRPFCQPGNGSAPTVPSVREQNGGGGKRRR-----EQGAE--------RCETHA 101
R RP P GS+ ++ R + G R E G+E R +
Sbjct: 403 PRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERP 462
Query: 102 PLGSPPPAGPRKGGSG 117
P P P G G
Sbjct: 463 PRARPASTSPSPGAHG 478
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 38 PVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQNGGGGKRRREQGAERC 97
P L+P+ R+ +R P P GS P ++NGG G+R G
Sbjct: 275 PSRLSPKHRDEGRKTGSQRSSGSRSP--SPSGGSGWGSP---QRNGGSGQRSGAHGGRPG 329
Query: 98 ETHAPLGSPPPAGPR 112
H+P P PR
Sbjct: 330 SAHSPPDKPSSPSPR 344
>gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo
sapiens]
Length = 176
Score = 32.7 bits (73), Expect = 0.063
Identities = 36/120 (30%), Positives = 45/120 (37%), Gaps = 27/120 (22%)
Query: 20 IRGTALGANPLPPTLRLRPVLLAPRQALSRRRRRRRRRRRRHR---------PF--CQPG 68
+ AL A P L P P Q S + RRRRR R P+ +PG
Sbjct: 46 VDAAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPG 105
Query: 69 NGS--------APTVPSVREQNGG----GGKRRR----EQGAERCETHAPLGSPPPAGPR 112
G +P +VR Q G G R+ +GA+ APL SP P G R
Sbjct: 106 GGGPCQGSARFSPDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVR 165
>gi|224028248 non-POU domain containing, octamer-binding isoform 2
[Homo sapiens]
Length = 382
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 44 RQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQN-------GGGGKRRREQGAER 96
RQ RRRR RR++ + G T P REQ GG +GA
Sbjct: 254 RQEEERRRREEEMRRQQEEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGA-M 312
Query: 97 CETHAPLGSPPPAGP 111
P G+P P GP
Sbjct: 313 PPAPVPAGTPAPPGP 327
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 44 RQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQN-------GGGGKRRREQGAER 96
RQ RRRR RR++ + G T P REQ GG +GA
Sbjct: 343 RQEEERRRREEEMRRQQEEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGA-M 401
Query: 97 CETHAPLGSPPPAGP 111
P G+P P GP
Sbjct: 402 PPAPVPAGTPAPPGP 416
>gi|224028244 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 44 RQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQN-------GGGGKRRREQGAER 96
RQ RRRR RR++ + G T P REQ GG +GA
Sbjct: 343 RQEEERRRREEEMRRQQEEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGA-M 401
Query: 97 CETHAPLGSPPPAGP 111
P G+P P GP
Sbjct: 402 PPAPVPAGTPAPPGP 416
>gi|34932414 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 44 RQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQN-------GGGGKRRREQGAER 96
RQ RRRR RR++ + G T P REQ GG +GA
Sbjct: 343 RQEEERRRREEEMRRQQEEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGA-M 401
Query: 97 CETHAPLGSPPPAGP 111
P G+P P GP
Sbjct: 402 PPAPVPAGTPAPPGP 416
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 32.3 bits (72), Expect = 0.082
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 51 RRRRRRRRRRHRPFCQPGNGSAPTVPSVREQNGGGGKRRREQGAER-CETHAPLGSPPPA 109
RRRRR RRRR +PG+ AP GKRR+ G + E++ P A
Sbjct: 65 RRRRRPRRRRRVNDAEPGSPEAPQ-----------GKRRKADGEDAGAESNEEAPGEPSA 113
Query: 110 GPRKGGSG 117
G + G
Sbjct: 114 GSSEEAPG 121
>gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 32.0 bits (71), Expect = 0.11
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 27 ANPLPPTLRLRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQNGGGG 86
++P PP + P L R RRR R R G PTV R G G
Sbjct: 37 SDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRL-------ALGKRPTV-GARRSPGAGP 88
Query: 87 KRRREQGAERCETHAPLGSPPPAGPR 112
RR ++ ERC + +GPR
Sbjct: 89 GRRMDENHERCGPGVEFVAVVASGPR 114
>gi|239756914 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 32.0 bits (71), Expect = 0.11
Identities = 32/131 (24%), Positives = 43/131 (32%), Gaps = 32/131 (24%)
Query: 13 SGKEGLCIRGTALGANPLPPTLRLRPVLLAPRQALSRRRRRRRRRRRR------------ 60
+GK+GL + TAL + LS +RR+ ++RRRR
Sbjct: 39 AGKQGLLLAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCS 98
Query: 61 --HRPFCQPGNGSAPTVPSVREQNGGGGKRRREQG-------------AERCETHAP--- 102
H P C + P V +Q QG +R E H
Sbjct: 99 CTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASLGAGAISLRQRLEVHGEGLL 158
Query: 103 --LGSPPPAGP 111
LG P P GP
Sbjct: 159 FRLGRPLPVGP 169
>gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 32.0 bits (71), Expect = 0.11
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 27 ANPLPPTLRLRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGNGSAPTVPSVREQNGGGG 86
++P PP + P L R RRR R R G PTV R G G
Sbjct: 37 SDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRL-------ALGKRPTV-GARRSPGAGP 88
Query: 87 KRRREQGAERCETHAPLGSPPPAGPR 112
RR ++ ERC + +GPR
Sbjct: 89 GRRMDENHERCGPGVEFVAVVASGPR 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,430,861
Number of Sequences: 37866
Number of extensions: 366526
Number of successful extensions: 3008
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 2460
Number of HSP's gapped (non-prelim): 645
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.