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Search of human proteins with 239745490
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745490 PREDICTED: hypothetical protein XP_002343505 [Homo
sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756537 PREDICTED: hypothetical protein [Homo sapiens] 268 9e-73
gi|239745490 PREDICTED: hypothetical protein XP_002343505 [Homo ... 268 9e-73
gi|50345997 E1A binding protein p300 [Homo sapiens] 31 0.32
gi|119395729 cathepsin A isoform a precursor [Homo sapiens] 30 0.41
gi|59823631 G protein-coupled receptor 125 [Homo sapiens] 29 0.92
gi|212720889 bestrophin 1 isoform 2 [Homo sapiens] 29 1.2
gi|239755827 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239750328 PREDICTED: hypothetical protein XP_002347384 [Homo ... 28 1.6
gi|239744634 PREDICTED: hypothetical protein XP_002343228 [Homo ... 28 1.6
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens] 28 1.6
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens] 28 1.6
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens] 28 1.6
gi|117606357 anterior pharynx defective 1 homolog A isoform 2 [H... 28 2.1
gi|11321593 insulin-like growth factor binding protein 6 [Homo s... 27 3.5
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 27 3.5
gi|239755473 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo ... 27 4.6
gi|239744278 PREDICTED: hypothetical protein XP_002343110 [Homo ... 27 4.6
gi|34577055 F-box only protein 30 [Homo sapiens] 27 4.6
gi|4505737 complement factor properdin precursor [Homo sapiens] 27 6.0
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 27 6.0
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 27 6.0
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 27 6.0
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 27 6.0
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 27 6.0
gi|36951034 G protein-coupled receptor 78 [Homo sapiens] 27 6.0
gi|223671861 complement factor properdin precursor [Homo sapiens] 27 6.0
gi|116235482 glycosyltransferase-like 1B [Homo sapiens] 27 6.0
gi|38788260 bromodomain PHD finger transcription factor isoform ... 26 7.8
gi|38788274 bromodomain PHD finger transcription factor isoform ... 26 7.8
>gi|239756537 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 268 bits (685), Expect = 9e-73
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS 60
MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS
Sbjct: 1 MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS 60
Query: 61 LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC 120
LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC
Sbjct: 61 LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC 120
Query: 121 QLSPKPAELT 130
QLSPKPAELT
Sbjct: 121 QLSPKPAELT 130
>gi|239745490 PREDICTED: hypothetical protein XP_002343505 [Homo
sapiens]
Length = 130
Score = 268 bits (685), Expect = 9e-73
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS 60
MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS
Sbjct: 1 MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS 60
Query: 61 LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC 120
LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC
Sbjct: 61 LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC 120
Query: 121 QLSPKPAELT 130
QLSPKPAELT
Sbjct: 121 QLSPKPAELT 130
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 30.8 bits (68), Expect = 0.32
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 2 GHPQSSTFFQ---IPGQQGSHPNPNLFHL--LLQGVQGVG-PGQQLLQAAQLPL 49
G PQ Q +PGQQG H NP + ++ + GVQ G P QQ Q Q P+
Sbjct: 2105 GMPQGQPGLQPPTMPGQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPM 2158
>gi|119395729 cathepsin A isoform a precursor [Homo sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 0.41
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 31 GVQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQDGLQRGHLLLAL 90
G QG G G ++++AA PL LL +LLL LL+ G A D QD +QR L
Sbjct: 10 GEQGRG-GAEMIRAAPPPLFLLLLLLL---LLVSWASRGEAAPD---QDEIQRLPGLAKQ 62
Query: 91 PLHRSHS 97
P R +S
Sbjct: 63 PSFRQYS 69
>gi|59823631 G protein-coupled receptor 125 [Homo sapiens]
Length = 1321
Score = 29.3 bits (64), Expect = 0.92
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 45 AQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQ-DGLQRG 84
AQ PLLL LL LL+LL GG G A C+ DG RG
Sbjct: 11 AQPPLLLPLSLLALLALLGGGGGGGAAALPAGCKHDGRPRG 51
>gi|212720889 bestrophin 1 isoform 2 [Homo sapiens]
Length = 604
Score = 28.9 bits (63), Expect = 1.2
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 81 LQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGACQLSP 124
L +GH + P S +L L L H+ GFH CQ L P
Sbjct: 525 LNQGHCIALCPTPASLALSLPFL----HNFLGFHHCQSTLDLRP 564
>gi|239755827 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 32 VQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQ--DGLQR---GHL 86
+ G+ L+ QL L + LLL L Q G +G C+ DG Q+ GH+
Sbjct: 62 LHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGHM 121
Query: 87 LLALPLHRSHSLGL 100
+ L LH H L
Sbjct: 122 SMPLLLHDRHCSSL 135
>gi|239750328 PREDICTED: hypothetical protein XP_002347384 [Homo
sapiens]
Length = 146
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 32 VQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQ--DGLQR---GHL 86
+ G+ L+ QL L + LLL L Q G +G C+ DG Q+ GH+
Sbjct: 62 LHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGHM 121
Query: 87 LLALPLHRSHSLGL 100
+ L LH H L
Sbjct: 122 SMPLLLHDRHCSSL 135
>gi|239744634 PREDICTED: hypothetical protein XP_002343228 [Homo
sapiens]
Length = 146
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 32 VQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQ--DGLQR---GHL 86
+ G+ L+ QL L + LLL L Q G +G C+ DG Q+ GH+
Sbjct: 62 LHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGHM 121
Query: 87 LLALPLHRSHSLGL 100
+ L LH H L
Sbjct: 122 SMPLLLHDRHCSSL 135
>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
Length = 843
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 1 MGHPQSSTFFQIPGQQGSHPNP--NLFHLLLQGVQGVGPG 38
M HP+ F+QI ++ HPNP F L +G V PG
Sbjct: 126 MMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAH-VKPG 164
>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
Length = 686
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 1 MGHPQSSTFFQIPGQQGSHPNP--NLFHLLLQGVQGVGPG 38
M HP+ F+QI ++ HPNP F L +G V PG
Sbjct: 126 MMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAH-VKPG 164
>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
Length = 585
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 1 MGHPQSSTFFQIPGQQGSHPNP--NLFHLLLQGVQGVGPG 38
M HP+ F+QI ++ HPNP F L +G V PG
Sbjct: 126 MMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAH-VKPG 164
>gi|117606357 anterior pharynx defective 1 homolog A isoform 2 [Homo
sapiens]
Length = 247
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 26 HLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQD 79
HLL G+ + P + A+ LP+ +TV + L + + GG L I +C+D
Sbjct: 197 HLLTSGLTFLNPWYE---ASLLPIYAVTVSMGLWAFITAGGSLRSIQRSLLCKD 247
>gi|11321593 insulin-like growth factor binding protein 6 [Homo
sapiens]
Length = 240
Score = 27.3 bits (59), Expect = 3.5
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 48 PLLLLTVLLLLLSLLLQGGDLGFIAADGVCQDGLQRG 84
P LL LLLLL+LLL G +A C G+Q G
Sbjct: 3 PHRLLPPLLLLLALLLAASPGGALARCPGCGQGVQAG 39
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 27.3 bits (59), Expect = 3.5
Identities = 32/78 (41%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 24 LFHLLLQGVQ-GVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQDGLQ 82
L H LL G+ VG LL PLLLL +LL LL+ GG + A V GL
Sbjct: 947 LSHGLLAGLSFAVGSSSGLL-----PLLLL-LLLPLLAAQGGGGLQAALLALEVGLVGLG 1000
Query: 83 RGHLLLALPLHRSHSLGL 100
+LLL LH SL L
Sbjct: 1001 ASYLLLCTALHLPSSLFL 1018
>gi|239755473 PREDICTED: hypothetical protein [Homo sapiens]
Length = 387
Score = 26.9 bits (58), Expect = 4.6
Identities = 16/49 (32%), Positives = 17/49 (34%)
Query: 64 QGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHG 112
Q AA G CQ L L LP H L H H +HG
Sbjct: 319 QSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHG 367
>gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo
sapiens]
Length = 387
Score = 26.9 bits (58), Expect = 4.6
Identities = 16/49 (32%), Positives = 17/49 (34%)
Query: 64 QGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHG 112
Q AA G CQ L L LP H L H H +HG
Sbjct: 319 QSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHG 367
>gi|239744278 PREDICTED: hypothetical protein XP_002343110 [Homo
sapiens]
Length = 387
Score = 26.9 bits (58), Expect = 4.6
Identities = 16/49 (32%), Positives = 17/49 (34%)
Query: 64 QGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHG 112
Q AA G CQ L L LP H L H H +HG
Sbjct: 319 QSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHG 367
>gi|34577055 F-box only protein 30 [Homo sapiens]
Length = 745
Score = 26.9 bits (58), Expect = 4.6
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 90 LPLHRSH--SLGLRALAHLCHSLHGFHFCQGAC 120
L LH H SL L H+ L GF CQ +C
Sbjct: 606 LGLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSC 638
>gi|4505737 complement factor properdin precursor [Homo sapiens]
Length = 469
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 41 LLQAAQLPLLLLTVLLLLLSLLLQGGD 67
+ + AQ P LLL LLLLL+L G D
Sbjct: 2 ITEGAQAPRLLLPPLLLLLTLPATGSD 28
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 94 RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
RS + +RAL H L F FC G+C+ + P +L+
Sbjct: 143 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 181
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 94 RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
RS + +RAL H L F FC G+C+ + P +L+
Sbjct: 126 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 164
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 94 RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
RS + +RAL H L F FC G+C+ + P +L+
Sbjct: 134 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 172
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 94 RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
RS + +RAL H L F FC G+C+ + P +L+
Sbjct: 126 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 164
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 94 RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
RS + +RAL H L F FC G+C+ + P +L+
Sbjct: 134 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 172
>gi|36951034 G protein-coupled receptor 78 [Homo sapiens]
Length = 363
Score = 26.6 bits (57), Expect = 6.0
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 35 VGPGQQLLQAAQLPLLLLTVLLLLLSLLL----QGGDLGFIAADGVCQDGLQRGHLLLA 89
+GPG+ LL A L +++L V LL +L+L +L A GV L GHLLLA
Sbjct: 1 MGPGEALL--AGLLVMVLAVALLSNALVLLCCAYSAELR-TRASGVLLVNLSLGHLLLA 56
>gi|223671861 complement factor properdin precursor [Homo sapiens]
Length = 469
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 41 LLQAAQLPLLLLTVLLLLLSLLLQGGD 67
+ + AQ P LLL LLLLL+L G D
Sbjct: 2 ITEGAQAPRLLLPPLLLLLTLPATGSD 28
>gi|116235482 glycosyltransferase-like 1B [Homo sapiens]
Length = 721
Score = 26.6 bits (57), Expect = 6.0
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 52 LTVLLLLLSLLLQGGDLG 69
L +LLLLL LL GGDLG
Sbjct: 15 LLLLLLLLGFLLFGGDLG 32
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 26.2 bits (56), Expect = 7.8
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 16 QGSHPNPNLFHLLLQGVQGV-GPGQQLLQAA 45
QG L+ QGV + GPGQQL+QAA
Sbjct: 2296 QGQGQTTGQLQLIPQGVTVLPGPGQQLMQAA 2326
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 26.2 bits (56), Expect = 7.8
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 16 QGSHPNPNLFHLLLQGVQGV-GPGQQLLQAA 45
QG L+ QGV + GPGQQL+QAA
Sbjct: 2170 QGQGQTTGQLQLIPQGVTVLPGPGQQLMQAA 2200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.144 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,889,585
Number of Sequences: 37866
Number of extensions: 262786
Number of successful extensions: 862
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 31
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.