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Search of human proteins with 239745136
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745136 PREDICTED: hypothetical protein XP_002343400 [Homo
sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756257 PREDICTED: similar to hCG1982161 [Homo sapiens] 212 6e-56
gi|239750794 PREDICTED: hypothetical protein XP_002347561 [Homo ... 212 6e-56
gi|239745136 PREDICTED: hypothetical protein XP_002343400 [Homo ... 212 6e-56
gi|18702331 OTU domain containing 7A [Homo sapiens] 103 3e-23
gi|118026942 zinc finger protein Cezanne [Homo sapiens] 57 2e-09
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 30 0.54
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 30 0.54
gi|197276670 spermatogenesis and centriole associated 1 isoform ... 29 0.70
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 29 0.70
gi|237649113 Rho-related BTB domain containing 2 isoform 3 [Homo... 29 0.91
gi|237649111 Rho-related BTB domain containing 2 isoform 2 [Homo... 29 0.91
gi|237649109 Rho-related BTB domain containing 2 isoform 1 [Homo... 29 0.91
gi|24430137 L antigen family, member 3 [Homo sapiens] 29 0.91
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 27 2.7
gi|169209613 PREDICTED: hypothetical protein LOC100128785 [Homo ... 26 5.9
gi|169210642 PREDICTED: hypothetical protein LOC100128785 [Homo ... 26 5.9
gi|169210176 PREDICTED: hypothetical protein LOC100128785 [Homo ... 26 5.9
gi|207452735 epiplakin 1 [Homo sapiens] 26 5.9
gi|115511036 alpha-kinase 3 [Homo sapiens] 26 5.9
gi|55749715 hypothetical protein LOC57536 [Homo sapiens] 26 5.9
gi|31563378 eukaryotic translation initiation factor 6 isoform a... 26 7.7
gi|4504771 eukaryotic translation initiation factor 6 isoform a ... 26 7.7
>gi|239756257 PREDICTED: similar to hCG1982161 [Homo sapiens]
Length = 101
Score = 212 bits (539), Expect = 6e-56
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPE 60
MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPE
Sbjct: 1 MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPE 60
Query: 61 PGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALGFHR 101
PGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALGFHR
Sbjct: 61 PGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALGFHR 101
>gi|239750794 PREDICTED: hypothetical protein XP_002347561 [Homo
sapiens]
Length = 101
Score = 212 bits (539), Expect = 6e-56
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPE 60
MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPE
Sbjct: 1 MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPE 60
Query: 61 PGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALGFHR 101
PGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALGFHR
Sbjct: 61 PGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALGFHR 101
>gi|239745136 PREDICTED: hypothetical protein XP_002343400 [Homo
sapiens]
Length = 101
Score = 212 bits (539), Expect = 6e-56
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPE 60
MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPE
Sbjct: 1 MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPE 60
Query: 61 PGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALGFHR 101
PGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALGFHR
Sbjct: 61 PGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALGFHR 101
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 103 bits (257), Expect = 3e-23
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 1 MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLE 50
MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLE
Sbjct: 1 MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLE 50
>gi|118026942 zinc finger protein Cezanne [Homo sapiens]
Length = 843
Score = 57.4 bits (137), Expect = 2e-09
Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 23 MTLDMDAVLSDFVRSTGAEPGLARDLLE 50
MTLDMDAVLSDFVRSTGAEPGLARDLLE
Sbjct: 1 MTLDMDAVLSDFVRSTGAEPGLARDLLE 28
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 20 HDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPT 54
+DP++ D D + SDF R +PGL R L A P+
Sbjct: 518 YDPVSEDQDPLSSDFKRLGLRKPGLPRGLWLAKPS 552
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
sapiens]
Length = 1086
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 20 HDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPT 54
+DP++ D D + SDF R +PGL R L A P+
Sbjct: 596 YDPVSEDQDPLSSDFKRLGLRKPGLPRGLWLAKPS 630
>gi|197276670 spermatogenesis and centriole associated 1 isoform 2
[Homo sapiens]
Length = 441
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 3 SSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPEPG 62
SS++ P + + L+ M ++ S + ST PG++++LL P + + LPE
Sbjct: 168 SSLVAGPVAMSQSSPLIAPVMGTVAVSLSSPLLSSTATPPGVSQNLLANPMSNLVLPEAP 227
Query: 63 RCCL-HAVQGSRLHPVGQRVAVVSAHSPHPL 92
R L ++G P V +A + PL
Sbjct: 228 RLRLAEPLRGGPTGPQSPACVVPTATTKVPL 258
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 3 SSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPEPG 62
SS++ P + + L+ M ++ S + ST PG++++LL P + + LPE
Sbjct: 168 SSLVAGPVAMSQSSPLIAPVMGTVAVSLSSPLLSSTATPPGVSQNLLANPMSNLVLPEAP 227
Query: 63 RCCL-HAVQGSRLHPVGQRVAVVSAHSPHPL 92
R L ++G P V +A + PL
Sbjct: 228 RLRLAEPLRGGPTGPQSPACVVPTATTKVPL 258
>gi|237649113 Rho-related BTB domain containing 2 isoform 3 [Homo
sapiens]
Length = 727
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 5 VLPNPTSA--ECWAALLHDPMTLDMDAVLSDFVR 36
V+P+P S+ EC A LL DP+ D+ VL + VR
Sbjct: 244 VVPDPPSSSEECPAHLLEDPLCADVILVLQERVR 277
>gi|237649111 Rho-related BTB domain containing 2 isoform 2 [Homo
sapiens]
Length = 734
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 5 VLPNPTSA--ECWAALLHDPMTLDMDAVLSDFVR 36
V+P+P S+ EC A LL DP+ D+ VL + VR
Sbjct: 251 VVPDPPSSSEECPAHLLEDPLCADVILVLQERVR 284
>gi|237649109 Rho-related BTB domain containing 2 isoform 1 [Homo
sapiens]
Length = 749
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 5 VLPNPTSA--ECWAALLHDPMTLDMDAVLSDFVR 36
V+P+P S+ EC A LL DP+ D+ VL + VR
Sbjct: 266 VVPDPPSSSEECPAHLLEDPLCADVILVLQERVR 299
>gi|24430137 L antigen family, member 3 [Homo sapiens]
Length = 143
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 51 APPTVIHLPEPGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPL 92
APP H P PGR A +GSR+ P + +S P PL
Sbjct: 37 APPA--HAPGPGRDAASAARGSRMRP---HIFTLSVPFPTPL 73
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 49 LEAPPTVIHLPEPGRCCLHAVQGSRLHPVG 78
L +PP V LP P R V+G+ L P G
Sbjct: 403 LHSPPAVPRLPSPVRSAHSHVRGAELLPAG 432
>gi|169209613 PREDICTED: hypothetical protein LOC100128785 [Homo
sapiens]
Length = 639
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 51 APPTVIHLPEPGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALG 98
A T++ P P R C + + P G A V++ P P L P G
Sbjct: 19 AVKTLVRQPSPNRPCHRDASHTTVPPPGLATARVASALPSPPLVPNQG 66
>gi|169210642 PREDICTED: hypothetical protein LOC100128785 [Homo
sapiens]
Length = 639
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 51 APPTVIHLPEPGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALG 98
A T++ P P R C + + P G A V++ P P L P G
Sbjct: 19 AVKTLVRQPSPNRPCHRDASHTTVPPPGLATARVASALPSPPLVPNQG 66
>gi|169210176 PREDICTED: hypothetical protein LOC100128785 [Homo
sapiens]
Length = 639
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 51 APPTVIHLPEPGRCCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGPALG 98
A T++ P P R C + + P G A V++ P P L P G
Sbjct: 19 AVKTLVRQPSPNRPCHRDASHTTVPPPGLATARVASALPSPPLVPNQG 66
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 64 CCLHAVQGSRLHPVGQRVAVVSAHSPHPLLGP 95
C L AV G RL P GQR+++ A LLGP
Sbjct: 927 CGLGAVGGVRLLPSGQRLSLYQA-MRQKLLGP 957
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 25 LDMDAVLSDFVRSTGAEPGLARDLLEAPPTV 55
LD + L + + T A+P A+DLL+AP +
Sbjct: 1449 LDTEVALDEGKQETLAKPRKAKDLLKAPQVI 1479
>gi|55749715 hypothetical protein LOC57536 [Homo sapiens]
Length = 577
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 19 LHDPMTLDMDAVLSDFV----RSTGAEPGLARDLLEAPPTVIHL-------PEPGRCCLH 67
LH P D+D + S+ S G +P + + + P +H+ P P +CC H
Sbjct: 252 LHHPKD-DLDKIPSETTTCNCESPGRKPAVPTEKM--PQEELHMKECPHLKPTPSQCCGH 308
Query: 68 AVQGSRLH 75
+ R+H
Sbjct: 309 RLAADRVH 316
>gi|31563378 eukaryotic translation initiation factor 6 isoform a
[Homo sapiens]
Length = 245
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 4 SVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPEPGR 63
S L N T+ + AL+H + + + +L+D ++ +A +L G
Sbjct: 102 SALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVL-----------VGS 150
Query: 64 CCLHAVQGSRLHP 76
C+ + QG +HP
Sbjct: 151 YCVFSNQGGLVHP 163
>gi|4504771 eukaryotic translation initiation factor 6 isoform a
[Homo sapiens]
Length = 245
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 4 SVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEAPPTVIHLPEPGR 63
S L N T+ + AL+H + + + +L+D ++ +A +L G
Sbjct: 102 SALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVL-----------VGS 150
Query: 64 CCLHAVQGSRLHP 76
C+ + QG +HP
Sbjct: 151 YCVFSNQGGLVHP 163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,970,847
Number of Sequences: 37866
Number of extensions: 243406
Number of successful extensions: 531
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 23
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.