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Search of human proteins with 239744643
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744643 PREDICTED: hypothetical protein LOC440104 [Homo
sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755836 PREDICTED: hypothetical protein LOC440104 isoform 1... 212 4e-56
gi|239750337 PREDICTED: similar to RIKEN cDNA 1110012D08 [Homo s... 212 4e-56
gi|239744643 PREDICTED: hypothetical protein LOC440104 [Homo sap... 212 4e-56
gi|52353302 transmembrane protein 198 [Homo sapiens] 110 2e-25
gi|19923957 major facilitator superfamily domain containing 3 [H... 30 0.31
gi|225703102 major facilitator superfamily domain containing 10 ... 30 0.41
gi|225703104 major facilitator superfamily domain containing 10 ... 30 0.41
gi|27777671 keratinocyte associated protein 3 [Homo sapiens] 30 0.41
gi|105554437 forkhead box B1 [Homo sapiens] 28 1.5
gi|52546689 olfactory receptor, family 51, subfamily G, member 2... 28 1.5
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 28 2.0
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens] 27 2.6
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ... 27 2.6
gi|112421108 capicua homolog [Homo sapiens] 27 2.6
gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens] 27 3.4
gi|5453613 CD7 antigen precursor [Homo sapiens] 27 4.5
gi|13540477 wingless-type MMTV integration site family, member 3... 27 4.5
gi|33469929 EGF-like, fibronectin type III and laminin G domains... 27 4.5
gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens] 26 5.9
gi|38194224 G protein-coupled receptor 25 [Homo sapiens] 26 5.9
gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fa... 26 7.7
gi|4885333 free fatty acid receptor 2 [Homo sapiens] 26 7.7
gi|24415404 MDN1, midasin homolog [Homo sapiens] 26 7.7
>gi|239755836 PREDICTED: hypothetical protein LOC440104 isoform 1
[Homo sapiens]
Length = 105
Score = 212 bits (540), Expect = 4e-56
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP
Sbjct: 1 MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
Query: 61 FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC
Sbjct: 61 FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
>gi|239750337 PREDICTED: similar to RIKEN cDNA 1110012D08 [Homo
sapiens]
Length = 105
Score = 212 bits (540), Expect = 4e-56
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP
Sbjct: 1 MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
Query: 61 FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC
Sbjct: 61 FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
>gi|239744643 PREDICTED: hypothetical protein LOC440104 [Homo
sapiens]
Length = 105
Score = 212 bits (540), Expect = 4e-56
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP
Sbjct: 1 MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
Query: 61 FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC
Sbjct: 61 FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
>gi|52353302 transmembrane protein 198 [Homo sapiens]
Length = 360
Score = 110 bits (276), Expect = 2e-25
Identities = 59/105 (56%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 1 MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
MLV VGL L GLLLGL L A ALL S P YQP S W P G L+G LL ALLTLRWPRP
Sbjct: 111 MLVRSVGLFLVGLLLGLLLAAAALLGSAPYYQPGSVWGPLGLLLGGGLLCALLTLRWPRP 170
Query: 61 FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
T L T + G+A++ DYF E L LG ++ +RL+ P +P LC
Sbjct: 171 LTTLATAVTGAALIATAADYFAELLLLGRYVVERLRAAP-VPPLC 214
>gi|19923957 major facilitator superfamily domain containing 3 [Homo
sapiens]
Length = 412
Score = 30.4 bits (67), Expect = 0.31
Identities = 32/108 (29%), Positives = 40/108 (37%), Gaps = 29/108 (26%)
Query: 10 LTGLLLGLTLGAG---------ALLASEPIYQPPS------AWVPAGGLVGLALLGALLT 54
+ GLLL L LGA A+ EP P A+ L G ALL L T
Sbjct: 101 VAGLLLLLNLGAAMQDVALDALAVQLLEPAELGPGNTVQVVAYKLGAALAGGALLALLPT 160
Query: 55 LRWPRPFTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALP 102
WP+ F +L T +A L +W L+ LP P
Sbjct: 161 FSWPQLFLLLAATYWLAAAL--------------AWAAPALRRLPQQP 194
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 65 GTTLLGSAVLVACVDYFLEGL 85
GT L GSA+L C+ +FL GL
Sbjct: 314 GTILRGSALLSLCLQHFLGGL 334
>gi|225703102 major facilitator superfamily domain containing 10
[Homo sapiens]
Length = 455
Score = 30.0 bits (66), Expect = 0.41
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 14 LLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLL---- 69
L+GLT+ + I+ P V A L L+ A L + W R VLG LL
Sbjct: 314 LIGLTMATIQGAYARRIH--PGGEVAAVKRALLLLVPAFLLIGWGRSLPVLGLGLLLYSF 371
Query: 70 GSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSL 104
+AV+V C+ + G G + TL +L +L
Sbjct: 372 AAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGAL 406
>gi|225703104 major facilitator superfamily domain containing 10
[Homo sapiens]
Length = 455
Score = 30.0 bits (66), Expect = 0.41
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 14 LLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLL---- 69
L+GLT+ + I+ P V A L L+ A L + W R VLG LL
Sbjct: 314 LIGLTMATIQGAYARRIH--PGGEVAAVKRALLLLVPAFLLIGWGRSLPVLGLGLLLYSF 371
Query: 70 GSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSL 104
+AV+V C+ + G G + TL +L +L
Sbjct: 372 AAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGAL 406
>gi|27777671 keratinocyte associated protein 3 [Homo sapiens]
Length = 240
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 14 LLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTL 55
LL +++G LLAS + +PP WV L+ LAL+ LL++
Sbjct: 70 LLSVSVGLVTLLASRNLLRPPLHWV----LLALALVNLLLSV 107
>gi|105554437 forkhead box B1 [Homo sapiens]
Length = 325
Score = 28.1 bits (61), Expect = 1.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 46 LALLGALLTLRWPRPFTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALP 102
L +G+ L WP + G + + +A DY G+ L QTLPA+P
Sbjct: 204 LTTMGSSLGTGWPHVYGSAGMIDSATPISMASGDYSAYGVPLKPLCHAAGQTLPAIP 260
>gi|52546689 olfactory receptor, family 51, subfamily G, member 2
[Homo sapiens]
Length = 314
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 3 VHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFT 62
+HC L + +LL + + P++ G +GL LG + L +P PF
Sbjct: 109 IHCFSFLESSVLLSMAFDRFVAIC-HPLHYVSILTNTVIGRIGLVSLGRSVALIFPLPFM 167
Query: 63 VLGTTLLGSAVL 74
+ GS VL
Sbjct: 168 LKRFPYCGSPVL 179
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 27 SEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLLG 70
S+P+Y PP P+ L GLAL G L F+ + T LG
Sbjct: 1876 SQPLYLPPGPAPPSALLSGLALKGQFL------DFSTMQATELG 1913
>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
Length = 462
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 22 GALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLLGSAVLVA 76
G AS + PP AG + GLA + L + FTV+G L+ AVL +
Sbjct: 30 GVANASGASWGPPRGQYSAGAVAGLAAVVGFLIV-----FTVVGNVLVVIAVLTS 79
>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
sapiens]
Length = 1386
Score = 27.3 bits (59), Expect = 2.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 16 GLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPR 59
GL +GAG + + + P+ +G G LLG L W R
Sbjct: 873 GLEVGAGLAVRLARVLREPAFLAGSGAACGALLLGLCAALYWRR 916
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 27.3 bits (59), Expect = 2.6
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 10 LTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLL 69
+T LL+G T G GA + P Q + P GG + GA P P +L L
Sbjct: 760 VTNLLVG-TPGYGA--PAPPAVQFIAQGAPGGGTTAGSGAGAGSGPNGPVPLGILQPGAL 816
Query: 70 GSAVLVACVDYFLEGLALGSWLGQRLQTLPA 100
G A + V Y L L Q+LQ PA
Sbjct: 817 GKAGGITQVQYILPTLP------QQLQVAPA 841
>gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens]
Length = 668
Score = 26.9 bits (58), Expect = 3.4
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 6 VGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLG 65
V +LL L++ ++ A ++ +E I + +W AG LA G + + W RPFT++
Sbjct: 40 VQVLLGILVVTFSMVASSVTTTESIKRSCPSW--AG--FSLAFSGVVGIVSWKRPFTLVI 95
Query: 66 TTLLGSAVLVACVDYFLEGLAL 87
+ S + V CV + G L
Sbjct: 96 SFF--SLLSVLCVMLSMAGSVL 115
>gi|5453613 CD7 antigen precursor [Homo sapiens]
Length = 240
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 8 LLLTGLLLGLTLG-AGALLASEPIYQPPSAWVPAGGLVGL------ALLGALLTLRWPRP 60
LLL LLL L G GAL A E P VP G V + L G L P+P
Sbjct: 7 LLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYLRQLGPQP 66
Query: 61 FTVL 64
++
Sbjct: 67 QDII 70
>gi|13540477 wingless-type MMTV integration site family, member 3
[Homo sapiens]
Length = 355
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 10 LTGLLLGLTLGAGALLASEPIY 31
L GLLLGL LG +LA PI+
Sbjct: 5 LLGLLLGLLLGGTRVLAGYPIW 26
>gi|33469929 EGF-like, fibronectin type III and laminin G domains
isoform 1 [Homo sapiens]
Length = 1009
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 7 GLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP----FT 62
G+LL LLL +LG GA+ I +P P +G AL +++W P
Sbjct: 6 GVLLRLLLLASSLGPGAVSLRAAIRKPGKVGPPLDIKLG-ALNCTAFSIQWKMPRHPGSP 64
Query: 63 VLGTTLLGSAV 73
+LG T+ S V
Sbjct: 65 ILGYTVFYSEV 75
>gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens]
Length = 890
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 58 PRPFTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALP 102
P P +VL T + + + +C + L+GLA LQ LPA P
Sbjct: 185 PSP-SVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQALPAAP 228
>gi|38194224 G protein-coupled receptor 25 [Homo sapiens]
Length = 361
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 5 CVG-LLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTL 55
C G LLL G+ + L LL + P+ P A G+ +ALL L +L
Sbjct: 124 CAGALLLAGMSVDRYLAVVKLLEARPLRTPRCALASCCGVWAVALLAGLPSL 175
>gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fast
twitch 1 [Homo sapiens]
Length = 879
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 29 PIYQPPSAWVPAGG 42
P PP AW PAGG
Sbjct: 178 PFISPPKAWGPAGG 191
>gi|4885333 free fatty acid receptor 2 [Homo sapiens]
Length = 330
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 43 LVGLALLGALLTLRWPRPFTVLGTTLLGSAVLVACVDYFLEGLALGSWLG 92
L+ ++ A RW P V T G + C + L G+++ +LG
Sbjct: 61 LLPFKIIEAASNFRWYLPKVVCALTSFGFYSSIYCSTWLLAGISIERYLG 110
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 42 GLVGLALLGALLTLRWPRPFTVLG------TTLLGSAVLVACVDYFLEGLAL 87
GLVG ++ LL L TV+G +TL+ +A+L+ V Y GL+L
Sbjct: 2334 GLVGNSVCDILLALHTETRSTVVGSPTSSVSTLIQTAILI--VQYLQRGLSL 2383
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.145 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,384,479
Number of Sequences: 37866
Number of extensions: 196745
Number of successful extensions: 639
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 24
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.