Guide to the Human Genome
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Name: LOC100288977 Sequence: fasta or formatted (232aa) NCBI GI: 239744637
Description:

PREDICTED: hypothetical protein XP_002343209

Not currently referenced in the text

Other entries for this name:
alt mRNA {232aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         15           2
 C cysteine            2.6          6           1
 D aspartate           2.2          5           1
 E glutamate           3.0          7           2
 F phenylalanine       2.2          5           1
 G glycine             6.9         16           2
 H histidine           0.4          1           1
 I isoleucine          3.9          9           2
 K lysine              4.3         10           1
 L leucine             9.5         22           2
 M methionine          3.4          8           1
 N asparagine          1.3          3           1
 P proline             6.5         15           2
 Q glutamine           2.2          5           1
 R arginine           10.3         24           3
 S serine             19.4         45           3
 T threonine           5.2         12           1
 V valine              6.9         16           1
 W tryptophan          2.2          5           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343209 
LOC100292658          1.000   PREDICTED: hypothetical protein 
LOC100288977          1.000   PREDICTED: hypothetical protein 
NHSL1                 0.023   NHS-like 1 
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.016   voltage-dependent calcium channel alpha 1G subunit i...
SRRM2                 0.016   splicing coactivator subunit SRm300 
CDC2L5                0.014   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.014   cell division cycle 2-like 5 isoform 2 
SFRS2B                0.014   splicing factor, arginine/serine-rich 2B 
CCDC130               0.012   coiled-coil domain containing 130 
LOC100293635          0.012   PREDICTED: hypothetical protein 
LOC100291143          0.012   PREDICTED: hypothetical protein XP_002347160 
LOC100288973          0.012   PREDICTED: hypothetical protein XP_002343023 
CHERP                 0.012   calcium homeostasis endoplasmic reticulum protein [...
SALL4                 0.012   sal-like 4 
STK10                 0.012   serine/threonine kinase 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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