Guide to the Human Genome
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Name: LOC100293635 Sequence: fasta or formatted (169aa) NCBI GI: 239755292
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         19           1
 C cysteine            3.0          5           1
 D aspartate           1.8          3           1
 E glutamate           1.8          3           1
 F phenylalanine       1.2          2           1
 G glycine             6.5         11           1
 H histidine           1.2          2           1
 I isoleucine          0.6          1           1
 K lysine              4.1          7           1
 L leucine             7.1         12           2
 M methionine          1.2          2           1
 N asparagine          0.6          1           1
 P proline             5.3          9           1
 Q glutamine           3.6          6           1
 R arginine            9.5         16           1
 S serine             16.6         28           4
 T threonine          13.6         23           2
 V valine              8.3         14           1
 W tryptophan          1.2          2           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291143          1.000   PREDICTED: hypothetical protein XP_002347160 
LOC100288973          1.000   PREDICTED: hypothetical protein XP_002343023 
LOC100131251          0.072   PREDICTED: hypothetical protein 
LOC100131251          0.072   PREDICTED: hypothetical protein 
LOC729792             0.052   PREDICTED: hypothetical protein 
LOC729792             0.052   PREDICTED: hypothetical protein 
LOC729792             0.052   PREDICTED: hypothetical protein 
LOC100294501          0.052   PREDICTED: hypothetical protein 
LOC100294249          0.052   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.052   PREDICTED: hypothetical protein 
LOC100294204          0.052   PREDICTED: hypothetical protein 
LOC100294136          0.052   PREDICTED: hypothetical protein 
LOC100294091          0.052   PREDICTED: hypothetical protein 
LOC730401             0.052   PREDICTED: hypothetical protein 
MUC5AC                0.042   mucin 5AC 
MUC5B                 0.042   mucin 5, subtype B, tracheobronchial 
MUC21                 0.042   mucin 21 
LOC730474             0.039   PREDICTED: hypothetical protein, partial 
LOC100132635          0.039   PREDICTED: similar to mucin 5, partial 
LOC730474             0.036   PREDICTED: hypothetical protein 
LOC100134138          0.033   PREDICTED: similar to mucin, partial 
MUC17                 0.033   mucin 17 
LOC100294236          0.033   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC16                 0.029   mucin 16 
LOC100294470          0.026   PREDICTED: hypothetical protein, partial 
LOC100133714          0.026   PREDICTED: similar to Mucin-12, partial 
NUP62                 0.026   nucleoporin 62kDa 
NUP62                 0.026   nucleoporin 62kDa 
NUP62                 0.026   nucleoporin 62kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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