Guide to the Human Genome
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Search of human proteins with 239744482

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744482 PREDICTED: hypothetical protein XP_002343162 [Homo
sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755663 PREDICTED: hypothetical protein [Homo sapiens]           239   3e-64
gi|239750171 PREDICTED: hypothetical protein XP_002347313 [Homo ...   239   3e-64
gi|239744482 PREDICTED: hypothetical protein XP_002343162 [Homo ...   239   3e-64
gi|122937424 one cut homeobox 3 [Homo sapiens]                         30   0.41 
gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens]         28   1.6  
gi|75750526 dual specificity phosphatase 28 [Homo sapiens]             27   3.5  
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]                      27   4.5  
gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo ...    27   4.5  
gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo s...    27   4.5  
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H...    26   5.9  
gi|49355757 SFT2 domain containing 3 [Homo sapiens]                    26   5.9  
gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo sa...    26   7.7  
gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo ...    26   7.7  
gi|239752721 PREDICTED: beta-lactamase-like protein ENSP00000383...    26   7.7  
gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo ...    26   7.7  
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ...    26   7.7  
gi|239747261 PREDICTED: beta-lactamase-like protein ENSP00000383...    26   7.7  
gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo ...    26   7.7  
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ...    26   7.7  
gi|239741085 PREDICTED: beta-lactamase-like protein ENSP00000383...    26   7.7  
gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...    26   7.7  

>gi|239755663 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score =  239 bits (611), Expect = 3e-64
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60
           MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS
Sbjct: 1   MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60

Query: 61  LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
           LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP
Sbjct: 61  LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117


>gi|239750171 PREDICTED: hypothetical protein XP_002347313 [Homo
           sapiens]
          Length = 117

 Score =  239 bits (611), Expect = 3e-64
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60
           MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS
Sbjct: 1   MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60

Query: 61  LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
           LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP
Sbjct: 61  LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117


>gi|239744482 PREDICTED: hypothetical protein XP_002343162 [Homo
           sapiens]
          Length = 117

 Score =  239 bits (611), Expect = 3e-64
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60
           MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS
Sbjct: 1   MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60

Query: 61  LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
           LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP
Sbjct: 61  LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117


>gi|122937424 one cut homeobox 3 [Homo sapiens]
          Length = 494

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 4   PHPVLSGHGEGTLGKDTRDREGAAGLF-AGSGREAFLLHVAAGTQTAALQGPLAGFG 59
           PH  L G  E  L +      G  G   AGSG  A LL    G   A   GP  G G
Sbjct: 247 PHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGG 303


>gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens]
          Length = 196

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 49  AALQGPLAGFGSLRPRTRLHTAVASLSRVGCS--TEGANTSRGLCQVITKQIPGDFLSSP 106
           AAL+  ++G G L        A  S SR+      E   T  G   +I  +I      SP
Sbjct: 2   AALKALVSGCGRLLRGLLAGPAATSWSRLPARGFREVVETQEGKTTIIEGRITATPKESP 61

Query: 107 RPP---GQCPL 114
            PP   GQCP+
Sbjct: 62  NPPNPSGQCPI 72


>gi|75750526 dual specificity phosphatase 28 [Homo sapiens]
          Length = 176

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 71  VASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
           + S    G   + A     LC  +++Q PG     PR PG   LRVP
Sbjct: 28  LGSARAAGAEEQLARAGVTLCVNVSRQQPG-----PRAPGVAELRVP 69


>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 26/86 (30%), Positives = 35/86 (40%)

Query: 25   GAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGA 84
            GAA L A  G    L+ +AAG +    QGP    G  R   R+   ++ ++       GA
Sbjct: 1046 GAAWLLAWPGLALPLVAMAAGGRWVRQQGPRVRRGISRLWLRVLLRLSPMAFRALQGCGA 1105

Query: 85   NTSRGLCQVITKQIPGDFLSSPRPPG 110
               RGL  +  K     F S    PG
Sbjct: 1106 VGDRGLFALYPKTNKDGFRSRLPVPG 1131


>gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo
           sapiens]
          Length = 706

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 44  AGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL 103
           AG    +  G LA  G+L  + +L  AV    R G   EG+   R   +  +   P   +
Sbjct: 157 AGLVGGSATGLLALSGALAAQAQLAAAVKE-DRAGVEAEGSRVERAPSRSASPSPPESLV 215

Query: 104 SSPRPPG 110
              RP G
Sbjct: 216 EEERPSG 222


>gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo
           sapiens]
          Length = 743

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 44  AGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL 103
           AG    +  G LA  G+L  + +L  AV    R G   EG+   R   +  +   P   +
Sbjct: 143 AGLVGGSATGLLALSGALAAQAQLAAAVKE-DRAGVEAEGSRVERAPSRSASPSPPESLV 201

Query: 104 SSPRPPG 110
              RP G
Sbjct: 202 EEERPSG 208


>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
           sapiens]
          Length = 859

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 4   PHPVLSGHGEGTLGKDTRDREGAAGLFAGSGR--EAFLLHVAAGTQT 48
           P PV  G G G LG       G  G  AGS     A LL+ AA T++
Sbjct: 666 PPPVGPGEGVGLLGTGREGTSGRGGSRAGSQHLTPAALLYRAAVTRS 712


>gi|49355757 SFT2 domain containing 3 [Homo sapiens]
          Length = 215

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 27  AGLFAGSGREAFLLHV-AAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSR 76
           A LFA  G  + LL V  AG Q AAL   L G       T L  A+  L R
Sbjct: 155 ATLFAALGLRSTLLTVLGAGAQVAALLAALVGLLPWGGGTALRLALGRLGR 205


>gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo
           sapiens]
          Length = 374

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 39  LLHVAAGTQTAALQGPLAGFGSLRP 63
           L H+A G + A LQ P+ G   +RP
Sbjct: 315 LFHIALGCRIAPLQKPVCGGPGVRP 339


>gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo
           sapiens]
          Length = 212

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 26/70 (37%)

Query: 65  TRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL--------------------S 104
           + L+T+++   +V C     NTS+ +CQ IT  +  DF+                    +
Sbjct: 39  SELNTSMSQRIKVTCK----NTSKCVCQEITLSL--DFVDHFLISNPDKSLLVKLVFPST 92

Query: 105 SPRPPGQCPL 114
           SP PP  CP+
Sbjct: 93  SPYPPSHCPI 102


>gi|239752721 PREDICTED: beta-lactamase-like protein
           ENSP00000383859-like [Homo sapiens]
          Length = 517

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 42  VAAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGD 101
           +AAG   +    PL   G  RP  ++++  A L+++  +  G    R L     K +   
Sbjct: 244 LAAGFYGSGRPAPLYDLGWYRPSGQMYSTAADLAKLAVALLGGGPRRLLRPDAAKTLLAP 303

Query: 102 FLSSP 106
            L+ P
Sbjct: 304 LLACP 308


>gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo
           sapiens]
          Length = 212

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 26/70 (37%)

Query: 65  TRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL--------------------S 104
           + L+T+++   +V C     NTS+ +CQ IT  +  DF+                    +
Sbjct: 39  SELNTSMSQRIKVTCK----NTSKCVCQEITLSL--DFVDHFLISNPDKSLLVKLVFPST 92

Query: 105 SPRPPGQCPL 114
           SP PP  CP+
Sbjct: 93  SPYPPSHCPI 102


>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
           sapiens]
          Length = 585

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 8   LSGHGEGTLGKDTRDREGAAGLFAGSGREA-FLLHVAAGTQTAALQGPLAGFG 59
           L G G G L ++ +  E       GSGRE   L+    G  T +L G   G G
Sbjct: 179 LLGKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPG 231


>gi|239747261 PREDICTED: beta-lactamase-like protein
           ENSP00000383859-like [Homo sapiens]
          Length = 517

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 42  VAAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGD 101
           +AAG   +    PL   G  RP  ++++  A L+++  +  G    R L     K +   
Sbjct: 244 LAAGFYGSGRPAPLYDLGWYRPSGQMYSTAADLAKLAVALLGGGPRRLLRPDAAKTLLAP 303

Query: 102 FLSSP 106
            L+ P
Sbjct: 304 LLACP 308


>gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo
           sapiens]
          Length = 212

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 26/70 (37%)

Query: 65  TRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL--------------------S 104
           + L+T+++   +V C     NTS+ +CQ IT  +  DF+                    +
Sbjct: 39  SELNTSMSQRIKVTCK----NTSKCVCQEITLSL--DFVDHFLISNPDKSLLVKLVFPST 92

Query: 105 SPRPPGQCPL 114
           SP PP  CP+
Sbjct: 93  SPYPPSHCPI 102


>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
           sapiens]
          Length = 585

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 8   LSGHGEGTLGKDTRDREGAAGLFAGSGREA-FLLHVAAGTQTAALQGPLAGFG 59
           L G G G L ++ +  E       GSGRE   L+    G  T +L G   G G
Sbjct: 179 LLGKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPG 231


>gi|239741085 PREDICTED: beta-lactamase-like protein
           ENSP00000383859-like [Homo sapiens]
          Length = 517

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 42  VAAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGD 101
           +AAG   +    PL   G  RP  ++++  A L+++  +  G    R L     K +   
Sbjct: 244 LAAGFYGSGRPAPLYDLGWYRPSGQMYSTAADLAKLAVALLGGGPRRLLRPDAAKTLLAP 303

Query: 102 FLSSP 106
            L+ P
Sbjct: 304 LLACP 308


>gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
           2 [Homo sapiens]
          Length = 1704

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 74  LSRVGCSTEGANTSRGLCQVITKQIPGDF 102
           LS VGCST G N+  G   ++    P  F
Sbjct: 217 LSFVGCSTSGTNSGNGTNGLLEGSPPSPF 245


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,260,932
Number of Sequences: 37866
Number of extensions: 215727
Number of successful extensions: 583
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 23
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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