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Search of human proteins with 239744482
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744482 PREDICTED: hypothetical protein XP_002343162 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755663 PREDICTED: hypothetical protein [Homo sapiens] 239 3e-64
gi|239750171 PREDICTED: hypothetical protein XP_002347313 [Homo ... 239 3e-64
gi|239744482 PREDICTED: hypothetical protein XP_002343162 [Homo ... 239 3e-64
gi|122937424 one cut homeobox 3 [Homo sapiens] 30 0.41
gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens] 28 1.6
gi|75750526 dual specificity phosphatase 28 [Homo sapiens] 27 3.5
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 27 4.5
gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo ... 27 4.5
gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo s... 27 4.5
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 26 5.9
gi|49355757 SFT2 domain containing 3 [Homo sapiens] 26 5.9
gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo sa... 26 7.7
gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo ... 26 7.7
gi|239752721 PREDICTED: beta-lactamase-like protein ENSP00000383... 26 7.7
gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo ... 26 7.7
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 26 7.7
gi|239747261 PREDICTED: beta-lactamase-like protein ENSP00000383... 26 7.7
gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo ... 26 7.7
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 26 7.7
gi|239741085 PREDICTED: beta-lactamase-like protein ENSP00000383... 26 7.7
gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 26 7.7
>gi|239755663 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 239 bits (611), Expect = 3e-64
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60
MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS
Sbjct: 1 MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60
Query: 61 LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP
Sbjct: 61 LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
>gi|239750171 PREDICTED: hypothetical protein XP_002347313 [Homo
sapiens]
Length = 117
Score = 239 bits (611), Expect = 3e-64
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60
MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS
Sbjct: 1 MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60
Query: 61 LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP
Sbjct: 61 LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
>gi|239744482 PREDICTED: hypothetical protein XP_002343162 [Homo
sapiens]
Length = 117
Score = 239 bits (611), Expect = 3e-64
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60
MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS
Sbjct: 1 MTVPHPVLSGHGEGTLGKDTRDREGAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGS 60
Query: 61 LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP
Sbjct: 61 LRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 4 PHPVLSGHGEGTLGKDTRDREGAAGLF-AGSGREAFLLHVAAGTQTAALQGPLAGFG 59
PH L G E L + G G AGSG A LL G A GP G G
Sbjct: 247 PHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGG 303
>gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens]
Length = 196
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 49 AALQGPLAGFGSLRPRTRLHTAVASLSRVGCS--TEGANTSRGLCQVITKQIPGDFLSSP 106
AAL+ ++G G L A S SR+ E T G +I +I SP
Sbjct: 2 AALKALVSGCGRLLRGLLAGPAATSWSRLPARGFREVVETQEGKTTIIEGRITATPKESP 61
Query: 107 RPP---GQCPL 114
PP GQCP+
Sbjct: 62 NPPNPSGQCPI 72
>gi|75750526 dual specificity phosphatase 28 [Homo sapiens]
Length = 176
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 71 VASLSRVGCSTEGANTSRGLCQVITKQIPGDFLSSPRPPGQCPLRVP 117
+ S G + A LC +++Q PG PR PG LRVP
Sbjct: 28 LGSARAAGAEEQLARAGVTLCVNVSRQQPG-----PRAPGVAELRVP 69
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 26.6 bits (57), Expect = 4.5
Identities = 26/86 (30%), Positives = 35/86 (40%)
Query: 25 GAAGLFAGSGREAFLLHVAAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGA 84
GAA L A G L+ +AAG + QGP G R R+ ++ ++ GA
Sbjct: 1046 GAAWLLAWPGLALPLVAMAAGGRWVRQQGPRVRRGISRLWLRVLLRLSPMAFRALQGCGA 1105
Query: 85 NTSRGLCQVITKQIPGDFLSSPRPPG 110
RGL + K F S PG
Sbjct: 1106 VGDRGLFALYPKTNKDGFRSRLPVPG 1131
>gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo
sapiens]
Length = 706
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 44 AGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL 103
AG + G LA G+L + +L AV R G EG+ R + + P +
Sbjct: 157 AGLVGGSATGLLALSGALAAQAQLAAAVKE-DRAGVEAEGSRVERAPSRSASPSPPESLV 215
Query: 104 SSPRPPG 110
RP G
Sbjct: 216 EEERPSG 222
>gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo
sapiens]
Length = 743
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 44 AGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL 103
AG + G LA G+L + +L AV R G EG+ R + + P +
Sbjct: 143 AGLVGGSATGLLALSGALAAQAQLAAAVKE-DRAGVEAEGSRVERAPSRSASPSPPESLV 201
Query: 104 SSPRPPG 110
RP G
Sbjct: 202 EEERPSG 208
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 4 PHPVLSGHGEGTLGKDTRDREGAAGLFAGSGR--EAFLLHVAAGTQT 48
P PV G G G LG G G AGS A LL+ AA T++
Sbjct: 666 PPPVGPGEGVGLLGTGREGTSGRGGSRAGSQHLTPAALLYRAAVTRS 712
>gi|49355757 SFT2 domain containing 3 [Homo sapiens]
Length = 215
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 27 AGLFAGSGREAFLLHV-AAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSR 76
A LFA G + LL V AG Q AAL L G T L A+ L R
Sbjct: 155 ATLFAALGLRSTLLTVLGAGAQVAALLAALVGLLPWGGGTALRLALGRLGR 205
>gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo
sapiens]
Length = 374
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 39 LLHVAAGTQTAALQGPLAGFGSLRP 63
L H+A G + A LQ P+ G +RP
Sbjct: 315 LFHIALGCRIAPLQKPVCGGPGVRP 339
>gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo
sapiens]
Length = 212
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 26/70 (37%)
Query: 65 TRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL--------------------S 104
+ L+T+++ +V C NTS+ +CQ IT + DF+ +
Sbjct: 39 SELNTSMSQRIKVTCK----NTSKCVCQEITLSL--DFVDHFLISNPDKSLLVKLVFPST 92
Query: 105 SPRPPGQCPL 114
SP PP CP+
Sbjct: 93 SPYPPSHCPI 102
>gi|239752721 PREDICTED: beta-lactamase-like protein
ENSP00000383859-like [Homo sapiens]
Length = 517
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 42 VAAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGD 101
+AAG + PL G RP ++++ A L+++ + G R L K +
Sbjct: 244 LAAGFYGSGRPAPLYDLGWYRPSGQMYSTAADLAKLAVALLGGGPRRLLRPDAAKTLLAP 303
Query: 102 FLSSP 106
L+ P
Sbjct: 304 LLACP 308
>gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo
sapiens]
Length = 212
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 26/70 (37%)
Query: 65 TRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL--------------------S 104
+ L+T+++ +V C NTS+ +CQ IT + DF+ +
Sbjct: 39 SELNTSMSQRIKVTCK----NTSKCVCQEITLSL--DFVDHFLISNPDKSLLVKLVFPST 92
Query: 105 SPRPPGQCPL 114
SP PP CP+
Sbjct: 93 SPYPPSHCPI 102
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 8 LSGHGEGTLGKDTRDREGAAGLFAGSGREA-FLLHVAAGTQTAALQGPLAGFG 59
L G G G L ++ + E GSGRE L+ G T +L G G G
Sbjct: 179 LLGKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPG 231
>gi|239747261 PREDICTED: beta-lactamase-like protein
ENSP00000383859-like [Homo sapiens]
Length = 517
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 42 VAAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGD 101
+AAG + PL G RP ++++ A L+++ + G R L K +
Sbjct: 244 LAAGFYGSGRPAPLYDLGWYRPSGQMYSTAADLAKLAVALLGGGPRRLLRPDAAKTLLAP 303
Query: 102 FLSSP 106
L+ P
Sbjct: 304 LLACP 308
>gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo
sapiens]
Length = 212
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 26/70 (37%)
Query: 65 TRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGDFL--------------------S 104
+ L+T+++ +V C NTS+ +CQ IT + DF+ +
Sbjct: 39 SELNTSMSQRIKVTCK----NTSKCVCQEITLSL--DFVDHFLISNPDKSLLVKLVFPST 92
Query: 105 SPRPPGQCPL 114
SP PP CP+
Sbjct: 93 SPYPPSHCPI 102
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 8 LSGHGEGTLGKDTRDREGAAGLFAGSGREA-FLLHVAAGTQTAALQGPLAGFG 59
L G G G L ++ + E GSGRE L+ G T +L G G G
Sbjct: 179 LLGKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPG 231
>gi|239741085 PREDICTED: beta-lactamase-like protein
ENSP00000383859-like [Homo sapiens]
Length = 517
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 42 VAAGTQTAALQGPLAGFGSLRPRTRLHTAVASLSRVGCSTEGANTSRGLCQVITKQIPGD 101
+AAG + PL G RP ++++ A L+++ + G R L K +
Sbjct: 244 LAAGFYGSGRPAPLYDLGWYRPSGQMYSTAADLAKLAVALLGGGPRRLLRPDAAKTLLAP 303
Query: 102 FLSSP 106
L+ P
Sbjct: 304 LLACP 308
>gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
2 [Homo sapiens]
Length = 1704
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 74 LSRVGCSTEGANTSRGLCQVITKQIPGDF 102
LS VGCST G N+ G ++ P F
Sbjct: 217 LSFVGCSTSGTNSGNGTNGLLEGSPPSPF 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,260,932
Number of Sequences: 37866
Number of extensions: 215727
Number of successful extensions: 583
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 23
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.