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Search of human proteins with 239744440
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 519 e-147
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 516 e-147
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ... 516 e-147
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 57 2e-08
gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom... 55 5e-08
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 50 2e-06
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 50 2e-06
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 50 2e-06
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 50 3e-06
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 50 3e-06
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 50 3e-06
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens] 50 3e-06
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens] 50 3e-06
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 50 3e-06
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 50 3e-06
gi|187608508 centromere protein L isoform 1 [Homo sapiens] 48 8e-06
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 48 1e-05
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 48 1e-05
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 47 1e-05
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 46 3e-05
gi|40807368 potassium channel regulator isoform 2 [Homo sapiens] 46 3e-05
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 46 3e-05
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 45 5e-05
gi|61969666 arginine-fifty homeobox [Homo sapiens] 45 5e-05
gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens] 44 1e-04
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 44 2e-04
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 43 2e-04
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 43 2e-04
gi|94680985 cyclin J-like [Homo sapiens] 42 7e-04
gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor ... 41 0.001
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 519 bits (1336), Expect = e-147
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MCKDTEGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60
MCKDTEGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS
Sbjct: 1 MCKDTEGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60
Query: 61 DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120
DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE
Sbjct: 61 DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120
Query: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180
IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH
Sbjct: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180
Query: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240
GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT
Sbjct: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240
Query: 241 VNEAVALAVPLGGHLPAEHGA 261
VNEAVALAVPLGGHLPAEHGA
Sbjct: 241 VNEAVALAVPLGGHLPAEHGA 261
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 516 bits (1329), Expect = e-147
Identities = 260/261 (99%), Positives = 260/261 (99%)
Query: 1 MCKDTEGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60
MCKDTEGLA YPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS
Sbjct: 1 MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60
Query: 61 DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120
DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE
Sbjct: 61 DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120
Query: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180
IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH
Sbjct: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180
Query: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240
GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT
Sbjct: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240
Query: 241 VNEAVALAVPLGGHLPAEHGA 261
VNEAVALAVPLGGHLPAEHGA
Sbjct: 241 VNEAVALAVPLGGHLPAEHGA 261
>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
sapiens]
Length = 261
Score = 516 bits (1329), Expect = e-147
Identities = 260/261 (99%), Positives = 260/261 (99%)
Query: 1 MCKDTEGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60
MCKDTEGLA YPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS
Sbjct: 1 MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60
Query: 61 DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120
DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE
Sbjct: 61 DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120
Query: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180
IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH
Sbjct: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180
Query: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240
GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT
Sbjct: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240
Query: 241 VNEAVALAVPLGGHLPAEHGA 261
VNEAVALAVPLGGHLPAEHGA
Sbjct: 241 VNEAVALAVPLGGHLPAEHGA 261
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 56.6 bits (135), Expect = 2e-08
Identities = 29/39 (74%), Positives = 33/39 (84%)
Query: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
+ LAL P+LE SGTI A NLRLLGSSDSPASAS+VAG+
Sbjct: 456 QSLALSPKLECSGTILAHSNLRLLGSSDSPASASRVAGI 494
>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
sapiens]
Length = 211
Score = 55.5 bits (132), Expect = 5e-08
Identities = 28/38 (73%), Positives = 31/38 (81%)
Query: 7 GLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
GL + +E SGTI ARCNLRL GSSDSPASASQVAG+
Sbjct: 157 GLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGI 194
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 50.4 bits (119), Expect = 2e-06
Identities = 26/37 (70%), Positives = 29/37 (78%)
Query: 8 LALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
LAL PRLE SG ISA CN L GSS+SPA AS+VAG+
Sbjct: 138 LALSPRLECSGKISAHCNPHLQGSSNSPAQASRVAGI 174
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 50.4 bits (119), Expect = 2e-06
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 12 PRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSM 47
PRLE SGTIS CNL L GSS+SPASAS+VAG+ +
Sbjct: 798 PRLECSGTISPHCNLLLPGSSNSPASASRVAGITGL 833
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 50.4 bits (119), Expect = 2e-06
Identities = 33/72 (45%), Positives = 38/72 (52%)
Query: 3 KDTEGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDF 62
K+ G PRLE SG I ARCNL LGSSD P SASQVA + ID + +
Sbjct: 201 KNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENI 260
Query: 63 QYLFHEDLEAVD 74
L E LEA +
Sbjct: 261 GDLIQETLEAFE 272
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
RLE +GTISA CNL L GSSDSPAS+S+VAG+
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
RLE +GTISA CNL L GSSDSPAS+S+VAG+
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 49.7 bits (117), Expect = 3e-06
Identities = 26/35 (74%), Positives = 28/35 (80%)
Query: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASASQ 40
E LAL PRLE +G ISA CNL L GSS+SPASASQ
Sbjct: 57 ESLALSPRLERNGMISAHCNLCLTGSSNSPASASQ 91
>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
Length = 600
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAG 43
RLE+SGTI A CN RLLGS+DS ASASQV G
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTG 63
>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
Length = 619
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAG 43
RLE+SGTI A CN RLLGS+DS ASASQV G
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTG 63
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
EGL L+PRLE S TI+A C+L LL SS+ P S SQV G
Sbjct: 584 EGLTLWPRLECSSTITAHCSLNLLDSSNPPTSTSQVVG 621
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 49.7 bits (117), Expect = 3e-06
Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAG-LQSMWVRRIDAE 55
RLE SG ISA C+L L GSSDSPASASQ+AG ++W + AE
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASASQIAGTTDAIWNEQEKAE 51
>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
Length = 390
Score = 48.1 bits (113), Expect = 8e-06
Identities = 25/38 (65%), Positives = 27/38 (71%)
Query: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
+GL L PRLE+SGTI CNL LLGSSD A QVAG
Sbjct: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAG 177
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/35 (71%), Positives = 25/35 (71%)
Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGLQSM 47
RLE SG I A CNLRL GS DSPASASQ AG M
Sbjct: 431 RLECSGMILAHCNLRLPGSRDSPASASQAAGTTGM 465
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo
sapiens]
Length = 183
Score = 47.8 bits (112), Expect = 1e-05
Identities = 30/57 (52%), Positives = 33/57 (57%)
Query: 8 LALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDFQY 64
L L PRLE SG ISA CNL LL SSDS ASAS++ M R A I S +Y
Sbjct: 26 LVLSPRLEPSGVISAHCNLHLLASSDSSASASRLCQRVMMPSRTNLATGIPSSKVKY 82
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 47.4 bits (111), Expect = 1e-05
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL-------QSMWVRRIDAEAIA 58
+ LAL P L S ISA CN RL GSSD PASASQV G+ Q RI+ A++
Sbjct: 1098 QSLALSPGLGCSSAISAHCNFRLPGSSDFPASASQVDGITGACHHTQPSEKIRIEIIALS 1157
Query: 59 QSDFQYLFHEDLE 71
+D Q + ++
Sbjct: 1158 LNDSQVTMDDTIQ 1170
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASAS 39
+ LAL P+LE SG + A CNL LLGSS SPASAS
Sbjct: 134 QNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
>gi|40807368 potassium channel regulator isoform 2 [Homo sapiens]
Length = 229
Score = 46.2 bits (108), Expect = 3e-05
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWV 49
RL +G ISA NLRL GSSDSPASAS+VAG+ M++
Sbjct: 193 RLVCNGVISAHHNLRLWGSSDSPASASRVAGITGMFL 229
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 46.2 bits (108), Expect = 3e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 12 PRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
PRLE SGT+ A C+L+LL SS+ P SASQVAG
Sbjct: 442 PRLECSGTVIAHCSLKLLDSSNPPTSASQVAG 473
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 45.4 bits (106), Expect = 5e-05
Identities = 23/37 (62%), Positives = 26/37 (70%)
Query: 8 LALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
L L PR E SG +SA CNL L GSSDS AS +VAG+
Sbjct: 109 LTLLPRPECSGAVSAHCNLHLPGSSDSHASVPRVAGI 145
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 45.4 bits (106), Expect = 5e-05
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 10 LYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDFQYLFHED 69
L +LE SGT+SA C+L L GS+D P SAS+VA + +RR E ++ F + +E+
Sbjct: 38 LLSKLECSGTVSAYCSLNLPGSTDPPTSASRVAATTA--IRRRHKE---RTSFTHQQYEE 92
Query: 70 LEAV 73
LEA+
Sbjct: 93 LEAL 96
>gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens]
Length = 306
Score = 44.3 bits (103), Expect = 1e-04
Identities = 24/35 (68%), Positives = 25/35 (71%)
Query: 8 LALYPRLEFSGTISARCNLRLLGSSDSPASASQVA 42
L L PRLE +G SA N RL GS DSPASASQVA
Sbjct: 10 LTLSPRLEHNGMTSAHHNFRLPGSRDSPASASQVA 44
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/32 (75%), Positives = 24/32 (75%)
Query: 8 LALYPRLEFSGTISARCNLRLLGSSDSPASAS 39
LAL PRLE SG I A CNL LLGSSDS A AS
Sbjct: 104 LALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 4 DTEGLALYPRLEFSGTISARCNLRLLGSSDSPASAS 39
+ + L L PRLE G I A C+L+LLGSSD P SAS
Sbjct: 396 ERQDLTLSPRLECGGVIMAYCSLKLLGSSDPPTSAS 431
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 43.1 bits (100), Expect = 2e-04
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
+ LA+ PRLE +G ISA C L L SSDSP S S+V G
Sbjct: 71 KSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGG 108
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 41.6 bits (96), Expect = 7e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 10 LYPRLEFSGTISARCNLRLLGSSDSPASA 38
L PRL+ SG ISA CNL L GSS+SPASA
Sbjct: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASA 127
>gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor
[Homo sapiens]
Length = 381
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 18 GTISARCNLRLLGSSDSPASASQVAGL 44
G ISA CNLRL S DSPASAS+VAG+
Sbjct: 342 GMISAHCNLRLPDSRDSPASASRVAGI 368
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,383,236
Number of Sequences: 37866
Number of extensions: 473890
Number of successful extensions: 1204
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 73
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.