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Search of human proteins with 239744415
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C.
elegans) [Homo sapiens]
(503 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 1068 0.0
gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 1063 0.0
gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 393 e-109
gi|45580709 unc-93 homolog B1 [Homo sapiens] 369 e-102
gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo ... 345 7e-95
gi|110832843 TBP-associated factor 4 [Homo sapiens] 51 2e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 1e-05
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 49 1e-05
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 48 2e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 48 2e-05
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 47 3e-05
gi|24308352 DMRT-like family B with proline-rich C-terminal, 1 [... 47 4e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 5e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 46 7e-05
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 46 9e-05
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 45 1e-04
gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens] 45 1e-04
gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens] 45 1e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 2e-04
gi|22027541 programmed cell death 7 [Homo sapiens] 44 3e-04
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 44 4e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 44 4e-04
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 44 4e-04
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 44 4e-04
>gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 503
Score = 1068 bits (2763), Expect = 0.0
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE 60
MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE
Sbjct: 1 MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE 60
Query: 61 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 120
RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP
Sbjct: 61 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 120
Query: 121 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 180
QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE
Sbjct: 121 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 180
Query: 181 QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQI 240
QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQI
Sbjct: 181 QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQI 240
Query: 241 LPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR 300
LPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR
Sbjct: 241 LPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR 300
Query: 301 LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG 360
LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG
Sbjct: 301 LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG 360
Query: 361 EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV 420
EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV
Sbjct: 361 EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV 420
Query: 421 GLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGA 480
GLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGA
Sbjct: 421 GLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGA 480
Query: 481 PSCTPAGPGLAHTIPHSPQPLYP 503
PSCTPAGPGLAHTIPHSPQPLYP
Sbjct: 481 PSCTPAGPGLAHTIPHSPQPLYP 503
>gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 529
Score = 1063 bits (2749), Expect = 0.0
Identities = 500/503 (99%), Positives = 502/503 (99%)
Query: 1 MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE 60
+AGAGVHLLLTFILFFWAPVPRVLQH WILCVAAALWGVGSALNNTGLSTLLGILY+DKE
Sbjct: 27 VAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNNTGLSTLLGILYKDKE 86
Query: 61 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 120
RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP
Sbjct: 87 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 146
Query: 121 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 180
QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE
Sbjct: 147 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 206
Query: 181 QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQI 240
QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQI
Sbjct: 207 QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQI 266
Query: 241 LPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR 300
LPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR
Sbjct: 267 LPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR 326
Query: 301 LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG 360
LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG
Sbjct: 327 LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG 386
Query: 361 EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV 420
EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV
Sbjct: 387 EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV 446
Query: 421 GLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGA 480
GLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGA
Sbjct: 447 GLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGA 506
Query: 481 PSCTPAGPGLAHTIPHSPQPLYP 503
PSCTPAGPGLAHTIPHSPQPLYP
Sbjct: 507 PSCTPAGPGLAHTIPHSPQPLYP 529
>gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 312
Score = 393 bits (1009), Expect = e-109
Identities = 188/191 (98%), Positives = 190/191 (99%)
Query: 1 MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE 60
+AGAGVHLLLTFILFFWAPVPRVLQH WILCVAAALWGVGSALNNTGLSTLLGILY+DKE
Sbjct: 27 VAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNNTGLSTLLGILYKDKE 86
Query: 61 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 120
RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP
Sbjct: 87 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 146
Query: 121 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 180
QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE
Sbjct: 147 QPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYE 206
Query: 181 QAQRGDGPEEH 191
QAQRGDGPEEH
Sbjct: 207 QAQRGDGPEEH 217
Score = 106 bits (265), Expect = 4e-23
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 422 LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED 470
LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED
Sbjct: 218 LSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGED 266
>gi|45580709 unc-93 homolog B1 [Homo sapiens]
Length = 597
Score = 369 bits (946), Expect = e-102
Identities = 181/191 (94%), Positives = 184/191 (96%), Gaps = 1/191 (0%)
Query: 1 MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE 60
+AGAGVHLLLTFILFFWAPVPRVLQH WIL VAAALWGVGSALN TGLSTLLGILYEDKE
Sbjct: 406 VAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKE 465
Query: 61 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 120
RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLA+LLVTLVAAAVSYLRMEQKLRRGVAP
Sbjct: 466 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAVLLVTLVAAAVSYLRMEQKLRRGVAPR 525
Query: 121 QPRIPRPQHKVRGYRYL-EDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPY 179
QPRIPRPQHKVRGYRYL EDNS+ESDAE EHGDGAEEEAPPAGPRPGPEPAGLGRRPCPY
Sbjct: 526 QPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPY 585
Query: 180 EQAQRGDGPEE 190
EQAQ GDGPEE
Sbjct: 586 EQAQGGDGPEE 596
>gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo
sapiens]
Length = 319
Score = 345 bits (884), Expect = 7e-95
Identities = 190/270 (70%), Positives = 199/270 (73%), Gaps = 19/270 (7%)
Query: 1 MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE 60
+AGAGVHLLLTFILFFWAPVPRVLQH WIL VAAALW VGS+LN TGLSTLLGILYEDKE
Sbjct: 46 VAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAAALWVVGSSLNKTGLSTLLGILYEDKE 105
Query: 61 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 120
RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLA+LLVTLVAA VSYLRMEQKLRRGVAP
Sbjct: 106 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLALLLVTLVAATVSYLRMEQKLRRGVAPR 165
Query: 121 QPRIPRPQHKVRGYRYL-EDNSEESDAEDEHGDG--AEEEAPPAGPRPGPEPAGLGRRPC 177
QPRIPRPQHKVRGYRYL EDNS+ESDAE + GDG AE EAPPAGPRPGPEPAGLGRRPC
Sbjct: 166 QPRIPRPQHKVRGYRYLEEDNSDESDAEGDLGDGEEAEAEAPPAGPRPGPEPAGLGRRPC 225
Query: 178 PYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFE--NTAETLRALSTRPSAGAGSGSSCDP 235
PYEQAQ G G P A + + LR C
Sbjct: 226 PYEQAQGAMGRRSSEGPPGPRTQPPSSPASVYHVLGRGDPLRV------------PRCLQ 273
Query: 236 APLQILPAVGRGPGPRVTALCTSYPQGPPR 265
PL LP VG P PR + + PQ PPR
Sbjct: 274 RPLSPLPHVGDAP-PRAW-VTSGLPQPPPR 301
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 51.2 bits (121), Expect = 2e-06
Identities = 80/291 (27%), Positives = 101/291 (34%), Gaps = 47/291 (16%)
Query: 151 GDGAEEEAPPAGPRP----GPEPAGLGRRPCPYEQAQR-GDGPEEHPLQGGVEPWEPLGQ 205
G G + PP+ RP GP P RP P A P + G EP P G
Sbjct: 99 GGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEP-APAGP 157
Query: 206 AQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVT-----ALCTSYP 260
A+ A L+ R G G G P P PA GPG T AL S+
Sbjct: 158 AKPAGPAA-----LAARAGPGPGPGPGPGPGPGPGKPA---GPGAAQTLNGSAALLNSHH 209
Query: 261 QGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGV 320
P + L +L P PG ++ P + A A P A + P P
Sbjct: 210 AAAP--AVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAA-APPAPAAPSPPAAPAPAAP 266
Query: 321 GSAAPYWGRGEVSVG-PAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRD------RGG 373
+A P ++ P P PP A P +P P +GG+AG GG
Sbjct: 267 AAAPPPPPPAPATLARPPGHPAGPPTAAPAVP-----PPAAAQNGGSAGAAPAPAPAAGG 321
Query: 374 CDGVAGPPWVQRARQTP-------------EAHPPGACVGILGPPATIPAS 411
GV+G P A P +A PP A PA+ AS
Sbjct: 322 PAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAAS 372
Score = 36.2 bits (82), Expect = 0.071
Identities = 71/271 (26%), Positives = 85/271 (31%), Gaps = 68/271 (25%)
Query: 154 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTA 213
A E PAGP PA L R P G GP P G +P P G AQ +A
Sbjct: 148 AGPEPAPAGPAKPAGPAALAARAGPGP----GPGPGPGPGPGPGKPAGP-GAAQTLNGSA 202
Query: 214 ETLRA------------------------------LSTRPSAGAGS-----GSSCDPAPL 238
L + + T P GA + S AP
Sbjct: 203 ALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPA 262
Query: 239 QILPAVGRGPGPRVTALCT---SYPQGPPRATIFL------QKMSNKEILYCPYWGVPGR 289
PA P P A +P GPP A + Q + P G
Sbjct: 263 PAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGP 322
Query: 290 GGRSA-PGMHARLARPLGAV-------VTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPF 341
G S PG A A P V V Q + ++ P + +GP Q
Sbjct: 323 AGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGA 382
Query: 342 LP-PEAPPPIPACLCQPQPGEGSG---GAAG 368
LP P A PP P PG +G GAAG
Sbjct: 383 LPSPAAVPP-------PAPGTPTGLPKGAAG 406
Score = 32.7 bits (73), Expect = 0.79
Identities = 54/200 (27%), Positives = 61/200 (30%), Gaps = 49/200 (24%)
Query: 295 PGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACL 354
P + A A LG V G G G AAP G P AP P PA
Sbjct: 48 PEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGA-------------PGAAPEPPPAGR 94
Query: 355 CQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRV 414
+P G G R GPP +R PP A L PP A
Sbjct: 95 ARP-------GGGGPQR------PGPPSPRRPLVPAGPAPPAAK---LRPPPEGSAG--- 135
Query: 415 YFRATVGLSCDAHEKQAGGGADPLQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGP 474
SC A A P P P + PA ++ GP
Sbjct: 136 --------SCAPVPAAAAVAAGP---------EPAPAGPAKPAGPAALAARAGPGPGPGP 178
Query: 475 WEGHGAPSCTPAGPGLAHTI 494
G G PAGPG A T+
Sbjct: 179 GPGPGPGPGKPAGPGAAQTL 198
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.9 bits (115), Expect = 1e-05
Identities = 88/304 (28%), Positives = 106/304 (34%), Gaps = 64/304 (21%)
Query: 119 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGD--GAEEEAPPA-----GPRPGPEPAG 171
PP P PR Q V G+ + N E G G + PP GP+ P P G
Sbjct: 565 PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG 624
Query: 172 LGRRPCPYEQAQRGDG--PEEHPLQGGVEPWEPLGQ-----AQGFENTAETLRALSTRPS 224
G +GD P LQG P G+ G + A A +
Sbjct: 625 PG--------GDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGD 676
Query: 225 AGAGSGSSCDPAPLQILPAVGRGPGPRVT--ALCTSYPQGPPRA--TIFLQKMSNKEILY 280
AGA P L P + G GP + P GPP A T LQ
Sbjct: 677 AGAPGERG--PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQ--------- 725
Query: 281 CPYWGVPG-RGGRSAPGMHARLARPLGAVVTG-PDLGGPQG----VGSAAPYWGRGEVS- 333
G+PG RGG +PG P G G P GP+G +G P G+
Sbjct: 726 ----GMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGE 781
Query: 334 ---------VGPAHQPFLPPEAPPPIPACLC-----QPQPG-EGSGGAAG-RDRGGCDGV 377
GP P E PP PA +PG +G GA G + GG GV
Sbjct: 782 GGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGV 841
Query: 378 AGPP 381
AGPP
Sbjct: 842 AGPP 845
Score = 40.4 bits (93), Expect = 0.004
Identities = 79/284 (27%), Positives = 89/284 (31%), Gaps = 60/284 (21%)
Query: 143 ESDAEDEHGDGAEEEAP----PAGPRPGPEPAG-LGRRPCPYEQAQRGDGPEEHPLQGGV 197
E A G E AP PAGP P G G R P RG E P + GV
Sbjct: 472 EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE--PGRDGV 529
Query: 198 EPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRG--PGPRVTAL 255
P P + P + G GS P P GR PGP
Sbjct: 530 -PGGP---------------GMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGP----- 568
Query: 256 CTSYPQGPPRATIFLQKMSNKEILYCPYWGVPG----RGGRSAPGMHARLAR-------- 303
S P+G P F N G PG RGG PG +
Sbjct: 569 --SGPRGQPGVMGFPGPKGND--------GAPGKNGERGGPGGPGPQGPPGKNGETGPQG 618
Query: 304 PLGAVVTGPDLG--GPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGE 361
P G G D G GP G G G GP + P E P A G+
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQGLQGLPGTG----GPPGENGKPGEPGPKGDAGAPGAPGGK 674
Query: 362 GSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPP 405
G GA G G G+AG P ++ P G GPP
Sbjct: 675 GDAGAPGER--GPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPP 716
Score = 38.1 bits (87), Expect = 0.019
Identities = 80/269 (29%), Positives = 94/269 (34%), Gaps = 45/269 (16%)
Query: 160 PAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL 219
P P EP G G R P E+ + G P GG P P G QG + R
Sbjct: 812 PGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGP-PGGSGPAGPPG-PQGVKGE----RGS 865
Query: 220 STRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEIL 279
P A G+ P P P PGP P G P N
Sbjct: 866 PGGPGAAGFPGARGLPGP----PGSNGNPGP-------PGPSGSPGKDGPPGPAGNTGAP 914
Query: 280 YCPYWGVPG-------RGGRSAPGMHA--RLARPLG-AVVTGP-DLGGPQGV----GSAA 324
P GV G G + +PG PLG A +TG L GP G+ GS
Sbjct: 915 GSP--GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPG 972
Query: 325 PYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG-EGSGGAAGRD-RGGCDGVAGPPW 382
P +GE A+ L E PP P Q PG G+ G GRD G DG+ G
Sbjct: 973 PQGVKGESGKPGANG--LSGERGPPGP----QGLPGLAGTAGEPGRDGNPGSDGLPGRDG 1026
Query: 383 VQRAR-QTPEAHPPGA--CVGILGPPATI 408
+ E PGA G GPP +
Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGPPGPV 1055
Score = 36.6 bits (83), Expect = 0.055
Identities = 53/175 (30%), Positives = 62/175 (35%), Gaps = 30/175 (17%)
Query: 221 TRPSAGAG-SGSSCDPAPLQI--------LPAVGRGPG-PRVTALCTSYPQGPPRATIFL 270
TRP G G G DP P I +P PG P +C S P GP
Sbjct: 96 TRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP------- 148
Query: 271 QKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRG 330
Q S + Y GV G PG A P G T G P G P G
Sbjct: 149 QNYSPQYDSYDVKSGVAVGGLAGYPGP-AGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPG 207
Query: 331 EVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRD-RGGCDGVAGPPWVQ 384
+ GP+ P P P PA G G +GR R G G+ GPP ++
Sbjct: 208 QA--GPSGPPGPPGAIGPSGPA---------GKDGESGRPGRPGERGLPGPPGIK 251
Score = 35.4 bits (80), Expect = 0.12
Identities = 79/287 (27%), Positives = 91/287 (31%), Gaps = 46/287 (16%)
Query: 152 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFEN 211
+G E PAG R P PAG P DG P G+ P P G +
Sbjct: 497 NGIPGEKGPAGERGAPGPAG----PRGAAGEPGRDGVPGGPGMRGM-PGSPGGPGSDGKP 551
Query: 212 TAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGR--------------GPGPRVTALCT 257
+ S RP SG P + G GPGP+
Sbjct: 552 GPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKN 611
Query: 258 SY--PQGPPRATIFLQKMSNKEILYCP----YWGVPGRGGRSAPGMHARLARPLGAVVTG 311
PQGPP T +K P G+PG GG PG + + P G
Sbjct: 612 GETGPQGPPGPT---GPGGDKGDTGPPGPQGLQGLPGTGG--PPGENGKPGEP-GPKGDA 665
Query: 312 PDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGR-- 369
G P G G A RG G A P L A PP P G GAAG
Sbjct: 666 GAPGAPGGKGDAGAPGERGPP--GLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPG 723
Query: 370 ------DRGGCD-----GVAGPPWVQRARQTPEAHPPGACVGILGPP 405
+RGG G G P A P P G +GPP
Sbjct: 724 LQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPP 770
Score = 33.9 bits (76), Expect = 0.35
Identities = 44/130 (33%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
Query: 285 GVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQG-VGSAAPYWGRGEVS-VGPAHQPFL 342
G+PGR G S G R P GP G VG A RGE GPA P
Sbjct: 1020 GLPGRDG-SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGP 1078
Query: 343 PPEAPPPIPACLCQPQPGEGSGGAAG--RDRG-----GCDGVAGPPWVQRARQTPEAHPP 395
P P + G GAAG RG G G GP Q A +P P
Sbjct: 1079 AGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGP 1138
Query: 396 GACVGILGPP 405
VG GPP
Sbjct: 1139 RGPVGPSGPP 1148
Score = 33.1 bits (74), Expect = 0.61
Identities = 41/138 (29%), Positives = 49/138 (35%), Gaps = 21/138 (15%)
Query: 285 GVPG-RGGRSAPGMHARLARPLGAVVTGPDLG-------GPQGVGSAAPYWG----RGEV 332
G PG G R APG R P A G D GP G A + G +GEV
Sbjct: 294 GAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEV 353
Query: 333 SVGPAHQPF---LPPEAPPPIP----ACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQR 385
GPA P P + P P P P +G G+ G G+ G P +
Sbjct: 354 --GPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMG 411
Query: 386 ARQTPEAHPPGACVGILG 403
AR P G+ G
Sbjct: 412 ARGPPGPAGANGAPGLRG 429
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 48.5 bits (114), Expect = 1e-05
Identities = 108/423 (25%), Positives = 145/423 (34%), Gaps = 68/423 (16%)
Query: 125 PRPQHKVR---GYRYLEDNSEESDAEDEHGDGAEEEAPPA-GPRPG-PEPA---GLGRRP 176
P+ + KV G R+ + + G E+ P + GP P EPA L R P
Sbjct: 1026 PKSEDKVSENGGLRFPRNTERPPETGPWRAPGPWEKTPESWGPAPTIGEPAPETSLERAP 1085
Query: 177 CPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQ-GFENTAETLRALSTRPSAGAGSGSSCDP 235
P +G E P G + P G + G E A P AG S
Sbjct: 1086 APSAVVSSRNGGETAP--GPLGPAPKNGTLEPGTERRAPETGGAPRAPGAGRLDLGSGGR 1143
Query: 236 APLQILPAVGRGPGPRVTA----LCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGG 291
AP+ A G GPG V A + + PQ PP + + + P P
Sbjct: 1144 APVGTGTAPGGGPGSGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVAP 1203
Query: 292 RSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAH------------- 338
PG A +R G D G P P R + +GP
Sbjct: 1204 EGEPG--APDSRAGGDTALSGD-GDPPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRL 1260
Query: 339 QPFLPPEAPPPIPACLCQPQPGEGS-GGAAGRDRGGCDGVAGPPWV------QRARQTPE 391
LPP P P + P EG+ GAAG + GG G GP + + E
Sbjct: 1261 SLALPPLTLTPFPGPGPRRPPWEGADAGAAGGEAGGA-GAPGPAEEDGEDEDEDEEEDEE 1319
Query: 392 AHPPGACVGILGP--------PATIPASDRVYFRATVGLSCDAHEKQAGGGADP------ 437
A PGA G GP P + ++D R GL K G +P
Sbjct: 1320 AAAPGAAAGPRGPGRARAAPVPVVVSSADADAARPLRGLL-----KSPRGADEPEDSELE 1374
Query: 438 LQGLKVPFLHPLLLWPEERDTPAMKSSERLGEDKWGPWEGHGAPSCTPAGPGLAHTIPHS 497
+ V F + ++ +++TP + S + P EG PS PA P T PH
Sbjct: 1375 RKRKMVSFHGDVTVYLFDQETPTNELSVQ------APPEGDTDPSTPPAPP----TPPHP 1424
Query: 498 PQP 500
P
Sbjct: 1425 ATP 1427
Score = 32.3 bits (72), Expect = 1.0
Identities = 69/276 (25%), Positives = 89/276 (32%), Gaps = 47/276 (17%)
Query: 154 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFE--- 210
A E P P RP P + + G L G W+P G+ G
Sbjct: 601 APSEVPQLVSETWASPLFPAPRPFPAQSSASGS----FLLSG----WDPEGRGAGETLAG 652
Query: 211 NTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFL 270
+ AE L T P +P + ++G GP R C + + + L
Sbjct: 653 DPAEVLGERGTAPWVEEEEEEEEGSSPGEDSSSLGGGPSRRGPLPCPLCSREGACSCLPL 712
Query: 271 QK------MSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAA 324
++ L CP+ R+ G A L P+ + P +G+AA
Sbjct: 713 ERGDAVAGWGGHPALGCPHPPEDDSSLRAERGSLADL--PMAPPASAPPEFLDPLMGAAA 770
Query: 325 P-YWGRGEVSVGPAHQPFLPPEAPPPIPAC--------------LCQPQPGEGSGG---- 365
P Y GRG PA P PP P PA L P P G G
Sbjct: 771 PQYPGRGPP---PAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETE 827
Query: 366 ----AAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 397
G GG G A V R R PE PGA
Sbjct: 828 TPFSPEGAFPGG--GAAEEEGVPRPRAPPEPPDPGA 861
Score = 29.3 bits (64), Expect = 8.7
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 15/136 (11%)
Query: 117 VAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGR-R 175
VA P + P K Y + + G AEEE P PR PEP G R
Sbjct: 805 VASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEEEGVPR-PRAPPEPPDPGAPR 863
Query: 176 PCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDP 235
P P GP E P E +LR TR G ++ +
Sbjct: 864 PPPDPGPLPLPGPREKP---------TFVVQVSTEQLLMSLREDVTRNLLGEKGATARET 914
Query: 236 APLQILPAVGRGPGPR 251
P + GRGPG R
Sbjct: 915 GPRK----AGRGPGNR 926
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 47.8 bits (112), Expect = 2e-05
Identities = 71/277 (25%), Positives = 96/277 (34%), Gaps = 35/277 (12%)
Query: 144 SDAEDEHGDGAEEEAPP--AGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPW- 200
S A++ + D ++EE+P AG GP P G + P + GP P QGG +P
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGP---PPQGGNKPQG 70
Query: 201 -EPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSY 259
P G+ QG + R+ + P G P P G+ GP +
Sbjct: 71 PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG--GNR 128
Query: 260 PQGPPRATIFLQKMSNKEILYCPY------WGVPGRGGRSAPGMHARLARPLGAVVTG-- 311
PQGPP + P G P +GG G +P G G
Sbjct: 129 PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGK 188
Query: 312 -----PDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPP-------EAPPPIPACLCQPQP 359
P G PQG P + S P +P PP + PPP P +PQ
Sbjct: 189 KPQGPPPPGKPQG---PPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPG---KPQG 242
Query: 360 GEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPG 396
GG + GPP ++ PPG
Sbjct: 243 PPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPG 279
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 47.8 bits (112), Expect = 2e-05
Identities = 95/389 (24%), Positives = 126/389 (32%), Gaps = 63/389 (16%)
Query: 158 APPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVE--PWEPLGQAQGFENTAET 215
+P P P P G P + +G P PL G P L +G T +
Sbjct: 1018 SPKGSPAATPFPKGASTPPAATPPSPKGS-PAATPLPKGAPTTPAATLPSPKGGPATP-S 1075
Query: 216 LRALSTRPSAGAGS--GSSCDPAPLQI-LPAVGRGPGPRVTALCTSYPQGPPRATIFLQK 272
L+ T P+A S G P+P +P P P+ L T +G P T
Sbjct: 1076 LKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPK-GGLATPPHKGAP-TTPAATP 1133
Query: 273 MSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEV 332
S K L P P +G + P A P G + T P G P + P G
Sbjct: 1134 PSPKGGLATP----PPKGAPTTPA--ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLA 1187
Query: 333 SVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEA 392
+ P P P PP L P P A G+A P + A TP A
Sbjct: 1188 TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS-PKGAPTTPAA 1246
Query: 393 HPPGACVGILGPP----ATIPASDRVYFRATVGLSCDAHE-----------KQAGG---- 433
PP G PP T PA+ + GL+ H+ GG
Sbjct: 1247 TPPSPKGGPATPPPKGAPTPPAATPPSLKG--GLATPPHKGAPNPAVVTPPSPKGGPATS 1304
Query: 434 --------------------GADPLQGLKVPFLHPLLLWPEERDTPAMKS---SERLGED 470
G P +G P P + P + TP + + S + G
Sbjct: 1305 PPKGAPTPPAATPPSPKGSPGTPPPKGAPTP---PAVTPPSPKGTPTLPATTPSSKGGPT 1361
Query: 471 KWGPWEGHGAPSCTPAGPGLAHTIPHSPQ 499
EG P+ TP+ G P SP+
Sbjct: 1362 TPSSKEGPTPPAATPSHKGGPAMTPPSPK 1390
Score = 47.0 bits (110), Expect = 4e-05
Identities = 62/252 (24%), Positives = 80/252 (31%), Gaps = 21/252 (8%)
Query: 160 PAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL 219
PA P P P P + P+ P P P G
Sbjct: 931 PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPA 990
Query: 220 STRPSAGAGSGSSCD---PAPLQILPAVGRGPGPRVTALCTSYPQG---PPRATIFLQKM 273
+T PS G + P P + P P P+ + T +P+G PP AT K
Sbjct: 991 ATPPSPKGGPATPSPKGAPTPPAVTP-----PSPKGSPAATPFPKGASTPPAATPPSPKG 1045
Query: 274 SNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVS 333
S P +G + P A L P G T G P + P G +
Sbjct: 1046 S-------PAATPLPKGAPTTPA--ATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096
Query: 334 VGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAH 393
P P +PP A PP P P +G+ G P + A TP A
Sbjct: 1097 PSPKGAP-MPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAAT 1155
Query: 394 PPGACVGILGPP 405
PP G+ PP
Sbjct: 1156 PPSPKGGLATPP 1167
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 47.4 bits (111), Expect = 3e-05
Identities = 62/243 (25%), Positives = 76/243 (31%), Gaps = 29/243 (11%)
Query: 128 QHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDG 187
+H R L + S A+ H A+ PP+ P P G G P G
Sbjct: 186 RHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPP--GSF 243
Query: 188 PEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRG 247
P P G + P P + + GAG P P
Sbjct: 244 PPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPH 303
Query: 248 PGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGG----RSAPGMHARLAR 303
PG L P G L P+ G PG GG R PGM
Sbjct: 304 PGMSQMQLAHHGPHG----------------LGHPHAGPPGSGGQPPPRPPPGMPHPGPP 347
Query: 304 PLGAVVTGPDLGGPQG-VGSAAPYWGRGEVSVGPAHQPFLPPEAPP------PIPACLCQ 356
P+G GP G P G G P+ RG + P H PP PP P+P
Sbjct: 348 PMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPT 407
Query: 357 PQP 359
P+P
Sbjct: 408 PRP 410
Score = 30.8 bits (68), Expect = 3.0
Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 159 PPAGPRPGPEPAGLGRRPCPYEQAQRGDGP-EEHPLQGGVEPWEPLGQAQGFENTAETLR 217
PP P PGP P G+ R P+ GP H ++G PL G+
Sbjct: 338 PPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGP----PPLMPPHGYTGPPRP-- 391
Query: 218 ALSTRPSAGAGSGSSCDPAPLQILPAVGRGP 248
P G G P P P RGP
Sbjct: 392 -----PPYGYQRGPLPPPRPTPRPPVPPRGP 417
>gi|24308352 DMRT-like family B with proline-rich C-terminal, 1
[Homo sapiens]
Length = 342
Score = 47.0 bits (110), Expect = 4e-05
Identities = 64/210 (30%), Positives = 76/210 (36%), Gaps = 40/210 (19%)
Query: 159 PPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQ---GGVEPWEPLGQAQGFENTAET 215
P PGPE C +EQ RG P LQ GG EP E A
Sbjct: 103 PSGDADPGPEGRAAA---CFFEQPPRGRNPGPRALQPVLGGRSHVEPS------ERAAVA 153
Query: 216 LRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSN 275
+ +L+ P +GS P PL + + PGP T P RA
Sbjct: 154 MPSLAGPPFGAEAAGSGY-PGPLDLRRPMRTVPGPLFTDFVRPLNINPDRAL-------- 204
Query: 276 KEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVG--SAAPYWGRGEVS 333
G GG S MH PLG + P + QG S + Y G G VS
Sbjct: 205 ---------GPEYPGGSS---MHPYCPFPLGYLDAPPGVPLQQGFRHVSRSQYQGGGLVS 252
Query: 334 -VGPAHQP--FLPPEAP--PPIPACLCQPQ 358
G QP +LPP P PP+P QPQ
Sbjct: 253 EPGGDFQPSYYLPPPPPPLPPLPPLPPQPQ 282
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 46.6 bits (109), Expect = 5e-05
Identities = 72/263 (27%), Positives = 87/263 (33%), Gaps = 51/263 (19%)
Query: 151 GDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFE 210
G G + P GP PG P P Q Q+ P++ P Q P +P Q +
Sbjct: 37 GMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQP-PPHQPPPHPQPHQ 95
Query: 211 ---------NTAETLRALSTRPSAGAGSG----SSCDPA--PLQILPAVGRGPGPRVTA- 254
++++ + A P+ G GS SS PA P P G GPGP T
Sbjct: 96 QQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPP-GSGPGPTPTPP 154
Query: 255 -LCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPD 313
TS P G P T P G A P A V GP
Sbjct: 155 PAVTSAPPGAPPPT-------------------PPSSGVPTTPPQAGGPPPPPAAVPGPG 195
Query: 314 LGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGG 373
G QG G P G+ P P L P P P G G RGG
Sbjct: 196 PGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKP-----PHRG------GGEPRGG 244
Query: 374 CDGVAGPPWVQRARQTPEAHPPG 396
PP+ Q+ Q P PG
Sbjct: 245 RQ--HHPPYHQQHHQGPPPGGPG 265
Score = 30.8 bits (68), Expect = 3.0
Identities = 43/172 (25%), Positives = 49/172 (28%), Gaps = 27/172 (15%)
Query: 336 PAHQPFLPP-------EAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAGPPWVQRARQ 388
P HQP PP + PPP P +P +G G A G + PP
Sbjct: 83 PPHQP--PPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSG 140
Query: 389 TPEAHPPGACVGILGPPATIPASDRVYFRATVGLSCDAHEKQAGGGADPLQGLKVPFLHP 448
P PG PPA A QAGG P + P
Sbjct: 141 APPGSGPGPTP--TPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGP---- 194
Query: 449 LLLWPEERDTPAMKSSERLGEDKWGPWEGHGAPSCTPAGPGLAHTIPHSPQP 500
P K G K G G P GPGL+ H P
Sbjct: 195 ---------GPGPKQGPGPGGPKGGKMPGGPKPG---GGPGLSTPGGHPKPP 234
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 46.2 bits (108), Expect = 7e-05
Identities = 74/276 (26%), Positives = 96/276 (34%), Gaps = 46/276 (16%)
Query: 151 GDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVE-------PWEPL 203
G+ + PP G G P G + P + + +GP P QGG + P +P
Sbjct: 44 GNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGP---PPQGGNQSQGPPPRPGKPE 100
Query: 204 GQAQGFENTAETLRALSTRPSA--GAGSGSSCDPAPLQILPA--------VGRGPGPRVT 253
GQ N ++ +P G S P P P +GP PR
Sbjct: 101 GQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR-- 158
Query: 254 ALCTSYPQGPPRATIFLQKMSNKEILYCPY----WGVPGRGGRSAPGMHARLARPLGAVV 309
P+GPP + N+ P+ G P +GG + G R +P G
Sbjct: 159 ---PGKPEGPP------PQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGP-- 207
Query: 310 TGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGR 369
P GG Q G P G+ E GP Q P+ PPP P P P EG+
Sbjct: 208 --PPQGGNQSQG-PPPRPGKPE---GPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPP 261
Query: 370 DRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPP 405
G GPP Q P P G G PP
Sbjct: 262 PPG---RPQGPPPPGGNPQQPLPPPAGKPQGPPPPP 294
Score = 45.8 bits (107), Expect = 9e-05
Identities = 70/257 (27%), Positives = 92/257 (35%), Gaps = 48/257 (18%)
Query: 153 GAEEEAPPAGPRPG-PEPAGLGRRPCPYEQAQ----RGDGPEEHPLQGGVE-------PW 200
G + + PP PRPG PE G+ P Q+Q R PE P QGG + P
Sbjct: 86 GNQSQGPP--PRPGKPE----GQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 139
Query: 201 EPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYP 260
+P G N ++ +P G + P P G+ GP +
Sbjct: 140 KPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPP---PHPGKPEGPPPQG--GNQS 194
Query: 261 QGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGG--PQ 318
QGPP + E G P +GG + G R +P G P GG PQ
Sbjct: 195 QGPP------PRPGKPE-------GPPPQGGNQSQGPPPRPGKPEGP----PSQGGNKPQ 237
Query: 319 GVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVA 378
G P+ G+ + GP Q P+ PPP P PG G G
Sbjct: 238 G---PPPHPGKPQ---GPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPP 291
Query: 379 GPPWVQRARQTPEAHPP 395
PP R + P+ PP
Sbjct: 292 PPPQGGRPHRPPQGQPP 308
Score = 30.0 bits (66), Expect = 5.1
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 149 EHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQ 205
+ G+ + PP P+ P P G ++P P A + GP P QGG P GQ
Sbjct: 252 QEGNKPQRPPPPGRPQGPPPPGGNPQQPLP-PPAGKPQGPPPPP-QGGRPHRPPQGQ 306
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 45.8 bits (107), Expect = 9e-05
Identities = 85/309 (27%), Positives = 112/309 (36%), Gaps = 54/309 (17%)
Query: 165 PGPEPAGLGRRPCPYE-QAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRP 223
PGP A G P P + +A+ + P E+ L+ G+E L A G N +L P
Sbjct: 230 PGPAQAFPGHLPLPTKVEAKAPETPSEN-LRTGLE----LAPAPGRVNVVSP--SLEVAP 282
Query: 224 SAGAGSGSSC-DPAPLQILPAVGRGPGPR--------VTALCT-SYPQGPPRATIFLQKM 273
AG G+ SS DP PL+ + GPGP+ A T S + PPR +I +Q+M
Sbjct: 283 GAGQGASSSRPDPEPLEEGTRLTPGPGPQCPGPPGLPAQARATHSGGETPPRISIHIQEM 342
Query: 274 SNK-EILY-------------CPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQG 319
E+L P PG+ G G R L A T P P+G
Sbjct: 343 DTPGEMLMTGRGSLGPTLTTEAPAAAQPGKQGPPGTG------RCLQAPGTEPGEQTPEG 396
Query: 320 VGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRDRGGCDGVAG 379
+P A + P P+ L + + GA G +G G
Sbjct: 397 ARELSPLQESSSPGGVKAEEEQRAGAEPGTRPS-LARSDDNDHEVGALGLQQGKSPGAGN 455
Query: 380 PPWVQ----RARQTPEA---HPPGACVGIL----GPPATIPASDRVY----FRATVGLSC 424
P Q RA EA PPGA G + P P RV + G
Sbjct: 456 PEPEQDCAARAPVRAEAVRRMPPGAEAGSVVLDDSPAPPAPFEHRVVSVKETSISAGYEV 515
Query: 425 DAHEKQAGG 433
HE GG
Sbjct: 516 CQHEVLGGG 524
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 119 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 173
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 174 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 231
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 232 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 290
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 291 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 344
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 345 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 397
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 119 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 173
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 174 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 231
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 232 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 290
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 291 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 344
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 345 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 397
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 119 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 173
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 174 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 231
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 232 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 290
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 291 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 344
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 345 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 397
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 119 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 173
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 174 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 231
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 232 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 290
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 291 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 344
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 345 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 397
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 119 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 173
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 174 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 231
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 232 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 290
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 291 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 344
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 345 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 397
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 119 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 173
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 174 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 231
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 232 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 290
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 291 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 344
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 345 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 397
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/299 (26%), Positives = 102/299 (34%), Gaps = 45/299 (15%)
Query: 119 PPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEA-----PPAGPRPGPEPAGLG 173
PP P P GY + E H G ++ G R G AG+G
Sbjct: 49 PPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH-AGMG 107
Query: 174 RRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL--STRPSAGAGSGS 231
P P +Q +G +P PLG G E+ + + A S+ P +G G
Sbjct: 108 PPPSPMDQHSQG-----YP--------SPLG---GSEHASSPVPASGPSSGPQMSSGPGG 151
Query: 232 S-CDPAPLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRG 290
+ D A Q L RGP P RA I KM + + + +G
Sbjct: 152 APLDGADPQALGQQNRGPTP-----FNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQG 206
Query: 291 GRSAPGMHARLAR--PLGAVVTGPDLG---GP-QGVGSAAPYWGRGEVSVGPAHQPFLPP 344
R PGM ++ P TGP G GP G G A P + R GP P P
Sbjct: 207 KRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPS 266
Query: 345 EAPPPIPACLCQPQPG------EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGA 397
PP +P QP G EG A + P R P A PP A
Sbjct: 267 GVPPGMPG---QPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAA 322
>gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens]
Length = 457
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 3 GAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKERQ 62
GA H+ L W P H+ + V + LWGV A+ T + L G+L+E + +
Sbjct: 326 GAVTHVSCMIALLLWRPRA---DHLAVFFVFSGLWGVADAVWQTQNNALYGVLFE--KSK 380
Query: 63 DFIFTIYHWWQAVAIFTVYLGSSLHM--KAKLAMLLVTLVAAAVSY 106
+ F Y W+A+ F + G S+ + KL +LL L V+Y
Sbjct: 381 EAAFANYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTMVAY 425
>gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens]
Length = 415
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 3 GAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKERQ 62
GA H+ L W P H+ + V + LWGV A+ T + L G+L+E + +
Sbjct: 284 GAVTHVSCMIALLLWRPRA---DHLAVFFVFSGLWGVADAVWQTQNNALYGVLFE--KSK 338
Query: 63 DFIFTIYHWWQAVAIFTVYLGSSLHM--KAKLAMLLVTLVAAAVSY 106
+ F Y W+A+ F + G S+ + KL +LL L V+Y
Sbjct: 339 EAAFANYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTMVAY 383
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 44.7 bits (104), Expect = 2e-04
Identities = 85/288 (29%), Positives = 101/288 (35%), Gaps = 66/288 (22%)
Query: 152 DGAEEEAPPAGPRPGP-------EPAGLGRRPCPYEQAQRG-DGPE----EHPLQGGVEP 199
DGA+ +A PAGP+ P P +G R P E+ + G GP G P
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGP 333
Query: 200 WEPLGQA--QGFENTAETLRALSTRPSAGA-GSGSSCDPAPLQILPAVGRGPGPRVTALC 256
P G A GF A+ + AG G S P ++ P PGP A
Sbjct: 334 PGPTGPAGPPGFPG------AVGAKGEAGPQGPRGSEGPQGVRGEPGP---PGPAGAA-- 382
Query: 257 TSYPQGPPRATIFLQKMSNKEILYCPYWGVPG-RGGRSAPGMHARLARPLGAVVTGPD-L 314
P G P A G PG +G APG+ P +GP
Sbjct: 383 --GPAGNPGAD-----------------GQPGAKGANGAPGIAGAPGFPGARGPSGPQGP 423
Query: 315 GGPQGV----------GSAAPYWGRGE---VSV----GPAHQPFLPPEAPPPIPACLCQP 357
GGP G GS +GE V V GPA + P P L P
Sbjct: 424 GGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGP 483
Query: 358 QPGEGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPP 405
PGE GG R G DGVAGP R +P P G G P
Sbjct: 484 -PGE-RGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP 529
Score = 35.8 bits (81), Expect = 0.093
Identities = 77/283 (27%), Positives = 90/283 (31%), Gaps = 62/283 (21%)
Query: 152 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWE-----PLGQA 206
DG P GP P PAG P ++ + G P P + P G A
Sbjct: 760 DGVRGLTGPIGP---PGPAG-----APGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPA 811
Query: 207 QGFENT--AETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGPRVTALCTSYPQG-- 262
GF A+ P G + P P PA GP V A +G
Sbjct: 812 -GFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG--PAGPPGPIGNVGAPGAKGARGSA 868
Query: 263 -PPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGVG 321
PP AT G PG GR P + A P G GG G
Sbjct: 869 GPPGAT-----------------GFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG 911
Query: 322 SAAPYWGRGEVS----VGPAHQPFLP----PEAPPPIPACLCQPQPGEGSGGAAG----R 369
P GEV GPA + P P P P PQ G G G R
Sbjct: 912 ETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPG----PQGIAGQRGVVGLPGQR 967
Query: 370 DRGGCDGVAGPPWVQRARQTP-----EAHPPGAC--VGILGPP 405
G G+ GP + +Q P E PPG G+ GPP
Sbjct: 968 GERGFPGLPGPSG-EPGKQGPSGASGERGPPGPMGPPGLAGPP 1009
Score = 35.4 bits (80), Expect = 0.12
Identities = 42/134 (31%), Positives = 51/134 (38%), Gaps = 18/134 (13%)
Query: 285 GVPGRGGRSAPGMHARLARPLGAVVTGPDLGGPQGV-GSAAPYWGRGEVSV--------- 334
G G G + P A P+GA GP GPQG G +G+ +
Sbjct: 1061 GKSGDRGETGPAGPAGPVGPVGA--RGP--AGPQGPRGDKGETGEQGDRGIKGHRGFSGL 1116
Query: 335 -GPAHQPFLPPEAPPPIPACLCQPQPGEGSGGAAGRD-RGGCDGVAGPPWVQ-RARQTPE 391
GP P P E P + P+ GS GA G+D G G GPP + R
Sbjct: 1117 QGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGP 1176
Query: 392 AHPPGACVGILGPP 405
PPG G GPP
Sbjct: 1177 VGPPGP-PGPPGPP 1189
Score = 35.0 bits (79), Expect = 0.16
Identities = 73/250 (29%), Positives = 85/250 (34%), Gaps = 61/250 (24%)
Query: 160 PAGPRPGPEPAGLGRRPCPYEQAQRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRAL 219
P GP P P GLG P Q G +E GG+ P+G + R L
Sbjct: 143 PPGPPGPPGPPGLGGNFAP----QLSYGYDEKS-TGGISVPGPMGPSGP--------RGL 189
Query: 220 STRPSAGAGSGSSCDPA-PLQILPAVGRGPGPRVTALCTSYPQGPPRATIFLQKMSNKEI 278
P A G P P + P GPR P GPP + + E
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGE--PGASGPMGPR-------GPPGPPG-----KNGDDGEA 235
Query: 279 LYCPYWGVPGR-GGRSAPGMHARLARPLGAVVTGPDLGGPQGV-------GSAAPYWGRG 330
G PGR G R PG AR L P + G +G G A P
Sbjct: 236 ------GKPGRPGERGPPGPQG--ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP----- 282
Query: 331 EVSVGPAHQPFLPPEAPPP---IPACLCQPQPGEGSGGAAG-RDRGGCDGVAGPPWVQRA 386
GP +P P E P P L + G+ G AG R G G AGPP
Sbjct: 283 ---AGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPP----- 334
Query: 387 RQTPEAHPPG 396
T A PPG
Sbjct: 335 GPTGPAGPPG 344
Score = 33.1 bits (74), Expect = 0.61
Identities = 70/266 (26%), Positives = 89/266 (33%), Gaps = 44/266 (16%)
Query: 146 AEDEHGD-GAEEEAPPAGPR-PGPEPAGLGRRPCPYEQAQRGD----GPEEHP-LQGGVE 198
A+ E GD GA+ +A P GP P P +G P + RG G P G V
Sbjct: 825 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884
Query: 199 PWEPLGQA--QGFENTAETLRALSTRPSAGAGSGSSCDPA--PLQILPAVGRGPGPRVTA 254
P P G A G A G G PA P ++ P GP +
Sbjct: 885 PPGPSGNAGPPGPPGPAGK--------EGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS 936
Query: 255 LCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPG-RGGRSAPGMHARLARPLGAVVTG-- 311
P G P T Q ++ + + G+PG RG R PG+ P +G
Sbjct: 937 PGADGPAGAP-GTPGPQGIAGQRGVV----GLPGQRGERGFPGLPGPSGEPGKQGPSGAS 991
Query: 312 -----------PDLGGP------QGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACL 354
P L GP +G A GR + P PP P
Sbjct: 992 GERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
Query: 355 CQPQPGEGSGGAAGRDRGGCDGVAGP 380
P P +G + R G G AGP
Sbjct: 1052 GAPGPVGPAGKSGDRGETGPAGPAGP 1077
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 43.9 bits (102), Expect = 3e-04
Identities = 56/181 (30%), Positives = 68/181 (37%), Gaps = 34/181 (18%)
Query: 242 PAVGRG-PGPRVTALCTSYPQGPPRATIFLQKMSNKEILYCPYWGVPGRGGRSAPGMHAR 300
P G+G PGP PQ PP A + P +P R G PG A
Sbjct: 5 PFFGQGRPGPPP-------PQPPPPAPFGCPPPPLPSPAFPP--PLPQRPG-PFPGASAP 54
Query: 301 LARPLGAVVTGPDLGGPQGVGSAAPYWGRGEVSVGPAHQPFLPPEAPPPIPACLCQPQPG 360
+P A+ +G G A ++ P PP PPP P C+P PG
Sbjct: 55 FLQPPLALQPRASAEASRGGGGAGAFY------------PVPPPPLPPPPPQ--CRPFPG 100
Query: 361 EGSGGAAGRDRGGCDGVAGPPWVQRARQTPEAHPPGACVGILGPPATIPASDRVYFRATV 420
+G R R G GPPW R PEA PP A +LG A DR + A
Sbjct: 101 TDAG---ERPRPPPPG-PGPPWSPR---WPEAPPPPA--DVLGDAALQRLRDRQWLEAVF 151
Query: 421 G 421
G
Sbjct: 152 G 152
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 43.5 bits (101), Expect = 4e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 114 RRGVAPPQPRIPRPQ-HKVRGYRYLEDN---SEESDAEDEHGDGAEEEAPPAGPRPGPEP 169
R+G AP P P K + + ED+ SEESD+E+E A +A P+G P
Sbjct: 306 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEE----APAQAKPSGKAPQVRA 361
Query: 170 AGLGRRPCPYEQA----QRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSA 225
A + P + A R GP +Q G + + ++ ++ E L A++
Sbjct: 362 ASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVK 421
Query: 226 GAGSGSSCDPAPLQILPAVGRGPGP 250
G PA + +G+G GP
Sbjct: 422 PLGKSPQVKPASTMGMGPLGKGAGP 446
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 43.5 bits (101), Expect = 4e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 114 RRGVAPPQPRIPRPQ-HKVRGYRYLEDN---SEESDAEDEHGDGAEEEAPPAGPRPGPEP 169
R+G AP P P K + + ED+ SEESD+E+E A +A P+G P
Sbjct: 383 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEE----APAQAKPSGKAPQVRA 438
Query: 170 AGLGRRPCPYEQA----QRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSA 225
A + P + A R GP +Q G + + ++ ++ E L A++
Sbjct: 439 ASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVK 498
Query: 226 GAGSGSSCDPAPLQILPAVGRGPGP 250
G PA + +G+G GP
Sbjct: 499 PLGKSPQVKPASTMGMGPLGKGAGP 523
Score = 30.0 bits (66), Expect = 5.1
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 41/160 (25%)
Query: 112 KLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPP----------- 160
+++ G PP R +P+ EES++ +E G +EEEAP
Sbjct: 251 QVKGGALPPAKRAKKPE-------------EESESSEE-GSESEEEAPAGTRSQVKASEK 296
Query: 161 -----AGPRPGPEPAGLGRRPCPYEQA-----QRGDGPEEHPLQGGVEPWEPLGQAQGFE 210
A P G G P P +A Q G E + E ++ E
Sbjct: 297 ILQVRAASAPAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSE------ESSDSE 350
Query: 211 NTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGP 250
+AL ++G S AP + P G P P
Sbjct: 351 EETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 390
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 43.5 bits (101), Expect = 4e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 114 RRGVAPPQPRIPRPQ-HKVRGYRYLEDN---SEESDAEDEHGDGAEEEAPPAGPRPGPEP 169
R+G AP P P K + + ED+ SEESD+E+E A +A P+G P
Sbjct: 383 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEE----APAQAKPSGKAPQVRA 438
Query: 170 AGLGRRPCPYEQA----QRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSA 225
A + P + A R GP +Q G + + ++ ++ E L A++
Sbjct: 439 ASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVK 498
Query: 226 GAGSGSSCDPAPLQILPAVGRGPGP 250
G PA + +G+G GP
Sbjct: 499 PLGKSPQVKPASTMGMGPLGKGAGP 523
Score = 30.0 bits (66), Expect = 5.1
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 41/160 (25%)
Query: 112 KLRRGVAPPQPRIPRPQHKVRGYRYLEDNSEESDAEDEHGDGAEEEAPP----------- 160
+++ G PP R +P+ EES++ +E G +EEEAP
Sbjct: 251 QVKGGALPPAKRAKKPE-------------EESESSEE-GSESEEEAPAGTRSQVKASEK 296
Query: 161 -----AGPRPGPEPAGLGRRPCPYEQA-----QRGDGPEEHPLQGGVEPWEPLGQAQGFE 210
A P G G P P +A Q G E + E ++ E
Sbjct: 297 ILQVRAASAPAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSE------ESSDSE 350
Query: 211 NTAETLRALSTRPSAGAGSGSSCDPAPLQILPAVGRGPGP 250
+AL ++G S AP + P G P P
Sbjct: 351 EETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAP 390
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 43.5 bits (101), Expect = 4e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 114 RRGVAPPQPRIPRPQ-HKVRGYRYLEDN---SEESDAEDEHGDGAEEEAPPAGPRPGPEP 169
R+G AP P P K + + ED+ SEESD+E+E A +A P+G P
Sbjct: 306 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEE----APAQAKPSGKAPQVRA 361
Query: 170 AGLGRRPCPYEQA----QRGDGPEEHPLQGGVEPWEPLGQAQGFENTAETLRALSTRPSA 225
A + P + A R GP +Q G + + ++ ++ E L A++
Sbjct: 362 ASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVK 421
Query: 226 GAGSGSSCDPAPLQILPAVGRGPGP 250
G PA + +G+G GP
Sbjct: 422 PLGKSPQVKPASTMGMGPLGKGAGP 446
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.139 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,085,317
Number of Sequences: 37866
Number of extensions: 1892717
Number of successful extensions: 14242
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 714
Number of HSP's that attempted gapping in prelim test: 11892
Number of HSP's gapped (non-prelim): 2774
length of query: 503
length of database: 18,247,518
effective HSP length: 107
effective length of query: 396
effective length of database: 14,195,856
effective search space: 5621558976
effective search space used: 5621558976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.