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Search of human proteins with 239744397
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744397 PREDICTED: hypothetical protein LOC100130348 [Homo
sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744397 PREDICTED: hypothetical protein LOC100130348 [Homo ... 337 2e-93
gi|39930610 sodium channel, voltage-gated, type I, beta isoform ... 35 0.033
gi|4501987 afamin precursor [Homo sapiens] 30 0.81
gi|38348402 transmembrane protein 110 [Homo sapiens] 28 2.3
gi|27777675 vomeronasal 1 receptor 5 [Homo sapiens] 28 3.1
gi|190341097 rhomboid family 1 [Homo sapiens] 28 4.0
gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens] 27 5.2
gi|21735415 centromere protein B [Homo sapiens] 27 6.8
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 27 8.9
gi|239747060 PREDICTED: hypothetical protein XP_002344267 [Homo ... 27 8.9
gi|239747050 PREDICTED: hypothetical protein XP_002344262 [Homo ... 27 8.9
gi|239747046 PREDICTED: hypothetical protein XP_002344260 [Homo ... 27 8.9
gi|239747040 PREDICTED: hypothetical protein XP_002344257 [Homo ... 27 8.9
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 27 8.9
>gi|239744397 PREDICTED: hypothetical protein LOC100130348 [Homo
sapiens]
Length = 153
Score = 337 bits (865), Expect = 2e-93
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MWLQDRIATFFFPKGMMLTTAALMLFFLHLGIFIRDVHNFCITYHYDHMSFHYTVVLMFS 60
MWLQDRIATFFFPKGMMLTTAALMLFFLHLGIFIRDVHNFCITYHYDHMSFHYTVVLMFS
Sbjct: 1 MWLQDRIATFFFPKGMMLTTAALMLFFLHLGIFIRDVHNFCITYHYDHMSFHYTVVLMFS 60
Query: 61 QVISICWAAMGSLYAEMTENKYVCFSALTILSEWQEWEGARGSGELWNPEMWQGVAREGY 120
QVISICWAAMGSLYAEMTENKYVCFSALTILSEWQEWEGARGSGELWNPEMWQGVAREGY
Sbjct: 61 QVISICWAAMGSLYAEMTENKYVCFSALTILSEWQEWEGARGSGELWNPEMWQGVAREGY 120
Query: 121 WGSWGALSPAQCSTEPCSSTACPWSFWPSKPTS 153
WGSWGALSPAQCSTEPCSSTACPWSFWPSKPTS
Sbjct: 121 WGSWGALSPAQCSTEPCSSTACPWSFWPSKPTS 153
>gi|39930610 sodium channel, voltage-gated, type I, beta isoform b
[Homo sapiens]
Length = 268
Score = 34.7 bits (78), Expect = 0.033
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 110 EMWQGVAREGYWGSWGALSPAQCSTEPCSSTACPWSFWP 148
+ WQ V R G+ +W A P Q + SS +CP WP
Sbjct: 169 DRWQAVDRTGWLCAWPANRPQQRAEGEGSSPSCPLQLWP 207
>gi|4501987 afamin precursor [Homo sapiens]
Length = 599
Score = 30.0 bits (66), Expect = 0.81
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 14 KGMMLTTAALMLFFLHLGIFI----RDVHNFCITYHYDHMSFHYTVVLMFSQVI-SICWA 68
K + LT LFFL + + RD+ NF T + + Y ++ F+Q + +
Sbjct: 2 KLLKLTGFIFFLFFLTESLTLPTQPRDIENFNSTQKFIEDNIEYITIIAFAQYVQEATFE 61
Query: 69 AMGSLYAEMTENKYVCFSALTI 90
M L +M E K C + T+
Sbjct: 62 EMEKLVKDMVEYKDRCMADKTL 83
>gi|38348402 transmembrane protein 110 [Homo sapiens]
Length = 294
Score = 28.5 bits (62), Expect = 2.3
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 82 YVCFSALTILSEWQEWEGARGSGELWNP 109
YV A+++L EWQ+WE R GE +P
Sbjct: 119 YVGVRAVSVLVEWQQWESLR-FGEYGDP 145
>gi|27777675 vomeronasal 1 receptor 5 [Homo sapiens]
Length = 357
Score = 28.1 bits (61), Expect = 3.1
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 7 IATFFFPKGMMLTTAALMLFFLHLGIFIRDVHNFCITYHYDHMSFHYTVVLMFSQVISIC 66
I FF+P+ +A +L H+ F+ + I H+S + ++L+F+Q I +
Sbjct: 45 IQIFFYPQASFGISANTILLLFHIFTFVFSHRSKSIDMIISHLSLIH-ILLLFTQAILVS 103
Query: 67 WAAMGS 72
GS
Sbjct: 104 LDFFGS 109
>gi|190341097 rhomboid family 1 [Homo sapiens]
Length = 855
Score = 27.7 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 131 QCSTEPCSSTACPWSFWPSKPTS 153
Q S E CSST W WP P++
Sbjct: 512 QTSEEECSSTLAVWVKWPIHPSA 534
>gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens]
Length = 454
Score = 27.3 bits (59), Expect = 5.2
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 44 YHYDHMSFHYTVVLMFSQVISICWAAMGSLYAEMTENKYVCFSAL---TILSEW---QEW 97
Y +D S+ V+ ++ ++ G ++A + +N+Y+ L +++S W +
Sbjct: 348 YQWDFASYDILRVIKTPEIANLALLGFGDIFALLFDNRYLYIMDLRTESLISRWPLPEYR 407
Query: 98 EGARGSGELWNPEMW 112
+ RGS L W
Sbjct: 408 KSKRGSSFLAGEASW 422
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 26.9 bits (58), Expect = 6.8
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 92 SEWQEWEGARGSGELWNPEMW-QGVAREG-YWGSWGALSPAQCST 134
S+ +E E S E E W QGV G +G++GA AQC T
Sbjct: 456 SDEEEEEDEESSSEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPT 500
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 26.6 bits (57), Expect = 8.9
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 97 WEGARGSGELWNPEMWQGVAREGYWGSWGALS 128
W GA G+G + + W GV + GSW S
Sbjct: 1370 WAGA-GAGNMSSVSYWAGVVDQAGGGSWAGTS 1400
>gi|239747060 PREDICTED: hypothetical protein XP_002344267 [Homo
sapiens]
Length = 97
Score = 26.6 bits (57), Expect = 8.9
Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 96 EWEGARGSGELWNPEMWQGVAREGYWGSWGALSPAQCSTEPCSSTACPWSFW 147
EW G G WN W G+ G W + C CP W
Sbjct: 50 EWNGMSWDGIKWNDIKWNGIECNGM--LWNGME--------CIGMECPLMEW 91
>gi|239747050 PREDICTED: hypothetical protein XP_002344262 [Homo
sapiens]
Length = 97
Score = 26.6 bits (57), Expect = 8.9
Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 96 EWEGARGSGELWNPEMWQGVAREGYWGSWGALSPAQCSTEPCSSTACPWSFW 147
EW G G WN W G+ G W + C CP W
Sbjct: 50 EWNGMSWDGIKWNDIKWNGIECNGM--LWNGME--------CIGMECPLMEW 91
>gi|239747046 PREDICTED: hypothetical protein XP_002344260 [Homo
sapiens]
Length = 97
Score = 26.6 bits (57), Expect = 8.9
Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 96 EWEGARGSGELWNPEMWQGVAREGYWGSWGALSPAQCSTEPCSSTACPWSFW 147
EW G G WN W G+ G W + C CP W
Sbjct: 50 EWNGMSWDGIKWNDIKWNGIECNGM--LWNGME--------CIGMECPLMEW 91
>gi|239747040 PREDICTED: hypothetical protein XP_002344257 [Homo
sapiens]
Length = 97
Score = 26.6 bits (57), Expect = 8.9
Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 96 EWEGARGSGELWNPEMWQGVAREGYWGSWGALSPAQCSTEPCSSTACPWSFW 147
EW G G WN W G+ G W + C CP W
Sbjct: 50 EWNGMSWDGIKWNDIKWNGIECNGM--LWNGME--------CIGMECPLMEW 91
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 26.6 bits (57), Expect = 8.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 97 WEGARGSGELWNPEMWQGVAREGYWGSWGALSPAQCSTEP 136
W+GA SGE P WQG E W + +P S +P
Sbjct: 261 WQGA-SSGEAAGPPGWQGCPDE----PWPSATPCGPSVQP 295
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.135 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,252,644
Number of Sequences: 37866
Number of extensions: 257962
Number of successful extensions: 1028
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 21
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.