Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239744380
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744380 PREDICTED: hypothetical protein XP_002343131 [Homo
sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755565 PREDICTED: hypothetical protein [Homo sapiens] 535 e-152
gi|239750071 PREDICTED: hypothetical protein XP_002347270 [Homo ... 535 e-152
gi|239744380 PREDICTED: hypothetical protein XP_002343131 [Homo ... 535 e-152
gi|169162264 PREDICTED: similar to hCG1996527 [Homo sapiens] 32 0.71
gi|239747467 PREDICTED: similar to hCG1996527 [Homo sapiens] 32 0.71
gi|239741341 PREDICTED: similar to hCG1996527 [Homo sapiens] 32 0.71
gi|153070260 myristoylated alanine-rich protein kinase C substra... 30 1.6
gi|124244056 family with sequence similarity 123B [Homo sapiens] 29 3.5
gi|88900495 HCF-binding transcription factor Zhangfei [Homo sapi... 29 3.5
gi|150417978 platelet glycoprotein Ib alpha polypeptide precurso... 29 4.6
gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens] 29 4.6
gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo ... 29 4.6
gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo ... 29 4.6
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 29 4.6
gi|31317263 tafazzin isoform 4 [Homo sapiens] 28 6.0
gi|31317259 tafazzin isoform 2 [Homo sapiens] 28 6.0
gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Hom... 28 6.0
gi|52487176 tripartite motif-containing 37 protein [Homo sapiens] 28 7.9
gi|15147333 tripartite motif-containing 37 protein [Homo sapiens] 28 7.9
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 28 7.9
>gi|239755565 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 535 bits (1379), Expect = e-152
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60
MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA
Sbjct: 1 MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60
Query: 61 YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120
YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV
Sbjct: 61 YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120
Query: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180
QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP
Sbjct: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180
Query: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240
PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC
Sbjct: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240
Query: 241 PYAGRHRIYTAKHVARR 257
PYAGRHRIYTAKHVARR
Sbjct: 241 PYAGRHRIYTAKHVARR 257
>gi|239750071 PREDICTED: hypothetical protein XP_002347270 [Homo
sapiens]
Length = 257
Score = 535 bits (1379), Expect = e-152
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60
MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA
Sbjct: 1 MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60
Query: 61 YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120
YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV
Sbjct: 61 YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120
Query: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180
QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP
Sbjct: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180
Query: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240
PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC
Sbjct: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240
Query: 241 PYAGRHRIYTAKHVARR 257
PYAGRHRIYTAKHVARR
Sbjct: 241 PYAGRHRIYTAKHVARR 257
>gi|239744380 PREDICTED: hypothetical protein XP_002343131 [Homo
sapiens]
Length = 257
Score = 535 bits (1379), Expect = e-152
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60
MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA
Sbjct: 1 MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60
Query: 61 YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120
YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV
Sbjct: 61 YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120
Query: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180
QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP
Sbjct: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180
Query: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240
PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC
Sbjct: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240
Query: 241 PYAGRHRIYTAKHVARR 257
PYAGRHRIYTAKHVARR
Sbjct: 241 PYAGRHRIYTAKHVARR 257
>gi|169162264 PREDICTED: similar to hCG1996527 [Homo sapiens]
Length = 654
Score = 31.6 bits (70), Expect = 0.71
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 18/116 (15%)
Query: 74 GQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPR- 132
G+++ GNN+ S +E+ + STG+ Q + V G PPR
Sbjct: 393 GKVLSPGNNIRLTHNNSTLMLAGVSVEDEAIYQCVAENSTGSNQASARLVVTGGPEPPRP 452
Query: 133 -GPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTI-FPPEGTPA 186
GP H Y CH S++ SSR + + + P G P+
Sbjct: 453 QGPACHGSLY--------FCHSSVL-------GATPPSSRDIIGYVLHLRPVGEPS 493
>gi|239747467 PREDICTED: similar to hCG1996527 [Homo sapiens]
Length = 654
Score = 31.6 bits (70), Expect = 0.71
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 18/116 (15%)
Query: 74 GQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPR- 132
G+++ GNN+ S +E+ + STG+ Q + V G PPR
Sbjct: 393 GKVLSPGNNIRLTHNNSTLMLAGVSVEDEAIYQCVAENSTGSNQASARLVVTGGPEPPRP 452
Query: 133 -GPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTI-FPPEGTPA 186
GP H Y CH S++ SSR + + + P G P+
Sbjct: 453 QGPACHGSLY--------FCHSSVL-------GATPPSSRDIIGYVLHLRPVGEPS 493
>gi|239741341 PREDICTED: similar to hCG1996527 [Homo sapiens]
Length = 654
Score = 31.6 bits (70), Expect = 0.71
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 18/116 (15%)
Query: 74 GQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPR- 132
G+++ GNN+ S +E+ + STG+ Q + V G PPR
Sbjct: 393 GKVLSPGNNIRLTHNNSTLMLAGVSVEDEAIYQCVAENSTGSNQASARLVVTGGPEPPRP 452
Query: 133 -GPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTI-FPPEGTPA 186
GP H Y CH S++ SSR + + + P G P+
Sbjct: 453 QGPACHGSLY--------FCHSSVL-------GATPPSSRDIIGYVLHLRPVGEPS 493
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 98 SFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPT 135
S E+ P+ A P GA + + +EGEAA P PT
Sbjct: 83 SAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPT 120
>gi|124244056 family with sequence similarity 123B [Homo sapiens]
Length = 1135
Score = 29.3 bits (64), Expect = 3.5
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
Query: 90 QPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLS 140
QP+P PE S + P TG K V GE PP GP G LS
Sbjct: 271 QPKPA-----PEASSLEEPHSPETGEK------VVAGEVNPPNGPVGDPLS 310
>gi|88900495 HCF-binding transcription factor Zhangfei [Homo
sapiens]
Length = 354
Score = 29.3 bits (64), Expect = 3.5
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 76 LIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPST---GAKQGDVQCVSEGEAAPPR 132
L G+N TR + PEP CS P + + A + T G+ Q EGE R
Sbjct: 9 LAASGSNSPTRS-ESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDEGELEAGR 67
Query: 133 GPTG 136
G G
Sbjct: 68 GSRG 71
>gi|150417978 platelet glycoprotein Ib alpha polypeptide precursor
[Homo sapiens]
Length = 639
Score = 28.9 bits (63), Expect = 4.6
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 158 LKAGRPNTRTASSRPTVSFTIFPPEGTPAFLLSLREINAFIIVTYRCTTSPRP-PCHSED 216
L + P++ + T T FPP TP F L + I T + TT P P P SE
Sbjct: 334 LDSQMPSSLHPTQESTKEQTTFPPRWTPNFTLHMESIT--FSKTPKSTTEPTPSPTTSEP 391
Query: 217 QGRAQALAATPANNLTPKRSGP 238
PA N+T P
Sbjct: 392 -------VPEPAPNMTTLEPTP 406
>gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens]
Length = 173
Score = 28.9 bits (63), Expect = 4.6
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 82 NVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLSY 141
NV + PE S P+L P Q + SEG + RG TG S+ +
Sbjct: 51 NVNLKSSSDPE----ASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGH 106
Query: 142 S 142
S
Sbjct: 107 S 107
>gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo
sapiens]
Length = 173
Score = 28.9 bits (63), Expect = 4.6
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 82 NVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLSY 141
NV + PE S P+L P Q + SEG + RG TG S+ +
Sbjct: 51 NVNLKSSSDPE----ASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGH 106
Query: 142 S 142
S
Sbjct: 107 S 107
>gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo
sapiens]
Length = 173
Score = 28.9 bits (63), Expect = 4.6
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 82 NVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLSY 141
NV + PE S P+L P Q + SEG + RG TG S+ +
Sbjct: 51 NVNLKSSSDPE----ASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGH 106
Query: 142 S 142
S
Sbjct: 107 S 107
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 28.9 bits (63), Expect = 4.6
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 19/95 (20%)
Query: 39 WRKMKVSRGFCQAQAGAYCLGAYVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCS 98
W K+KV+RG A + G Q G+ + PE Q
Sbjct: 1664 WPKIKVTRGPATA-----------------TLAGLEQTGPLGSRSTAKGPSLPELQFQPE 1706
Query: 99 FPEESYPSLANQPSTGAKQGDV--QCVSEGEAAPP 131
PEES PS P T KQ D + +EG+A P
Sbjct: 1707 EPEESEPSRGQDPLTDQKQADSADKRPAEGKAGSP 1741
>gi|31317263 tafazzin isoform 4 [Homo sapiens]
Length = 248
Score = 28.5 bits (62), Expect = 6.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 4 DNQTVISKDYLQGGLLLRHDYD-HFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGAYV 62
++Q+ + +L G L LRH ++ M T + + + K S F + C G V
Sbjct: 68 NHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGDGV 127
Query: 63 YHEGIDVVL 71
Y +G+D +L
Sbjct: 128 YQKGMDFIL 136
>gi|31317259 tafazzin isoform 2 [Homo sapiens]
Length = 262
Score = 28.5 bits (62), Expect = 6.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 4 DNQTVISKDYLQGGLLLRHDYD-HFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGAYV 62
++Q+ + +L G L LRH ++ M T + + + K S F + C G V
Sbjct: 68 NHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGDGV 127
Query: 63 YHEGIDVVL 71
Y +G+D +L
Sbjct: 128 YQKGMDFIL 136
>gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Homo
sapiens]
Length = 453
Score = 28.5 bits (62), Expect = 6.0
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 88 LQQPEPQGCCSFPEE-SYPSLANQPSTGAKQGDVQCVSEG---------EAAPPRGPTGH 137
L P P+G S +E S P + + GA + D+ V G + P GP H
Sbjct: 332 LHLPLPRGVVSLSQELSSPEQKAELAEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSH 391
Query: 138 SLSYSGTILGITHCHIS 154
LS S + LG+ +S
Sbjct: 392 GLSTSASPLGLGPASLS 408
>gi|52487176 tripartite motif-containing 37 protein [Homo sapiens]
Length = 964
Score = 28.1 bits (61), Expect = 7.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 75 QLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGE 127
Q+ + NN ET LQ P+G + PEE S D++C +E E
Sbjct: 871 QMTDLENNSETGELQPVLPEGASAAPEEGMSS----------DSDIECDTENE 913
>gi|15147333 tripartite motif-containing 37 protein [Homo sapiens]
Length = 964
Score = 28.1 bits (61), Expect = 7.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 75 QLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGE 127
Q+ + NN ET LQ P+G + PEE S D++C +E E
Sbjct: 871 QMTDLENNSETGELQPVLPEGASAAPEEGMSS----------DSDIECDTENE 913
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 28.1 bits (61), Expect = 7.9
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 105 PSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPN 164
P LA P+ G EG A GP+G S G + ++F P
Sbjct: 627 PLLALGPTAGD--------GEGSAEGAGGPSGEPFSGLGDLS-------PLLFPPLSAPP 671
Query: 165 TRTASSRPTVSFTIFPPEGTP 185
T A + ++ T+ PP GTP
Sbjct: 672 TLIALNSALLAATLDPPSGTP 692
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,653,927
Number of Sequences: 37866
Number of extensions: 589074
Number of successful extensions: 1616
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 23
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.