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Search of human proteins with 239744365
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744365 PREDICTED: hypothetical protein XP_002343129 [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744365 PREDICTED: hypothetical protein XP_002343129 [Homo ... 261 9e-71
gi|169202863 PREDICTED: hypothetical protein [Homo sapiens] 63 6e-11
gi|169203519 PREDICTED: hypothetical protein [Homo sapiens] 63 6e-11
gi|115511030 hypothetical protein LOC115004 [Homo sapiens] 35 0.019
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 33 0.071
gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 31 0.21
gi|109637779 centromere protein A isoform b [Homo sapiens] 31 0.27
gi|4502775 centromere protein A isoform a [Homo sapiens] 31 0.27
gi|206597515 ArfGAP with RhoGAP domain, ankyrin repeat and PH do... 31 0.27
gi|206597513 ArfGAP with RhoGAP domain, ankyrin repeat and PH do... 31 0.27
gi|38787970 tensin like C1 domain containing phosphatase isoform... 31 0.27
gi|38787957 tensin like C1 domain containing phosphatase isoform... 31 0.27
gi|38787941 tensin like C1 domain containing phosphatase isoform... 31 0.27
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 31 0.27
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 0.27
gi|153266778 arg tyrosine kinase isoform c [Homo sapiens] 30 0.35
gi|6382062 arg tyrosine kinase isoform b [Homo sapiens] 30 0.35
gi|209862772 arg tyrosine kinase isoform d [Homo sapiens] 30 0.35
gi|153266757 arg tyrosine kinase isoform a [Homo sapiens] 30 0.35
gi|191252814 RIMS binding protein 3B [Homo sapiens] 30 0.60
gi|191252806 RIMS binding protein 3C [Homo sapiens] 30 0.60
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 30 0.60
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 30 0.60
gi|239746599 PREDICTED: hypothetical protein XP_002343795 [Homo ... 29 0.79
gi|8923720 zinc finger, C4H2 domain containing [Homo sapiens] 29 0.79
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 29 0.79
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 29 1.0
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 29 1.0
gi|110227613 centaurin, gamma 3 isoform a [Homo sapiens] 29 1.0
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 29 1.0
>gi|239744365 PREDICTED: hypothetical protein XP_002343129 [Homo
sapiens]
Length = 123
Score = 261 bits (667), Expect = 9e-71
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MATHRSTLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMS 60
MATHRSTLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMS
Sbjct: 1 MATHRSTLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMS 60
Query: 61 RKKQGSDCLVYPGHPPGLWPVISCHLGLSALSSEIWTSNCLCLAALPCDTGLESLTVVCW 120
RKKQGSDCLVYPGHPPGLWPVISCHLGLSALSSEIWTSNCLCLAALPCDTGLESLTVVCW
Sbjct: 61 RKKQGSDCLVYPGHPPGLWPVISCHLGLSALSSEIWTSNCLCLAALPCDTGLESLTVVCW 120
Query: 121 SGI 123
SGI
Sbjct: 121 SGI 123
>gi|169202863 PREDICTED: hypothetical protein [Homo sapiens]
Length = 527
Score = 62.8 bits (151), Expect = 6e-11
Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 17 PQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKKQGSDCLVYPG 73
P R +++ E A+ +AS +LPR+ SLASTGRQGTPM RK+QGSDCLVYPG
Sbjct: 447 PARCPSWQSKVWESAKAPRASH-SAQLPRSSSLASTGRQGTPMRRKEQGSDCLVYPG 502
>gi|169203519 PREDICTED: hypothetical protein [Homo sapiens]
Length = 527
Score = 62.8 bits (151), Expect = 6e-11
Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 17 PQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKKQGSDCLVYPG 73
P R +++ E A+ +AS +LPR+ SLASTGRQGTPM RK+QGSDCLVYPG
Sbjct: 447 PARCPSWQSKVWESAKAPRASH-SAQLPRSSSLASTGRQGTPMRRKEQGSDCLVYPG 502
>gi|115511030 hypothetical protein LOC115004 [Homo sapiens]
Length = 522
Score = 34.7 bits (78), Expect = 0.019
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 16 SPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKKQGSDCLVYPGHP 75
+PQRA T+ A A + P R P+L+ G S +++G+ C P P
Sbjct: 84 APQRAQDTQPSDATSAPGAEGLEPPAA--REPALSRAG------SCRQRGARCSTKPRPP 135
Query: 76 PGLWPVISCHLGLSA 90
PG W V S L +SA
Sbjct: 136 PGPWDVPSPGLPVSA 150
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 32.7 bits (73), Expect = 0.071
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 6 STLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKKQG 65
+T A P +SP R A + K ++ P P L P G G P+SR
Sbjct: 798 ATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGFPENGAPGPPISRFP-- 855
Query: 66 SDCLVYPGHPPGLWP 80
L PG P WP
Sbjct: 856 ---LEEPGPRPLPWP 867
>gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
1 isoform c [Homo sapiens]
Length = 1450
Score = 31.2 bits (69), Expect = 0.21
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 30 KARNRQASPIPTRLPRNPSLASTGRQGTPMSRKKQG---SDCLVYPGHPPGLWPVISCHL 86
+ ++ P P+R+PR +AS +G +S QG D Y G P G W S L
Sbjct: 244 RVMTKKEEPPPSRVPRAVRVASLLSEGEELSGDDQGDEEEDDHAYEGVPNGGWHTSSLSL 303
Query: 87 GL 88
L
Sbjct: 304 SL 305
>gi|109637779 centromere protein A isoform b [Homo sapiens]
Length = 114
Score = 30.8 bits (68), Expect = 0.27
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 24 RNQKAEKARNRQASPIPTRLP--RNPSLASTGRQGTPMSRKKQG 65
R++K E R R SP PT P R PSL ++ Q SR++QG
Sbjct: 6 RSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQ---HSRRRQG 46
>gi|4502775 centromere protein A isoform a [Homo sapiens]
Length = 140
Score = 30.8 bits (68), Expect = 0.27
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 24 RNQKAEKARNRQASPIPTRLP--RNPSLASTGRQGTPMSRKKQG 65
R++K E R R SP PT P R PSL ++ Q SR++QG
Sbjct: 6 RSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQ---HSRRRQG 46
>gi|206597515 ArfGAP with RhoGAP domain, ankyrin repeat and PH
domain 1 isoform d [Homo sapiens]
Length = 1133
Score = 30.8 bits (68), Expect = 0.27
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 34 RQASPIPTRLPRNPSLASTGRQGTPMSRKKQG---SDCLVYPGHPPGLWPVISCHLGL 88
++ P P+R+PR +AS +G +S QG D Y G P G W S L L
Sbjct: 3 KKEEPPPSRVPRAVRVASLLSEGEELSGDDQGDEEEDDHAYEGVPNGGWHTSSLSLSL 60
>gi|206597513 ArfGAP with RhoGAP domain, ankyrin repeat and PH
domain 1 isoform a [Homo sapiens]
Length = 1205
Score = 30.8 bits (68), Expect = 0.27
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 34 RQASPIPTRLPRNPSLASTGRQGTPMSRKKQG---SDCLVYPGHPPGLWPVISCHLGL 88
++ P P+R+PR +AS +G +S QG D Y G P G W S L L
Sbjct: 3 KKEEPPPSRVPRAVRVASLLSEGEELSGDDQGDEEEDDHAYEGVPNGGWHTSSLSLSL 60
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 30.8 bits (68), Expect = 0.27
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 4 HRSTLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKK 63
H STL SP R PT ++ E R + + GR+ + ++
Sbjct: 391 HSSTLTTEPAAESPGRPPPTAAERQELDRLLGGCGVAS------GGRGAGRETAILDDEE 444
Query: 64 Q-----GSDCLVYPGHPPGLWPVISCHLG 87
Q G VYPGH PGL SC G
Sbjct: 445 QPTVGGGPHLGVYPGHRPGLSRHCSCRQG 473
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 30.8 bits (68), Expect = 0.27
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 4 HRSTLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKK 63
H STL SP R PT ++ E R + + GR+ + ++
Sbjct: 515 HSSTLTTEPAAESPGRPPPTAAERQELDRLLGGCGVAS------GGRGAGRETAILDDEE 568
Query: 64 Q-----GSDCLVYPGHPPGLWPVISCHLG 87
Q G VYPGH PGL SC G
Sbjct: 569 QPTVGGGPHLGVYPGHRPGLSRHCSCRQG 597
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 30.8 bits (68), Expect = 0.27
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 4 HRSTLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKK 63
H STL SP R PT ++ E R + + GR+ + ++
Sbjct: 525 HSSTLTTEPAAESPGRPPPTAAERQELDRLLGGCGVAS------GGRGAGRETAILDDEE 578
Query: 64 Q-----GSDCLVYPGHPPGLWPVISCHLG 87
Q G VYPGH PGL SC G
Sbjct: 579 QPTVGGGPHLGVYPGHRPGLSRHCSCRQG 607
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 30.8 bits (68), Expect = 0.27
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 9 AGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKK 63
AGY P S Q+ A AE++ N SP+ T P++PS ++ ++GTP S K
Sbjct: 107 AGY-PLSERQQVALLMQMTAEESAN---SPVDTT-PKHPSQSTVCQKGTPNSASK 156
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 30.8 bits (68), Expect = 0.27
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 5 RSTLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKKQ 64
R +L+G SPC + P R ++ ++ + S P R R+ S ++ SR+
Sbjct: 776 RRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSH 835
Query: 65 GSDC---LVYPGHPP 76
S V G PP
Sbjct: 836 SSSSPHPKVKSGTPP 850
Score = 27.3 bits (59), Expect = 3.0
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 6 STLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLAST--GRQGTPMSRKK 63
+T P + P A+PTR++ K+ P +LP++ S S+ Q T +SR
Sbjct: 383 TTPLSQEPVNPPSEASPTRDRSPPKS--------PEKLPQSSSSESSPPSPQPTKVSRHA 434
Query: 64 QGSDCLVYPGHPPG 77
S P PG
Sbjct: 435 SSSPESPKPAPAPG 448
Score = 26.6 bits (57), Expect = 5.1
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 5 RSTLAGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKKQ 64
R + +G SP + A R Q + +P P LPR S+ + P
Sbjct: 1594 RRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSS 1653
Query: 65 GSDCLVYPGHPP 76
++ P HPP
Sbjct: 1654 STES--SPEHPP 1663
>gi|153266778 arg tyrosine kinase isoform c [Homo sapiens]
Length = 1167
Score = 30.4 bits (67), Expect = 0.35
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 13 PCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRN---------PSLASTGRQGTPMSRKK 63
P S + AAP+R + K R A+ +P R P P + G P ++K
Sbjct: 819 PKKSEESAAPSRERPKAKLLPRGATALPLRTPSGDLAITEKDPPGVGVAGVAAAPKGKEK 878
Query: 64 QGSDCLVYPGHP-----PGLWP 80
G L G P PG WP
Sbjct: 879 NGGARLGMAGVPEDGEQPG-WP 899
>gi|6382062 arg tyrosine kinase isoform b [Homo sapiens]
Length = 1182
Score = 30.4 bits (67), Expect = 0.35
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 13 PCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRN---------PSLASTGRQGTPMSRKK 63
P S + AAP+R + K R A+ +P R P P + G P ++K
Sbjct: 834 PKKSEESAAPSRERPKAKLLPRGATALPLRTPSGDLAITEKDPPGVGVAGVAAAPKGKEK 893
Query: 64 QGSDCLVYPGHP-----PGLWP 80
G L G P PG WP
Sbjct: 894 NGGARLGMAGVPEDGEQPG-WP 914
>gi|209862772 arg tyrosine kinase isoform d [Homo sapiens]
Length = 1064
Score = 30.4 bits (67), Expect = 0.35
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 13 PCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRN---------PSLASTGRQGTPMSRKK 63
P S + AAP+R + K R A+ +P R P P + G P ++K
Sbjct: 716 PKKSEESAAPSRERPKAKLLPRGATALPLRTPSGDLAITEKDPPGVGVAGVAAAPKGKEK 775
Query: 64 QGSDCLVYPGHP-----PGLWP 80
G L G P PG WP
Sbjct: 776 NGGARLGMAGVPEDGEQPG-WP 796
>gi|153266757 arg tyrosine kinase isoform a [Homo sapiens]
Length = 1146
Score = 30.4 bits (67), Expect = 0.35
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 13 PCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRN---------PSLASTGRQGTPMSRKK 63
P S + AAP+R + K R A+ +P R P P + G P ++K
Sbjct: 798 PKKSEESAAPSRERPKAKLLPRGATALPLRTPSGDLAITEKDPPGVGVAGVAAAPKGKEK 857
Query: 64 QGSDCLVYPGHP-----PGLWP 80
G L G P PG WP
Sbjct: 858 NGGARLGMAGVPEDGEQPG-WP 878
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 29.6 bits (65), Expect = 0.60
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 1 MATHRSTLAGYSPCSSPQRAAPTRNQKAEKAR------------NRQASPIPTRLPRNPS 48
++TH S+L ++P S + KA K+ +R+ SP P+ LP P
Sbjct: 278 LSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPP 337
Query: 49 LASTGRQGTPMSRKKQGSD---CLVYPGHPPGL 78
++ + P R +GS+ C V PPGL
Sbjct: 338 PSAHRKLSNP--RGGEGSESQPCEVLTPSPPGL 368
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 29.6 bits (65), Expect = 0.60
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 1 MATHRSTLAGYSPCSSPQRAAPTRNQKAEKAR------------NRQASPIPTRLPRNPS 48
++TH S+L ++P S + KA K+ +R+ SP P+ LP P
Sbjct: 278 LSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPP 337
Query: 49 LASTGRQGTPMSRKKQGSD---CLVYPGHPPGL 78
++ + P R +GS+ C V PPGL
Sbjct: 338 PSAHRKLSNP--RGGEGSESQPCEVLTPSPPGL 368
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 29.6 bits (65), Expect = 0.60
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 18 QRAAPTRNQKAEKARNRQASPIPTRLPRN-PSLASTGRQGTPMSRKKQGSDCLVYPGHPP 76
Q A R Q+ ++ R R SP P ++ P L S R+ P +R ++G D P PP
Sbjct: 53 QAAHRPRQQQRQQQRPRPRSPDPAARGQHVPELRS--RKPGPAARTEEGGDVTGRPWQPP 110
Query: 77 GLWP 80
L P
Sbjct: 111 LLPP 114
Score = 26.6 bits (57), Expect = 5.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 11 YSPCSSPQRAAPTR-NQKAEKARNRQASPIPTRLPRNPSLASTGR 54
+ P P PT N+ E+ R+A P P PR +A+ GR
Sbjct: 107 WQPPLLPPPGVPTPGNRGGERRGERRAPPRPAGAPRGSPMAARGR 151
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 29.6 bits (65), Expect = 0.60
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 1 MATHRSTLAGYSPCSSPQRAAPTRNQKAEKAR------------NRQASPIPTRLPRNPS 48
++TH S+L ++P S + KA K+ +R+ SP P+ LP P
Sbjct: 278 LSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPP 337
Query: 49 LASTGRQGTPMSRKKQGSD---CLVYPGHPPGL 78
++ + P R +GS+ C V PPGL
Sbjct: 338 PSAHRKLSNP--RGGEGSESQPCEVLTPSPPGL 368
>gi|239746599 PREDICTED: hypothetical protein XP_002343795 [Homo
sapiens]
Length = 443
Score = 29.3 bits (64), Expect = 0.79
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 9 AGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTG--RQGTPMSRKKQGS 66
AG P SP+ A+P Q + P + P PS + G P + Q
Sbjct: 153 AGNVPELSPRPASPRGQQVTQDG--------PLQTPELPSECNVGPVMSRQPFPEQSQQG 204
Query: 67 DCLVYPGHPPGLWPVISCHLGL 88
+C + P PP L ++ LGL
Sbjct: 205 ECAIDPRGPPRLELSLAGELGL 226
>gi|8923720 zinc finger, C4H2 domain containing [Homo sapiens]
Length = 224
Score = 29.3 bits (64), Expect = 0.79
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 26 QKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKKQGSDCLVYPGHPPGLWPVISCH 85
QKAE Q PIP L + A+ Q ++RK+ + PP + +SCH
Sbjct: 138 QKAEWQTEPQEPPIPESL----AAAAAAAQQLQVARKQDTRQTATFRQQPPPMKACLSCH 193
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 29.3 bits (64), Expect = 0.79
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 5 RSTLAGYSPCSSPQRAAPTRNQKAEKARNRQ----ASPIPTRLPRNPSLASTGRQGTPMS 60
RS + YS SS R++ + ++R+R SP PT P PS+ + G P
Sbjct: 573 RSRSSSYSSYSS--RSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSIRTKGEPAPPPG 630
Query: 61 RKKQGSDCLVYPGHPP 76
K G + P PP
Sbjct: 631 --KAGEKSVKKPAPPP 644
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 28.9 bits (63), Expect = 1.0
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 20 AAPTRNQKAEKARNRQASPIPTRLPRNPSLASTG------------RQGTPMSRKKQGSD 67
AAP + ++ ++ N A P P R P P TG R+ SRK QG
Sbjct: 41 AAPAHSPQSLQSLN--APPSPPRHPWTPEAMGTGGCQGKVKFFLGIRERGRSSRKHQGPR 98
Query: 68 CLVYPGHPP 76
L P HPP
Sbjct: 99 ELGRPPHPP 107
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 28.9 bits (63), Expect = 1.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 13 PCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSRKKQGS 66
P ++P A+P Q AE++R P PR P A T S ++ GS
Sbjct: 285 PQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRPPPATAPSPRRAGS 338
>gi|110227613 centaurin, gamma 3 isoform a [Homo sapiens]
Length = 911
Score = 28.9 bits (63), Expect = 1.0
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 9 AGYSPCSSPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLAS---TGRQGTPMSRKKQG 65
+ +S SS + P+ +Q+ + AS PT + + S T R+G + R+K+
Sbjct: 330 SAFSDYSSSVPSTPSISQRELRIETIAASSTPTPIRKQSKRRSNIFTSRKGADLDREKKA 389
Query: 66 SDCLV 70
++C V
Sbjct: 390 AECKV 394
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 28.9 bits (63), Expect = 1.0
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 16 SPQRAAPTRNQKAEKA------RNRQASPIPTRLPRNPSLASTGRQ---GTPMSRKKQGS 66
SP R+A +K +K R R SP PTR R+PS A R+ TP R++ S
Sbjct: 524 SPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPS 583
Score = 26.9 bits (58), Expect = 3.9
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 12 SPCSSPQRAA-----PTRNQKAEKARNRQASPIPTRLPRNPSLASTGRQGTPMSR 61
SP P+R A P R +++SP+ R R+PSL+S R+G+ SR
Sbjct: 616 SPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKR--RSPSLSSKHRKGSSPSR 668
Score = 25.8 bits (55), Expect = 8.7
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 4 HRSTLAGYSPCS--------SPQRAAPTRNQKAEKARNRQASPIPTRLPRNPSLAST 52
HRS YSP SP+R P R R SP+ R + SL+ +
Sbjct: 302 HRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGS 358
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,850,618
Number of Sequences: 37866
Number of extensions: 302956
Number of successful extensions: 1416
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 171
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.