Search of human proteins with 239744180

Search of human proteins with 239744180

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744180 PREDICTED: hypothetical protein XP_002343069 [Homo
sapiens]
         (309 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749878 PREDICTED: hypothetical protein [Homo sapiens]           618   e-177
gi|239744180 PREDICTED: hypothetical protein XP_002343069 [Homo ...   618   e-177
gi|12056463 coagulation factor VIII-associated protein [Homo sap...    37   0.017
gi|56090586 coagulation factor VIII-associated (intronic transcr...    37   0.017
gi|56090588 coagulation factor VIII-associated (intronic transcr...    37   0.017
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]            36   0.049
gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]            33   0.32 
gi|239756380 PREDICTED: hypothetical protein [Homo sapiens]            33   0.32 
gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo ...    33   0.32 
gi|239750901 PREDICTED: hypothetical protein XP_002347602 [Homo ...    33   0.32 
gi|239745293 PREDICTED: hypothetical protein XP_002343426 [Homo ...    33   0.32 
gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]           33   0.42 
gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo ...    33   0.42 
gi|67906195 ankyrin repeat and sterile alpha motif domain contai...    33   0.42 
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]            32   0.55 
gi|21955174 kinesin family member C2 [Homo sapiens]                    32   0.55 
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         32   0.55 
gi|4885455 SH2B adaptor protein 3 [Homo sapiens]                       32   0.93 
gi|169160755 PREDICTED: zyg-11 homolog A (C. elegans) [Homo sapi...    32   0.93 
gi|88948888 PREDICTED: zyg-11 homolog A (C. elegans) [Homo sapiens]    32   0.93 
gi|113408672 PREDICTED: zyg-11 homolog A [Homo sapiens]                32   0.93 
gi|226437632 zyg-11 homolog A [Homo sapiens]                           32   0.93 
gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo sa...    31   1.2  
gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo s...    31   1.2  
gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo s...    31   1.2  
gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo s...    31   1.2  
gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]            31   1.2  
gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo ...    31   1.2  
gi|239747341 PREDICTED: hypothetical protein [Homo sapiens]            31   1.2  
gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo ...    31   1.2  

>gi|239749878 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 309

 Score =  618 bits (1594), Expect = e-177
 Identities = 309/309 (100%), Positives = 309/309 (100%)

Query: 1   MSSSCPSTLRPMTRKLPARLSSCGQGQPAPFFMCSTSRLVSLRFRGPGLSSFFFFWAPIS 60
           MSSSCPSTLRPMTRKLPARLSSCGQGQPAPFFMCSTSRLVSLRFRGPGLSSFFFFWAPIS
Sbjct: 1   MSSSCPSTLRPMTRKLPARLSSCGQGQPAPFFMCSTSRLVSLRFRGPGLSSFFFFWAPIS 60

Query: 61  FRSPFSILISLMRILTTSLEHICSMRPSALCSISHWAQILVTEERKRGGGQVPELHGDAE 120
           FRSPFSILISLMRILTTSLEHICSMRPSALCSISHWAQILVTEERKRGGGQVPELHGDAE
Sbjct: 61  FRSPFSILISLMRILTTSLEHICSMRPSALCSISHWAQILVTEERKRGGGQVPELHGDAE 120

Query: 121 VVVQGELVAVQHLRPGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRV 180
           VVVQGELVAVQHLRPGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRV
Sbjct: 121 VVVQGELVAVQHLRPGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRV 180

Query: 181 AALGQQRQPAARLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQR 240
           AALGQQRQPAARLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQR
Sbjct: 181 AALGQQRQPAARLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQR 240

Query: 241 LGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRP 300
           LGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRP
Sbjct: 241 LGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRP 300

Query: 301 RCSGVRPRP 309
           RCSGVRPRP
Sbjct: 301 RCSGVRPRP 309


>gi|239744180 PREDICTED: hypothetical protein XP_002343069 [Homo
           sapiens]
          Length = 309

 Score =  618 bits (1594), Expect = e-177
 Identities = 309/309 (100%), Positives = 309/309 (100%)

Query: 1   MSSSCPSTLRPMTRKLPARLSSCGQGQPAPFFMCSTSRLVSLRFRGPGLSSFFFFWAPIS 60
           MSSSCPSTLRPMTRKLPARLSSCGQGQPAPFFMCSTSRLVSLRFRGPGLSSFFFFWAPIS
Sbjct: 1   MSSSCPSTLRPMTRKLPARLSSCGQGQPAPFFMCSTSRLVSLRFRGPGLSSFFFFWAPIS 60

Query: 61  FRSPFSILISLMRILTTSLEHICSMRPSALCSISHWAQILVTEERKRGGGQVPELHGDAE 120
           FRSPFSILISLMRILTTSLEHICSMRPSALCSISHWAQILVTEERKRGGGQVPELHGDAE
Sbjct: 61  FRSPFSILISLMRILTTSLEHICSMRPSALCSISHWAQILVTEERKRGGGQVPELHGDAE 120

Query: 121 VVVQGELVAVQHLRPGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRV 180
           VVVQGELVAVQHLRPGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRV
Sbjct: 121 VVVQGELVAVQHLRPGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRV 180

Query: 181 AALGQQRQPAARLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQR 240
           AALGQQRQPAARLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQR
Sbjct: 181 AALGQQRQPAARLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQR 240

Query: 241 LGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRP 300
           LGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRP
Sbjct: 241 LGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRP 300

Query: 301 RCSGVRPRP 309
           RCSGVRPRP
Sbjct: 301 RCSGVRPRP 309


>gi|12056463 coagulation factor VIII-associated protein [Homo
           sapiens]
          Length = 371

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 51/183 (27%), Positives = 71/183 (38%), Gaps = 29/183 (15%)

Query: 135 PGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERA-----QEDLRIRVAALG----- 184
           PGEA+ L E            AAR+    E D R+         E L+   +ALG     
Sbjct: 84  PGEALALTE------------AARLFLRQERDARQRLVCPAAYGEPLQAAASALGAAVRL 131

Query: 185 --QQRQPAARLLLHFGQALVLQQVGQPHALVAH--RVAERQVGR-DVKALRRLGVGAAVQ 239
             +  QPAA   L    A  L+ +GQP A   H  R A+ Q+ +  + AL+ LG  A+ Q
Sbjct: 132 HLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALGEAASCQ 191

Query: 240 RLG--LPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGA 297
            L       + V    +R   +      Q   P  PP  +   G   +  A   PP  G+
Sbjct: 192 LLARDYTGALAVFTRMQRLAREHGSHPVQSLPPPPPPAPQPGPGATPALPAALLPPNSGS 251

Query: 298 RRP 300
             P
Sbjct: 252 AAP 254


>gi|56090586 coagulation factor VIII-associated (intronic
           transcript) 3 [Homo sapiens]
          Length = 371

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 51/183 (27%), Positives = 71/183 (38%), Gaps = 29/183 (15%)

Query: 135 PGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERA-----QEDLRIRVAALG----- 184
           PGEA+ L E            AAR+    E D R+         E L+   +ALG     
Sbjct: 84  PGEALALTE------------AARLFLRQERDARQRLVCPAAYGEPLQAAASALGAAVRL 131

Query: 185 --QQRQPAARLLLHFGQALVLQQVGQPHALVAH--RVAERQVGR-DVKALRRLGVGAAVQ 239
             +  QPAA   L    A  L+ +GQP A   H  R A+ Q+ +  + AL+ LG  A+ Q
Sbjct: 132 HLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALGEAASCQ 191

Query: 240 RLG--LPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGA 297
            L       + V    +R   +      Q   P  PP  +   G   +  A   PP  G+
Sbjct: 192 LLARDYTGALAVFTRMQRLAREHGSHPVQSLPPPPPPAPQPGPGATPALPAALLPPNSGS 251

Query: 298 RRP 300
             P
Sbjct: 252 AAP 254


>gi|56090588 coagulation factor VIII-associated (intronic
           transcript) 2 [Homo sapiens]
          Length = 371

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 51/183 (27%), Positives = 71/183 (38%), Gaps = 29/183 (15%)

Query: 135 PGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERA-----QEDLRIRVAALG----- 184
           PGEA+ L E            AAR+    E D R+         E L+   +ALG     
Sbjct: 84  PGEALALTE------------AARLFLRQERDARQRLVCPAAYGEPLQAAASALGAAVRL 131

Query: 185 --QQRQPAARLLLHFGQALVLQQVGQPHALVAH--RVAERQVGR-DVKALRRLGVGAAVQ 239
             +  QPAA   L    A  L+ +GQP A   H  R A+ Q+ +  + AL+ LG  A+ Q
Sbjct: 132 HLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALGEAASCQ 191

Query: 240 RLG--LPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGA 297
            L       + V    +R   +      Q   P  PP  +   G   +  A   PP  G+
Sbjct: 192 LLARDYTGALAVFTRMQRLAREHGSHPVQSLPPPPPPAPQPGPGATPALPAALLPPNSGS 251

Query: 298 RRP 300
             P
Sbjct: 252 AAP 254


>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 263

 Score = 35.8 bits (81), Expect = 0.049
 Identities = 29/77 (37%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 230 RRLGVGAAVQRLGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAP 289
           R L  GAA  R   PA   +L  A          +R   R    P RRR   C    CAP
Sbjct: 164 RGLASGAARARPASPAPARLLPLAVGASAAAGDTRRTEARAEPSPSRRRRRRC----CAP 219

Query: 290 RSPPTLGARRPRCSGVR 306
             P +L ARRP C G R
Sbjct: 220 L-PGSLPARRPGCGGRR 235


>gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 18/50 (36%), Positives = 21/50 (42%)

Query: 251 LAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRP 300
           L  R RP+  P     R R   P R        L+  AP +PP L  RRP
Sbjct: 143 LGTRERPLAAPPGNCARSRREGPSRPAPTGAAPLAPPAPHAPPPLPGRRP 192


>gi|239756380 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 227 KALRRLGVGAAVQR-----LGL-PAIVVVLLAARRRPVQRPQQQRQ---RGRPHAPPRRR 277
           +A R LG GAA        LG  PA+    +   RRP +RP    +   RG P  PPR  
Sbjct: 67  RASRPLGSGAAFDPFKSAPLGAEPALSSGAVPRARRPPRRPHPPARLPGRGTPFGPPRDL 126

Query: 278 RPHGCALSRCAPRSPPTLGARRP 300
             H  A +R AP  P   G   P
Sbjct: 127 HTHTLARTR-APLPPGASGGSPP 148


>gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo
           sapiens]
          Length = 325

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 50/175 (28%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 132 HLRPGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRVAALGQQRQPAA 191
           H+R    +G  E+ A G   L      + G    D R  R    LR+  +   Q +Q AA
Sbjct: 3   HMRLAAVLGQLEQAALGQQALGAVVDILQGAGGPDQRGPR----LRLGGSGTRQLQQAAA 58

Query: 192 RLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQRLGLPAIVVVLL 251
                 G+A  L    QP  +       R  GR V          A QR G   +     
Sbjct: 59  TREGEEGEAGGLSD--QPGVM-------RTQGRTVGVAALHARVRASQRAGRHPV----- 104

Query: 252 AARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRPRCSGVR 306
            A   P QR  QQ QR R  AP R        L +  P  P   G +RP    VR
Sbjct: 105 EAELGPAQRAVQQEQRARARAPGRVPGGRPRLLQQSRPPLPRRHGHQRPVVLRVR 159


>gi|239750901 PREDICTED: hypothetical protein XP_002347602 [Homo
           sapiens]
          Length = 151

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 227 KALRRLGVGAAVQR-----LGL-PAIVVVLLAARRRPVQRPQQQRQ---RGRPHAPPRRR 277
           +A R LG GAA        LG  PA+    +   RRP +RP    +   RG P  PPR  
Sbjct: 67  RASRPLGSGAAFDPFKSAPLGAEPALSSGAVPRARRPPRRPHPPARLPGRGTPFGPPRDL 126

Query: 278 RPHGCALSRCAPRSPPTLGARRP 300
             H  A +R AP  P   G   P
Sbjct: 127 HTHTLARTR-APLPPGASGGSPP 148


>gi|239745293 PREDICTED: hypothetical protein XP_002343426 [Homo
           sapiens]
          Length = 151

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 227 KALRRLGVGAAVQR-----LGL-PAIVVVLLAARRRPVQRPQQQRQ---RGRPHAPPRRR 277
           +A R LG GAA        LG  PA+    +   RRP +RP    +   RG P  PPR  
Sbjct: 67  RASRPLGSGAAFDPFKSAPLGAEPALSSGAVPRARRPPRRPHPPARLPGRGTPFGPPRDL 126

Query: 278 RPHGCALSRCAPRSPPTLGARRP 300
             H  A +R AP  P   G   P
Sbjct: 127 HTHTLARTR-APLPPGASGGSPP 148


>gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]
          Length = 325

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 49/175 (28%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 132 HLRPGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRVAALGQQRQPAA 191
           H+R    +G  E+ A G   L      + G     G  E+    LR+  +   Q +Q AA
Sbjct: 3   HMRLAAVLGQLEQAALGQQALGAVVDILQGA----GGPEQRGPRLRLGGSGTRQLQQAAA 58

Query: 192 RLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQRLGLPAIVVVLL 251
                 G+A  L    QP  +       R  GR V          A QR G   +     
Sbjct: 59  TREGEEGEAGGLSD--QPGVM-------RTQGRTVGVAALHARFRASQRAGRHPV----- 104

Query: 252 AARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRPRCSGVR 306
            A   P QR  QQ QR R  AP R        L +  P  P   G +RP    VR
Sbjct: 105 EAELGPAQRAVQQEQRARARAPGRVPGGRPRLLQQSRPPLPRRHGRQRPVVLRVR 159


>gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo
           sapiens]
          Length = 368

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 52/175 (29%), Positives = 63/175 (36%), Gaps = 20/175 (11%)

Query: 134 RPGE--AVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRVAALGQQRQPAA 191
           RPGE   +G  E+ A G   L      + G    D R  R    LR+  +   Q +Q AA
Sbjct: 46  RPGEPAVLGQLEQAALGQQALGAVVDILQGAGGPDQRGPR----LRLGGSGTRQLQQAAA 101

Query: 192 RLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQRLGLPAIVVVLL 251
                 G+A  L    QP  +       R  GR V          A QR G   +     
Sbjct: 102 TREGEEGEAGGLSD--QPGVM-------RTQGRTVGVAALHARVRASQRAGRHPV----- 147

Query: 252 AARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRPRCSGVR 306
            A   P QR  QQ QR R  AP R        L +  P  P   G +RP    VR
Sbjct: 148 EAELGPAQRAVQQEQRARARAPGRVPGGRPRLLQQSRPPLPRRHGHQRPVVLRVR 202


>gi|67906195 ankyrin repeat and sterile alpha motif domain
           containing 6 [Homo sapiens]
          Length = 871

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 17/113 (15%)

Query: 153 AQRAARVDGPVETDGRKERAQEDLRIRVAALGQQRQPAARLLL----------HFGQALV 202
           A  A  V  PV  D   E     L+   A      +P  R LL          H+G + +
Sbjct: 59  AAAAGAVGAPVPVDCSDEAGNTALQFAAAG---GHEPLVRFLLRRGASVNSRNHYGWSAL 115

Query: 203 LQQVGQPHALVAHRVAERQVGRDVKALRRLG--VGAAVQRLGLPAIVVVLLAA 253
           +Q     H  VAH + +   G DV A  RLG  V     R G   +V +LL A
Sbjct: 116 MQAARFGHVSVAHLLLDH--GADVNAQNRLGASVLTVASRGGHLGVVKLLLEA 166


>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 381

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 54/189 (28%), Positives = 67/189 (35%), Gaps = 40/189 (21%)

Query: 148 GAHGLAQRA---ARVDGPVETDGRKERAQE--------------DLRIRVAAL-----GQ 185
           G HG  Q+A   A +   V+   R +R  E              +L+I V  L     GQ
Sbjct: 180 GVHGGLQQAPVDAVIAASVQDASRGQRGAELRLDLVHGPWGRGKELKILVLLLLPVQSGQ 239

Query: 186 QRQPAARLLLHFGQALVLQQVGQPHALVAHRVAERQVGRDVKALRRLGVGAAVQRLGLPA 245
           QRQ       H  +    Q V      V H    R  GR     R     AA     LP 
Sbjct: 240 QRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAAASP-DLP- 297

Query: 246 IVVVLLAARRRPVQRPQQQRQRGRPHAPPR-----RRRPHGCALSRCAPRSPPTLGAR-R 299
                     +P +R + + +   P APPR     RR P   A S     SPPT     R
Sbjct: 298 ----------QPAERSRGEPRPAEPRAPPRPPPAARRPPPATAPSPRRAGSPPTREEEPR 347

Query: 300 PRCSGVRPR 308
           PR S  RP+
Sbjct: 348 PRRSAARPQ 356


>gi|21955174 kinesin family member C2 [Homo sapiens]
          Length = 838

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 52/185 (28%), Positives = 68/185 (36%), Gaps = 40/185 (21%)

Query: 135 PGEAVGLHERRAAGAHGLAQRAARVDGPVETDGRKERAQEDLRIRVAALGQQRQPAARLL 194
           PG A  LH    AG+     R A   GP   D    R     R+R A      Q   R L
Sbjct: 617 PGTAGTLHLVDLAGSE--RARKAGAAGPPRGDPDGAR-----RLREA------QTINRSL 663

Query: 195 LHFGQALVLQQVGQPHALVAH----RVAERQVGRDVKALRRLGVGAAVQRLGLPAIVVVL 250
           L  G  +   +  +PH         R+ +  +G    A+  L VGA   ++         
Sbjct: 664 LALGGVMAALRAHRPHVPFRDSQLTRLLQPALGPGTTAVLLLQVGAGAGQV--------- 714

Query: 251 LAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCALS--RCAPRSPPTLGAR----RPRCSG 304
            A R  P         R RP AP  RR P G  +S  + AP S PT   +    +P  +G
Sbjct: 715 CACRSPPT--------RARPPAPLARRSPRGRRISGRQSAPSSSPTEWVKWSWGQPGAAG 766

Query: 305 VRPRP 309
            R  P
Sbjct: 767 SRAPP 771


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 18/48 (37%), Positives = 22/48 (45%)

Query: 254 RRRPVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRPR 301
           RR P   P ++R+   P  PPRRRR       R  P  PP   +  PR
Sbjct: 547 RRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPR 594


>gi|4885455 SH2B adaptor protein 3 [Homo sapiens]
          Length = 575

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 78  SLEHICSMRPSALCSISHWAQILVTEERKRGGGQVPELHGDAEVVVQGELVAVQHLRPGE 137
           S E +   RP   CS  H+ + L    R+R  G++P  H  A     GE  A    RPG 
Sbjct: 120 SSEELAPPRPPGPCSFQHFRRSLRHIFRRRSAGELPAAHTAAAPGTPGE-AAETPARPGL 178

Query: 138 A 138
           A
Sbjct: 179 A 179


>gi|169160755 PREDICTED: zyg-11 homolog A (C. elegans) [Homo
          sapiens]
          Length = 736

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 63 SPFSILISLMRILTTSLEHICSMRP-SALCSISHWA 97
          SP++++   + +L  +LE +CS RP   LC   HW+
Sbjct: 34 SPYTLVNICLNVLIANLEKLCSERPDGTLCLPEHWS 69


>gi|88948888 PREDICTED: zyg-11 homolog A (C. elegans) [Homo
          sapiens]
          Length = 736

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 63 SPFSILISLMRILTTSLEHICSMRP-SALCSISHWA 97
          SP++++   + +L  +LE +CS RP   LC   HW+
Sbjct: 34 SPYTLVNICLNVLIANLEKLCSERPDGTLCLPEHWS 69


>gi|113408672 PREDICTED: zyg-11 homolog A [Homo sapiens]
          Length = 759

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 63 SPFSILISLMRILTTSLEHICSMRP-SALCSISHWA 97
          SP++++   + +L  +LE +CS RP   LC   HW+
Sbjct: 34 SPYTLVNICLNVLIANLEKLCSERPDGTLCLPEHWS 69


>gi|226437632 zyg-11 homolog A [Homo sapiens]
          Length = 759

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 63 SPFSILISLMRILTTSLEHICSMRP-SALCSISHWA 97
          SP++++   + +L  +LE +CS RP   LC   HW+
Sbjct: 34 SPYTLVNICLNVLIANLEKLCSERPDGTLCLPEHWS 69


>gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo
           sapiens]
          Length = 630

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 256 RPVQRPQQQRQRGRPHAPPRRRRPHGCA-LSRCAPRSPPTLG 296
           RP   P    +   P  PPR  RP   A  SR APR PP  G
Sbjct: 400 RPQPTPAFSSRTAGPPDPPRAARPSSAAPASRGAPRLPPVCG 441


>gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo
           sapiens]
          Length = 618

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 256 RPVQRPQQQRQRGRPHAPPRRRRPHGCA-LSRCAPRSPPTLG 296
           RP   P    +   P  PPR  RP   A  SR APR PP  G
Sbjct: 388 RPQPTPAFSSRTAGPPDPPRAARPSSAAPASRGAPRLPPVCG 429


>gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo
           sapiens]
          Length = 649

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 256 RPVQRPQQQRQRGRPHAPPRRRRPHGCA-LSRCAPRSPPTLG 296
           RP   P    +   P  PPR  RP   A  SR APR PP  G
Sbjct: 388 RPQPTPAFSSRTAGPPDPPRAARPSSAAPASRGAPRLPPVCG 429


>gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 256 RPVQRPQQQRQRGRPHAPPRRRRPHGCA-LSRCAPRSPPTLG 296
           RP   P    +   P  PPR  RP   A  SR APR PP  G
Sbjct: 400 RPQPTPAFSSRTAGPPDPPRAARPSSAAPASRGAPRLPPVCG 441


>gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 576

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 57/232 (24%), Positives = 82/232 (35%), Gaps = 34/232 (14%)

Query: 91  CSISHWAQILVTEERKRGGGQV--PELHGDAEVVVQGELVAVQHLRPGEAVGLHERRAAG 148
           C  +   Q+    +  + GG+V  P LH     + +G  V   H  PG+      RR  G
Sbjct: 113 CPPAAGGQVAARGKEPKPGGRVTLPALH-----LPKG--VCPHH--PGKGSAGPSRRGRG 163

Query: 149 AHGLAQRAARVDGPVETDGRKERAQEDLRIRVAALGQQRQPAA---RLLLHFGQALVLQQ 205
                 R + ++   E+   +  A  +   R    G+    A+    L  H  ++L+L+ 
Sbjct: 164 QRAKGFRGSEMNS--ESRRGQTAAGREKHPRAGCSGEGETGASYPEELHGHEAESLLLEA 221

Query: 206 VGQ-PHALVAHRV------AERQVGRDV--KALRRLGVGAAVQRLGLPAIVVVLLAARRR 256
           +    H    H V         QVG     + L   G GAA+      A        RRR
Sbjct: 222 LDDLAHQAALHAVRLDGDEGALQVGHGPAGRELEGPGGGAALGEQRAGATTTPGSRRRRR 281

Query: 257 PVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRPRCSGVRPR 308
              R       G P  P RR  P         P  P   G + PR +G RPR
Sbjct: 282 GAGRSAGWPHPGGPSRPTRRNAP---------PARPDAAGEQCPRPAGARPR 324


>gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo
           sapiens]
          Length = 404

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 57/232 (24%), Positives = 82/232 (35%), Gaps = 34/232 (14%)

Query: 91  CSISHWAQILVTEERKRGGGQV--PELHGDAEVVVQGELVAVQHLRPGEAVGLHERRAAG 148
           C  +   Q+    +  + GG+V  P LH     + +G  V   H  PG+      RR  G
Sbjct: 113 CPPAAGGQVAARGKEPKPGGRVTLPALH-----LPKG--VCPHH--PGKGSAGPSRRGRG 163

Query: 149 AHGLAQRAARVDGPVETDGRKERAQEDLRIRVAALGQQRQPAA---RLLLHFGQALVLQQ 205
                 R + ++   E+   +  A  +   R    G+    A+    L  H  ++L+L+ 
Sbjct: 164 QRAKGFRGSEMNS--ESRRGQTAAGREKHPRAGCSGEGETGASYPEELHGHEAESLLLEA 221

Query: 206 VGQ-PHALVAHRV------AERQVGRDV--KALRRLGVGAAVQRLGLPAIVVVLLAARRR 256
           +    H    H V         QVG     + L   G GAA+      A        RRR
Sbjct: 222 LDDLAHQAALHAVRLDGDEGALQVGHGPAGRELEGPGGGAALGEQRAGATTTPGSRRRRR 281

Query: 257 PVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRPRCSGVRPR 308
              R       G P  P RR  P         P  P   G + PR +G RPR
Sbjct: 282 GAGRSAGWPHPGGPSRPTRRNAP---------PARPDAAGEQCPRPAGARPR 324


>gi|239747341 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 221

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 56/202 (27%), Positives = 77/202 (38%), Gaps = 38/202 (18%)

Query: 113 PELHGDAEVVVQGELVAVQHLRPGEAVGLHERRAAGAHGL--AQRAAR-----VDGPVET 165
           P  H D    V   LV  +HLR  +       RAAG + +  A+R AR     V+   ET
Sbjct: 22  PPTHTDVPARV---LVRARHLRSRD-------RAAGPYAVDQAERGARRPCQAVELVTET 71

Query: 166 DGRKERAQEDLRIRVAALGQQRQPAARLLLHFGQALVLQQV-GQPHALVAHRVAERQVGR 224
               +R Q+D  +   A       ++   L  G+  V + V     + V H V    +G 
Sbjct: 72  FDVVKRVQDDHVVATQAPFHGGSQSSTQCLLTGRIAVHRWVLCAQDSCVVHHVHRAALGS 131

Query: 225 DVKALRRLGVGAAVQRLGLPAIVVVLLAARRRPVQRPQQQRQRGRPHAPPRRRRPHGCAL 284
              A          Q    PA     LAA R+P +  ++   R RP A   R+ P GC  
Sbjct: 132 QRHA----------QLFSTPA-----LAAVRQPAKHHERHPLRERPLATALRQLP-GCTR 175

Query: 285 SRCAPR----SPPTLGARRPRC 302
            R  P      P +L   RP C
Sbjct: 176 LRRKPEVQTALPVSLDFYRPSC 197


>gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo
           sapiens]
          Length = 404

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 57/232 (24%), Positives = 82/232 (35%), Gaps = 34/232 (14%)

Query: 91  CSISHWAQILVTEERKRGGGQV--PELHGDAEVVVQGELVAVQHLRPGEAVGLHERRAAG 148
           C  +   Q+    +  + GG+V  P LH     + +G  V   H  PG+      RR  G
Sbjct: 113 CPPAAGGQVAARGKEPKPGGRVTLPALH-----LPKG--VCPHH--PGKGSAGPSRRGRG 163

Query: 149 AHGLAQRAARVDGPVETDGRKERAQEDLRIRVAALGQQRQPAA---RLLLHFGQALVLQQ 205
                 R + ++   E+   +  A  +   R    G+    A+    L  H  ++L+L+ 
Sbjct: 164 QRAKGFRGSEMNS--ESRRGQTAAGREKHPRAGCSGEGETGASYPEELHGHEAESLLLEA 221

Query: 206 VGQ-PHALVAHRV------AERQVGRDV--KALRRLGVGAAVQRLGLPAIVVVLLAARRR 256
           +    H    H V         QVG     + L   G GAA+      A        RRR
Sbjct: 222 LDDLAHQAALHAVRLDGDEGALQVGHGPAGRELEGPGGGAALGEQRAGATTTPGSRRRRR 281

Query: 257 PVQRPQQQRQRGRPHAPPRRRRPHGCALSRCAPRSPPTLGARRPRCSGVRPR 308
              R       G P  P RR  P         P  P   G + PR +G RPR
Sbjct: 282 GAGRSAGWPHPGGPSRPTRRNAP---------PARPDAAGEQCPRPAGARPR 324


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,035,822
Number of Sequences: 37866
Number of extensions: 641075
Number of successful extensions: 3515
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 3427
Number of HSP's gapped (non-prelim): 115
length of query: 309
length of database: 18,247,518
effective HSP length: 102
effective length of query: 207
effective length of database: 14,385,186
effective search space: 2977733502
effective search space used: 2977733502
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.