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Search of human proteins with 239743799
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743799 PREDICTED: similar to hCG1794531 [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743799 PREDICTED: similar to hCG1794531 [Homo sapiens] 616 e-177
gi|239743758 PREDICTED: similar to hCG1794531 [Homo sapiens] 616 e-177
gi|239749583 PREDICTED: similar to hCG1794531 [Homo sapiens] 512 e-145
gi|6005737 cytochrome P450, family 4, subfamily F, polypeptide 8... 60 2e-09
gi|193083180 cytochrome P450 family 4 subfamily F polypeptide 11... 60 2e-09
gi|193083178 cytochrome P450 family 4 subfamily F polypeptide 11... 60 2e-09
gi|13435391 cytochrome P450, family 4, subfamily F, polypeptide ... 58 1e-08
gi|119220562 cytochrome P450, family 4, subfamily F, polypeptide... 58 1e-08
gi|150036266 cytochrome P450, family 4, subfamily F, polypeptide... 52 8e-07
gi|239757171 PREDICTED: similar to cytochrome P450, family 4, su... 44 1e-04
gi|239751683 PREDICTED: similar to cytochrome P450, family 4, su... 44 1e-04
gi|239746187 PREDICTED: similar to cytochrome P450, family 4, su... 44 1e-04
gi|158138530 cytochrome P450, family 4, subfamily F, polypeptide... 37 0.016
gi|226693407 TBC1 domain family, member 3H [Homo sapiens] 30 3.3
gi|14149985 TBC1 domain family, member 3F [Homo sapiens] 30 3.3
gi|183583565 TBC1 domain family, member 3 [Homo sapiens] 30 3.3
gi|183583567 TBC1 domain family, member 3E [Homo sapiens] 30 3.3
gi|149999613 TBC1 domain family, member 3B [Homo sapiens] 30 3.3
gi|183583563 TBC1 domain family, member 3D [Homo sapiens] 30 3.3
gi|90577185 TBC1 domain family member 3C [Homo sapiens] 30 3.3
gi|157502205 TBC1 domain family, member 3G [Homo sapiens] 30 3.3
gi|222831587 tRNA methyltransferase 61 homolog B [Homo sapiens] 29 4.3
gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens] 28 7.4
gi|55956904 mitogen-activated protein kinase kinase kinase 4 iso... 28 7.4
gi|55956902 mitogen-activated protein kinase kinase kinase 4 iso... 28 7.4
gi|75750492 phosphatidylinositol glycan, class W [Homo sapiens] 28 7.4
>gi|239743799 PREDICTED: similar to hCG1794531 [Homo sapiens]
Length = 295
Score = 616 bits (1588), Expect = e-177
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MFHLIAKISDRLHRKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPWISATFGETCH 60
MFHLIAKISDRLHRKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPWISATFGETCH
Sbjct: 1 MFHLIAKISDRLHRKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPWISATFGETCH 60
Query: 61 VLGGLRHRVRPMGLEDPRAGPATWGTTLDTIILERHCTLTSQGVDDFLNAKATFKIFDFS 120
VLGGLRHRVRPMGLEDPRAGPATWGTTLDTIILERHCTLTSQGVDDFLNAKATFKIFDFS
Sbjct: 61 VLGGLRHRVRPMGLEDPRAGPATWGTTLDTIILERHCTLTSQGVDDFLNAKATFKIFDFS 120
Query: 121 DAFVLSKVGFSGILIQKDENKEELSDKDIYMEAGIFVSANRGPGVDYCGNRGLSIQGHGT 180
DAFVLSKVGFSGILIQKDENKEELSDKDIYMEAGIFVSANRGPGVDYCGNRGLSIQGHGT
Sbjct: 121 DAFVLSKVGFSGILIQKDENKEELSDKDIYMEAGIFVSANRGPGVDYCGNRGLSIQGHGT 180
Query: 181 QCMGTVQPLVLKQPRDPSLPGCHLGYDSTASGLYWILTFTRLNFTLSSDSHLIVYPMESL 240
QCMGTVQPLVLKQPRDPSLPGCHLGYDSTASGLYWILTFTRLNFTLSSDSHLIVYPMESL
Sbjct: 181 QCMGTVQPLVLKQPRDPSLPGCHLGYDSTASGLYWILTFTRLNFTLSSDSHLIVYPMESL 240
Query: 241 GSKWVTVMYASPFQQLGQCFLCAYRNLSYCAEESGPFGECGSQVLAGTSKWLKDH 295
GSKWVTVMYASPFQQLGQCFLCAYRNLSYCAEESGPFGECGSQVLAGTSKWLKDH
Sbjct: 241 GSKWVTVMYASPFQQLGQCFLCAYRNLSYCAEESGPFGECGSQVLAGTSKWLKDH 295
>gi|239743758 PREDICTED: similar to hCG1794531 [Homo sapiens]
Length = 295
Score = 616 bits (1588), Expect = e-177
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MFHLIAKISDRLHRKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPWISATFGETCH 60
MFHLIAKISDRLHRKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPWISATFGETCH
Sbjct: 1 MFHLIAKISDRLHRKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPWISATFGETCH 60
Query: 61 VLGGLRHRVRPMGLEDPRAGPATWGTTLDTIILERHCTLTSQGVDDFLNAKATFKIFDFS 120
VLGGLRHRVRPMGLEDPRAGPATWGTTLDTIILERHCTLTSQGVDDFLNAKATFKIFDFS
Sbjct: 61 VLGGLRHRVRPMGLEDPRAGPATWGTTLDTIILERHCTLTSQGVDDFLNAKATFKIFDFS 120
Query: 121 DAFVLSKVGFSGILIQKDENKEELSDKDIYMEAGIFVSANRGPGVDYCGNRGLSIQGHGT 180
DAFVLSKVGFSGILIQKDENKEELSDKDIYMEAGIFVSANRGPGVDYCGNRGLSIQGHGT
Sbjct: 121 DAFVLSKVGFSGILIQKDENKEELSDKDIYMEAGIFVSANRGPGVDYCGNRGLSIQGHGT 180
Query: 181 QCMGTVQPLVLKQPRDPSLPGCHLGYDSTASGLYWILTFTRLNFTLSSDSHLIVYPMESL 240
QCMGTVQPLVLKQPRDPSLPGCHLGYDSTASGLYWILTFTRLNFTLSSDSHLIVYPMESL
Sbjct: 181 QCMGTVQPLVLKQPRDPSLPGCHLGYDSTASGLYWILTFTRLNFTLSSDSHLIVYPMESL 240
Query: 241 GSKWVTVMYASPFQQLGQCFLCAYRNLSYCAEESGPFGECGSQVLAGTSKWLKDH 295
GSKWVTVMYASPFQQLGQCFLCAYRNLSYCAEESGPFGECGSQVLAGTSKWLKDH
Sbjct: 241 GSKWVTVMYASPFQQLGQCFLCAYRNLSYCAEESGPFGECGSQVLAGTSKWLKDH 295
>gi|239749583 PREDICTED: similar to hCG1794531 [Homo sapiens]
Length = 277
Score = 512 bits (1319), Expect = e-145
Identities = 247/250 (98%), Positives = 248/250 (99%)
Query: 1 MFHLIAKISDRLHRKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPWISATFGETCH 60
MFHLIAKISDRLHRKKWL VLNDQKKSRSSKKTIKENSKRSPANIYRWPW SATFGETCH
Sbjct: 1 MFHLIAKISDRLHRKKWLTVLNDQKKSRSSKKTIKENSKRSPANIYRWPWTSATFGETCH 60
Query: 61 VLGGLRHRVRPMGLEDPRAGPATWGTTLDTIILERHCTLTSQGVDDFLNAKATFKIFDFS 120
VLGGLRHRVRPMGLEDPRAGPATWGTTLDTIILERHCTLTSQGVDDFLNAKATFKIFDFS
Sbjct: 61 VLGGLRHRVRPMGLEDPRAGPATWGTTLDTIILERHCTLTSQGVDDFLNAKATFKIFDFS 120
Query: 121 DAFVLSKVGFSGILIQKDENKEELSDKDIYMEAGIFVSANRGPGVDYCGNRGLSIQGHGT 180
DAFVLSKVGFSGILIQ+DENKEELSDKDIYMEAGIFVSANRGPGVDYCGNRGLSIQGHGT
Sbjct: 121 DAFVLSKVGFSGILIQEDENKEELSDKDIYMEAGIFVSANRGPGVDYCGNRGLSIQGHGT 180
Query: 181 QCMGTVQPLVLKQPRDPSLPGCHLGYDSTASGLYWILTFTRLNFTLSSDSHLIVYPMESL 240
QCMGTVQPLVLKQPRDPSLPGCHLGYDSTASGLYWILTFTRLNFTLSSDSHLIVYPMESL
Sbjct: 181 QCMGTVQPLVLKQPRDPSLPGCHLGYDSTASGLYWILTFTRLNFTLSSDSHLIVYPMESL 240
Query: 241 GSKWVTVMYA 250
GSKWVTVMYA
Sbjct: 241 GSKWVTVMYA 250
>gi|6005737 cytochrome P450, family 4, subfamily F, polypeptide 8
[Homo sapiens]
Length = 520
Score = 60.5 bits (145), Expect = 2e-09
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 10/69 (14%)
Query: 89 DTIILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILIQKDENKEELSDKD 148
D +I ER TLTSQGVDDFL AKA K DF D +LS +D+N +ELSD+D
Sbjct: 268 DAVIQERRRTLTSQGVDDFLQAKAKSKTLDFIDVLLLS----------EDKNGKELSDED 317
Query: 149 IYMEAGIFV 157
I EA F+
Sbjct: 318 IRAEADTFM 326
>gi|193083180 cytochrome P450 family 4 subfamily F polypeptide 11
[Homo sapiens]
Length = 524
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 89 DTIILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILIQKDENKEELSDKD 148
D +I ER CTL +QG+DDFL KA K DF D +LS KDE+ +ELSD+D
Sbjct: 268 DAVIQERRCTLPTQGIDDFLKNKAKSKTLDFIDVLLLS----------KDEDGKELSDED 317
Query: 149 IYMEAGIFV 157
I EA F+
Sbjct: 318 IRAEADTFM 326
>gi|193083178 cytochrome P450 family 4 subfamily F polypeptide 11
[Homo sapiens]
Length = 524
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 89 DTIILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILIQKDENKEELSDKD 148
D +I ER CTL +QG+DDFL KA K DF D +LS KDE+ +ELSD+D
Sbjct: 268 DAVIQERRCTLPTQGIDDFLKNKAKSKTLDFIDVLLLS----------KDEDGKELSDED 317
Query: 149 IYMEAGIFV 157
I EA F+
Sbjct: 318 IRAEADTFM 326
>gi|13435391 cytochrome P450, family 4, subfamily F, polypeptide 2
[Homo sapiens]
Length = 520
Score = 57.8 bits (138), Expect = 1e-08
Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 89 DTIILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILIQKDENKEELSDKD 148
D +I ER TL SQGVDDFL AKA K DF D +LS KDE+ ++LSD+D
Sbjct: 268 DAVIQERRRTLPSQGVDDFLQAKAKSKTLDFIDVLLLS----------KDEDGKKLSDED 317
Query: 149 IYMEAGIFV 157
I EA F+
Sbjct: 318 IRAEADTFM 326
>gi|119220562 cytochrome P450, family 4, subfamily F, polypeptide 3
[Homo sapiens]
Length = 520
Score = 57.8 bits (138), Expect = 1e-08
Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 89 DTIILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILIQKDENKEELSDKD 148
D +I ER TL SQGVDDFL AKA K DF D +LS KDE+ ++LSD+D
Sbjct: 268 DAVIQERRRTLPSQGVDDFLQAKAKSKTLDFIDVLLLS----------KDEDGKKLSDED 317
Query: 149 IYMEAGIFV 157
I EA F+
Sbjct: 318 IRAEADTFM 326
>gi|150036266 cytochrome P450, family 4, subfamily F, polypeptide 12
[Homo sapiens]
Length = 524
Score = 51.6 bits (122), Expect = 8e-07
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 89 DTIILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILIQKDENKEELSDKD 148
D +I ER TL +QG+DDF KA K DF D +LS KDE+ + LSD+D
Sbjct: 268 DAVIRERRRTLPTQGIDDFFKDKAKSKTLDFIDVLLLS----------KDEDGKALSDED 317
Query: 149 IYMEAGIFV 157
I EA F+
Sbjct: 318 IRAEADTFM 326
>gi|239757171 PREDICTED: similar to cytochrome P450, family 4,
subfamily F, polypeptide 2 [Homo sapiens]
Length = 190
Score = 44.3 bits (103), Expect = 1e-04
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 89 DTIILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILI 135
D I E+ TL SQGVDDFL AKA K DF D ++SK G ++
Sbjct: 119 DAAIQEKRHTLPSQGVDDFLQAKAKSKTLDFIDVLLISKAMTPGPVV 165
>gi|239751683 PREDICTED: similar to cytochrome P450, family 4,
subfamily F, polypeptide 2 [Homo sapiens]
Length = 190
Score = 44.3 bits (103), Expect = 1e-04
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 89 DTIILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILI 135
D I E+ TL SQGVDDFL AKA K DF D ++SK G ++
Sbjct: 119 DAAIQEKRHTLPSQGVDDFLQAKAKSKTLDFIDVLLISKAMTPGPVV 165
>gi|239746187 PREDICTED: similar to cytochrome P450, family 4,
subfamily F, polypeptide 2 [Homo sapiens]
Length = 190
Score = 44.3 bits (103), Expect = 1e-04
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 89 DTIILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILI 135
D I E+ TL SQGVDDFL AKA K DF D ++SK G ++
Sbjct: 119 DAAIQEKRHTLPSQGVDDFLQAKAKSKTLDFIDVLLISKAMTPGPVV 165
>gi|158138530 cytochrome P450, family 4, subfamily F, polypeptide 22
[Homo sapiens]
Length = 531
Score = 37.4 bits (85), Expect = 0.016
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 91 IILERHCTLTSQGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILIQKDENKEELSDKDIY 150
+I ER L QG + +L AK K DF D +L+ +DE+ +ELSD+DI
Sbjct: 278 VIQERRRALRQQGAEAWLKAKQG-KTLDFIDV----------LLLARDEDGKELSDEDIR 326
Query: 151 MEAGIFV 157
EA F+
Sbjct: 327 AEADTFM 333
>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 14 RKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPW 50
+ KW+ +L D +K +SS+K I K P NI W
Sbjct: 75 KSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMW 111
>gi|14149985 TBC1 domain family, member 3F [Homo sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 14 RKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPW 50
+ KW+ +L D +K +SS+K I K P NI W
Sbjct: 75 KSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMW 111
>gi|183583565 TBC1 domain family, member 3 [Homo sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 14 RKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPW 50
+ KW+ +L D +K +SS+K I K P NI W
Sbjct: 75 KSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMW 111
>gi|183583567 TBC1 domain family, member 3E [Homo sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 14 RKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPW 50
+ KW+ +L D +K +SS+K I K P NI W
Sbjct: 75 KSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMW 111
>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 14 RKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPW 50
+ KW+ +L D +K +SS+K I K P NI W
Sbjct: 75 KSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMW 111
>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 14 RKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPW 50
+ KW+ +L D +K +SS+K I K P NI W
Sbjct: 75 KSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMW 111
>gi|90577185 TBC1 domain family member 3C [Homo sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 14 RKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPW 50
+ KW+ +L D +K +SS+K I K P NI W
Sbjct: 75 KSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMW 111
>gi|157502205 TBC1 domain family, member 3G [Homo sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 14 RKKWLKVLNDQKKSRSSKKTIKENSKRSPANIYRWPW 50
+ KW+ +L D +K +SS+K I K P NI W
Sbjct: 75 KSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMW 111
>gi|222831587 tRNA methyltransferase 61 homolog B [Homo sapiens]
Length = 477
Score = 29.3 bits (64), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 161 RGPGVDYCGNRGLSIQGHGTQCMGTVQPLVLKQPRDPSLP 200
+ PG + C + LSI GT C+ +++ L L R+ S P
Sbjct: 60 KAPGAESCPSLPLSISDIGTGCLSSLENLRLPTLREESSP 99
>gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens]
Length = 814
Score = 28.5 bits (62), Expect = 7.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 74 LEDPRAGPATWGTTLDTIILERHCTLTSQGVDDF--LNAKATFK 115
L+ AGP T GTT+DT LE +T D +N+ T K
Sbjct: 744 LKKAEAGPVTLGTTVDTTHLENPKAVTPASAPDCTPVNSATTLK 787
>gi|55956904 mitogen-activated protein kinase kinase kinase 4
isoform a [Homo sapiens]
Length = 1608
Score = 28.5 bits (62), Expect = 7.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 102 QGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILIQ 136
Q + D +N TFK+ S AFV + GF+G ++
Sbjct: 289 QAIPDIINEILTFKVDYGSFAFVRDRAGFNGTSVE 323
>gi|55956902 mitogen-activated protein kinase kinase kinase 4
isoform b [Homo sapiens]
Length = 1558
Score = 28.5 bits (62), Expect = 7.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 102 QGVDDFLNAKATFKIFDFSDAFVLSKVGFSGILIQ 136
Q + D +N TFK+ S AFV + GF+G ++
Sbjct: 289 QAIPDIINEILTFKVDYGSFAFVRDRAGFNGTSVE 323
>gi|75750492 phosphatidylinositol glycan, class W [Homo sapiens]
Length = 504
Score = 28.5 bits (62), Expect = 7.4
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 204 LGYDS--TASGLYWILTFTRLNFTLSSDSHLIVYPMESLGSKWVTVMYASPFQQLGQCFL 261
+GY T G++W FT + L + LI++P L W+ + + QL F
Sbjct: 223 IGYQEHLTEYGVHWNFFFTIIVVKLITPLLLIIFP---LNKSWIIALGITVLYQLALDFT 279
Query: 262 CAYRNLSYCAEESG 275
R + Y + SG
Sbjct: 280 SLKRLILYGTDGSG 293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,938,356
Number of Sequences: 37866
Number of extensions: 537798
Number of successful extensions: 1169
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 34
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.