Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC646575 Sequence: fasta or formatted (190aa) NCBI GI: 239757171
Description:

PREDICTED: similar to cytochrome P450, family 4, subfamily F, polypeptide 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {190aa} PREDICTED: similar to cytochrome P450, family 4, subfamily F, pol...
alt mRNA {190aa} PREDICTED: similar to cytochrome P450, family 4, subfamily F, pol...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         15           2
 C cysteine            2.6          5           1
 D aspartate           6.3         12           2
 E glutamate           3.7          7           1
 F phenylalanine       6.3         12           1
 G glycine             3.7          7           1
 H histidine           5.8         11           1
 I isoleucine          4.2          8           1
 K lysine              6.8         13           1
 L leucine            12.1         23           2
 M methionine          4.7          9           1
 N asparagine          3.2          6           1
 P proline             3.7          7           1
 Q glutamine           5.3         10           2
 R arginine            3.7          7           1
 S serine              8.4         16           2
 T threonine           4.7          9           2
 V valine              4.2          8           2
 W tryptophan          0.5          1           1
 Y tyrosine            2.1          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to cytochrome P450, family 4, su... 
LOC646575             1.000   PREDICTED: similar to cytochrome P450, family 4, su...
LOC646575             1.000   PREDICTED: similar to cytochrome P450, family 4, su...
CYP4F2                0.665   cytochrome P450, family 4, subfamily F, polypeptide ...
CYP4F3                0.654   cytochrome P450, family 4, subfamily F, polypeptide...
CYP4F11               0.613   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F11               0.613   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F8                0.602   cytochrome P450, family 4, subfamily F, polypeptide 8...
CYP4F12               0.588   cytochrome P450, family 4, subfamily F, polypeptide...
CYP4F22               0.429   cytochrome P450, family 4, subfamily F, polypeptide...
CYP4A11               0.247   cytochrome P450, family 4, subfamily A, polypeptide...
CYP4A22               0.223   cytochrome P450, family 4, subfamily A, polypeptide ...
CYP4X1                0.214   cytochrome P450, family 4, subfamily X, polypeptide ...
CYP4B1                0.212   cytochrome P450, family 4, subfamily B, polypeptide...
CYP4B1                0.203   cytochrome P450, family 4, subfamily B, polypeptide...
CYP4Z1                0.168   cytochrome P450 4Z1 
CYP4V2                0.091   cytochrome P450, family 4, subfamily v, polypeptide...
LOC644587             0.052   PREDICTED: similar to hCG1794531 
LOC100132939          0.052   PREDICTED: similar to hCG1794531 
LOC644587             0.052   PREDICTED: similar to hCG1794531 
LILRB2                0.019   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB2                0.019   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA1                0.019   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRA2                0.016   leukocyte immunoglobulin-like receptor, subfamily A...
LILRA2                0.016   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRA3                0.014   leukocyte immunoglobulin-like receptor, subfamily A ...
IGSF1                 0.014   immunoglobulin superfamily, member 1 isoform 1 [Homo...
LOC100293904          0.011   PREDICTED: similar to leucocyte immunoglobulin-like...
LILRB1                0.011   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.011   leukocyte immunoglobulin-like receptor, subfamily B...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press