Guide to the Human Genome
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Name: LOC100132939 Sequence: fasta or formatted (295aa) NCBI GI: 239743799
Description:

PREDICTED: similar to hCG1794531

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         15           1
 C cysteine            3.1          9           1
 D aspartate           5.4         16           2
 E glutamate           4.1         12           2
 F phenylalanine       4.7         14           1
 G glycine             8.8         26           2
 H histidine           3.1          9           1
 I isoleucine          5.1         15           2
 K lysine              6.8         20           2
 L leucine            10.2         30           1
 M methionine          2.0          6           1
 N asparagine          3.1          9           1
 P proline             4.4         13           1
 Q glutamine           3.7         11           2
 R arginine            5.1         15           1
 S serine              9.2         27           2
 T threonine           6.1         18           2
 V valine              4.7         14           1
 W tryptophan          2.4          7           1
 Y tyrosine            3.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1794531 
LOC644587             1.000   PREDICTED: similar to hCG1794531 
LOC644587             0.824   PREDICTED: similar to hCG1794531 
CYP4F8                0.059   cytochrome P450, family 4, subfamily F, polypeptide 8...
CYP4F11               0.059   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F11               0.059   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F2                0.056   cytochrome P450, family 4, subfamily F, polypeptide ...
CYP4F3                0.056   cytochrome P450, family 4, subfamily F, polypeptide...
CYP4F12               0.046   cytochrome P450, family 4, subfamily F, polypeptide...
LOC646575             0.032   PREDICTED: similar to cytochrome P450, family 4, su...
LOC646575             0.032   PREDICTED: similar to cytochrome P450, family 4, su...
LOC646575             0.032   PREDICTED: similar to cytochrome P450, family 4, su...
CYP4F22               0.020   cytochrome P450, family 4, subfamily F, polypeptide...
TBC1D3H               0.008   TBC1 domain family, member 3H 
TBC1D3F               0.008   TBC1 domain family, member 3F 
TBC1D3                0.008   TBC1 domain family, member 3 
TBC1D3E               0.008   TBC1 domain family, member 3E 
TBC1D3B               0.008   TBC1 domain family, member 3B 
TBC1D3D               0.008   TBC1 domain family, member 3D 
TBC1D3C               0.008   TBC1 domain family member 3C 
TBC1D3G               0.008   TBC1 domain family, member 3G 
TRMT61B               0.007   tRNA methyltransferase 61 homolog B 
AFAP1L2               0.005   KIAA1914 protein isoform 2 
MAP3K4                0.005   mitogen-activated protein kinase kinase kinase 4 iso...
MAP3K4                0.005   mitogen-activated protein kinase kinase kinase 4 iso...
PIGW                  0.005   phosphatidylinositol glycan, class W 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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