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Search of human proteins with 239743756
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform
2 [Homo sapiens]
(1207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2... 2465 0.0
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1... 1903 0.0
gi|47519929 cell recognition molecule CASPR3 [Homo sapiens] 1868 0.0
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap... 1378 0.0
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap... 1256 0.0
gi|18640734 contactin associated protein-like 5 [Homo sapiens] 1074 0.0
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi... 936 0.0
gi|239743797 PREDICTED: similar to cell recognition molecule CAS... 746 0.0
gi|239743729 PREDICTED: similar to contactin associated protein-... 723 0.0
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 708 0.0
gi|169184330 PREDICTED: novel protein similar to contactin assoc... 550 e-156
gi|239758135 PREDICTED: similar to cell recognition molecule CAS... 265 2e-70
gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens] 166 9e-41
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens] 164 5e-40
gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens] 164 6e-40
gi|239752499 PREDICTED: similar to cell recognition molecule Cas... 146 1e-34
gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens] 135 2e-31
gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens] 117 9e-26
gi|167830475 milk fat globule-EGF factor 8 protein isoform a [Ho... 90 1e-17
gi|105990535 coagulation factor V precursor [Homo sapiens] 86 2e-16
gi|62420886 discoidin domain receptor family, member 2 precursor... 84 6e-16
gi|62420884 discoidin domain receptor family, member 2 precursor... 84 6e-16
gi|38327632 discoidin domain receptor family, member 1 isoform b... 79 3e-14
gi|83977452 discoidin domain receptor family, member 1 isoform c... 79 3e-14
gi|83977450 discoidin domain receptor family, member 1 isoform a... 79 3e-14
gi|54873613 agrin [Homo sapiens] 78 6e-14
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 78 6e-14
gi|10518506 coagulation factor VIII isoform b precursor [Homo sa... 77 8e-14
gi|4503647 coagulation factor VIII isoform a precursor [Homo sap... 77 8e-14
gi|41872572 neuropilin 2 isoform 3 precursor [Homo sapiens] 76 2e-13
>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
[Homo sapiens]
Length = 1207
Score = 2465 bits (6388), Expect = 0.0
Identities = 1207/1207 (100%), Positives = 1207/1207 (100%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR 60
MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR
Sbjct: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW
Sbjct: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK
Sbjct: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK
Sbjct: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD
Sbjct: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
Query: 301 SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV 360
SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV
Sbjct: 301 SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV 360
Query: 361 SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFV 420
SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFV
Sbjct: 361 SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFV 420
Query: 421 LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVA 480
LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVA
Sbjct: 421 LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVA 480
Query: 481 VLIDSGDTYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL 540
VLIDSGDTYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL
Sbjct: 481 VLIDSGDTYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL 540
Query: 541 QIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGN 600
QIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGN
Sbjct: 541 QIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGN 600
Query: 601 PSGLYYIDADGSGPLGPFLVYCNMTDSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAA 660
PSGLYYIDADGSGPLGPFLVYCNMTDSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAA
Sbjct: 601 PSGLYYIDADGSGPLGPFLVYCNMTDSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAA 660
Query: 661 GAGQLRAAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQK 720
GAGQLRAAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQK
Sbjct: 661 GAGQLRAAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQK 720
Query: 721 CTCGLEGNCIDSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTLG 780
CTCGLEGNCIDSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTLG
Sbjct: 721 CTCGLEGNCIDSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTLG 780
Query: 781 PLLCRGDKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFIR 840
PLLCRGDKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFIR
Sbjct: 781 PLLCRGDKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFIR 840
Query: 841 IELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQP 900
IELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQP
Sbjct: 841 IELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQP 900
Query: 901 APADGHVRLQLNSQLFIEISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREM 960
APADGHVRLQLNSQLFIEISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREM
Sbjct: 901 APADGHVRLQLNSQLFIEISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREM 960
Query: 961 ITLSFRTTRSPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADG 1020
ITLSFRTTRSPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADG
Sbjct: 961 ITLSFRTTRSPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADG 1020
Query: 1021 QLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAAT 1080
QLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAAT
Sbjct: 1021 QLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAAT 1080
Query: 1081 SGFTGCLSAVRFGRAAPLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLA 1140
SGFTGCLSAVRFGRAAPLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLA
Sbjct: 1081 SGFTGCLSAVRFGRAAPLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLA 1140
Query: 1141 GGAGRSGPVDEGEPLVNADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESK 1200
GGAGRSGPVDEGEPLVNADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESK
Sbjct: 1141 GGAGRSGPVDEGEPLVNADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESK 1200
Query: 1201 VSKKEEC 1207
VSKKEEC
Sbjct: 1201 VSKKEEC 1207
>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
[Homo sapiens]
Length = 1288
Score = 1903 bits (4930), Expect = 0.0
Identities = 917/918 (99%), Positives = 917/918 (99%), Gaps = 1/918 (0%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR 60
MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR
Sbjct: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW
Sbjct: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK
Sbjct: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK
Sbjct: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD
Sbjct: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
Query: 301 SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV 360
SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV
Sbjct: 301 SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV 360
Query: 361 SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFV 420
SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFV
Sbjct: 361 SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFV 420
Query: 421 LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVA 480
LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVA
Sbjct: 421 LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVA 480
Query: 481 VLIDSGDTYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL 540
VLIDSGDTYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL
Sbjct: 481 VLIDSGDTYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL 540
Query: 541 QIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGN 600
QIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGN
Sbjct: 541 QIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGN 600
Query: 601 PSGLYYIDADGSGPLGPFLVYCNMT-DSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYA 659
PSGLYYIDADGSGPLGPFLVYCNMT DSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYA
Sbjct: 601 PSGLYYIDADGSGPLGPFLVYCNMTADSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYA 660
Query: 660 AGAGQLRAAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQ 719
AGAGQLRAAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQ
Sbjct: 661 AGAGQLRAAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQ 720
Query: 720 KCTCGLEGNCIDSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTL 779
KCTCGLEGNCIDSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTL
Sbjct: 721 KCTCGLEGNCIDSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTL 780
Query: 780 GPLLCRGDKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFI 839
GPLLCRGDKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFI
Sbjct: 781 GPLLCRGDKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFI 840
Query: 840 RIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQ 899
RIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQ
Sbjct: 841 RIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQ 900
Query: 900 PAPADGHVRLQLNSQLFI 917
PAPADGHVRLQLNSQLFI
Sbjct: 901 PAPADGHVRLQLNSQLFI 918
Score = 561 bits (1446), Expect = e-159
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 918 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYV 977
EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYV
Sbjct: 999 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYV 1058
Query: 978 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1037
SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE
Sbjct: 1059 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1118
Query: 1038 VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1097
VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP
Sbjct: 1119 VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1178
Query: 1098 LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 1157
LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN
Sbjct: 1179 LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 1238
Query: 1158 ADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 1207
ADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC
Sbjct: 1239 ADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 1288
Score = 48.5 bits (114), Expect = 4e-05
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 24/261 (9%)
Query: 334 ENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVS 393
E+L + +T+ + H +G + + +F + SYL P GE
Sbjct: 757 EHLPVTQIVMTDTGQPHSEADYTLGPLLCRGDKSFWNSASFNTETSYLHFPAFHGELTAD 816
Query: 394 VTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSL-FQAGQSPRNVTAGAG--LND 450
V F F+T +G +F E G F+ +++ F G P VT + ND
Sbjct: 817 VCFFFKTTVSSG--VFME-NLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFND 873
Query: 451 GQWHSVSFSAKWSHMNVVVDD-DTAVQPLVA---VLIDSGDTYYFGGCLGNSSGSGCKSP 506
QWH V ++ VD +QP A V + + GG G
Sbjct: 874 NQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFIGGTATRQRG------ 927
Query: 507 LGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSW 566
F GC+R + + A+D L ++ + + C C +GG C +
Sbjct: 928 ---FLGCIRSLQLNGVALD--LEERATVTPGVE---PGCAGHCSTYGHLCRNGGRCREKR 979
Query: 567 DTFSCDCLGTGYTGETCHSSL 587
+CDC + Y G C + +
Sbjct: 980 RGVTCDCAFSAYDGPFCSNEI 1000
Score = 33.5 bits (75), Expect = 1.3
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 212 FKAMQSNGILLHREGQHGNHITLEL-IKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQ 270
FK S+G+ + G + I +EL ++ F + GN T+ T +D
Sbjct: 821 FKTTVSSGVFMENLGIT-DFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTP-----FNDN 874
Query: 271 HWHSVLIELLDTQVNFTVDKHTHHFQ-AKGDSS-NLDLNFEISFGGILSPGRSRAFTRKS 328
WH V E + VD+ Q A D L LN ++ GG A ++
Sbjct: 875 QWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFIGGT-------ATRQRG 927
Query: 329 FHGCLENLYYNGV 341
F GC+ +L NGV
Sbjct: 928 FLGCIRSLQLNGV 940
>gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]
Length = 1288
Score = 1868 bits (4840), Expect = 0.0
Identities = 899/918 (97%), Positives = 908/918 (98%), Gaps = 1/918 (0%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR 60
MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCD+PLASALPRSSFSSSSELSSSHGPGFSR
Sbjct: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW
Sbjct: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK
Sbjct: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
SEVVYFDGQSALLY LDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK
Sbjct: 181 SEVVYFDGQSALLYRLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD
Sbjct: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
Query: 301 SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV 360
SS LDLNFEISFGGI +PGRSRAF RKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV
Sbjct: 301 SSYLDLNFEISFGGIPTPGRSRAFRRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV 360
Query: 361 SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFV 420
SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGEL+RGSGSFV
Sbjct: 361 SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELRRGSGSFV 420
Query: 421 LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVA 480
LFLKDGKLKLSLFQ GQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVA
Sbjct: 421 LFLKDGKLKLSLFQPGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVA 480
Query: 481 VLIDSGDTYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL 540
VLIDSGDTYYFGGCL NSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL
Sbjct: 481 VLIDSGDTYYFGGCLDNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL 540
Query: 541 QIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGN 600
QIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGN
Sbjct: 541 QIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGN 600
Query: 601 PSGLYYIDADGSGPLGPFLVYCNMT-DSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYA 659
PSGLYYIDADGSGPLGPFLVYCNMT D+AWTVV+HGGPDAVTLRGAPSGHP SAVSFAYA
Sbjct: 601 PSGLYYIDADGSGPLGPFLVYCNMTADAAWTVVQHGGPDAVTLRGAPSGHPRSAVSFAYA 660
Query: 660 AGAGQLRAAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQ 719
AGAGQLR+AVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQ
Sbjct: 661 AGAGQLRSAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQ 720
Query: 720 KCTCGLEGNCIDSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTL 779
KCTCGLEGNCIDSQYYCNCDAG+NEWTSDTIVLSQKEHLPVTQIVMTD G+PHSEA YTL
Sbjct: 721 KCTCGLEGNCIDSQYYCNCDAGRNEWTSDTIVLSQKEHLPVTQIVMTDAGRPHSEAAYTL 780
Query: 780 GPLLCRGDKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFI 839
GPLLCRGD+SFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFI
Sbjct: 781 GPLLCRGDQSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFI 840
Query: 840 RIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQ 899
RIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQ
Sbjct: 841 RIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQ 900
Query: 900 PAPADGHVRLQLNSQLFI 917
PAPADGHVRLQLNSQLFI
Sbjct: 901 PAPADGHVRLQLNSQLFI 918
Score = 553 bits (1426), Expect = e-157
Identities = 285/290 (98%), Positives = 288/290 (99%)
Query: 918 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYV 977
EISAYFATGSSMTYHFQEHYTLSENSSSLVSSL+RDVTLTREMITLSFRTTR+PSLLLYV
Sbjct: 999 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 1058
Query: 978 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1037
SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE
Sbjct: 1059 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1118
Query: 1038 VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1097
VNQS KKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP
Sbjct: 1119 VNQSTKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1178
Query: 1098 LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 1157
LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGP DEGEPLVN
Sbjct: 1179 LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPADEGEPLVN 1238
Query: 1158 ADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 1207
ADRRDSAV+GGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC
Sbjct: 1239 ADRRDSAVIGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 1288
Score = 51.2 bits (121), Expect = 6e-06
Identities = 60/261 (22%), Positives = 96/261 (36%), Gaps = 24/261 (9%)
Query: 334 ENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVS 393
E+L + +T+ + H +G + Q +F + SYL P GE
Sbjct: 757 EHLPVTQIVMTDAGRPHSEAAYTLGPLLCRGDQSFWNSASFNTETSYLHFPAFHGELTAD 816
Query: 394 VTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSL-FQAGQSPRNVTAGAG--LND 450
V F F+T +G +F E G F+ +++ F G P VT + ND
Sbjct: 817 VCFFFKTTVSSG--VFME-NLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFND 873
Query: 451 GQWHSVSFSAKWSHMNVVVDD-DTAVQPLVA---VLIDSGDTYYFGGCLGNSSGSGCKSP 506
QWH V ++ VD +QP A V + + GG G
Sbjct: 874 NQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFIGGTATRQRG------ 927
Query: 507 LGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSW 566
F GC+R + + A+D L ++ + + C C +GG C +
Sbjct: 928 ---FLGCIRSLQLNGVALD--LEERATVTPGVE---PGCAGHCSTYGHLCRNGGRCREKR 979
Query: 567 DTFSCDCLGTGYTGETCHSSL 587
+CDC + Y G C + +
Sbjct: 980 RGVTCDCAFSAYDGPFCSNEI 1000
Score = 33.5 bits (75), Expect = 1.3
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 212 FKAMQSNGILLHREGQHGNHITLEL-IKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQ 270
FK S+G+ + G + I +EL ++ F + GN T+ T +D
Sbjct: 821 FKTTVSSGVFMENLGIT-DFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTP-----FNDN 874
Query: 271 HWHSVLIELLDTQVNFTVDKHTHHFQ-AKGDSS-NLDLNFEISFGGILSPGRSRAFTRKS 328
WH V E + VD+ Q A D L LN ++ GG A ++
Sbjct: 875 QWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFIGGT-------ATRQRG 927
Query: 329 FHGCLENLYYNGV 341
F GC+ +L NGV
Sbjct: 928 FLGCIRSLQLNGV 940
>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo
sapiens]
Length = 1308
Score = 1378 bits (3567), Expect = 0.0
Identities = 659/919 (71%), Positives = 760/919 (82%), Gaps = 3/919 (0%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR 60
M SV AVLK LLLL TQ W+ V AGN DCD PL SALP++SFSSSSELSSSHGPGF+R
Sbjct: 1 MGSVTGAVLKTLLLLSTQNWNRVEAGNSYDCDDPLVSALPQASFSSSSELSSSHGPGFAR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGW+PLVSNKYQWLQIDLGERMEVTAVATQGGYGSS+WVTSYLLMFSD G NW
Sbjct: 61 LNRRDGAGGWSPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSNWVTSYLLMFSDSGWNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYR+E+SIWGF GN NADSVV+YRLQP +ARFLRF+PL WNP+GRIGMRIEV+GCAY+
Sbjct: 121 KQYRQEDSIWGFSGNANADSVVYYRLQPSIKARFLRFIPLEWNPKGRIGMRIEVFGCAYR 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
SEVV DG+S+LLY D+K L PI+D+ISLKFK MQS+GILLHREG +G+HITL+L + +
Sbjct: 181 SEVVDLDGKSSLLYRFDQKSLSPIKDIISLKFKTMQSDGILLHREGPNGDHITLQLRRAR 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
L +NSG AKLPST V LTLGSLLDDQHWHSVLI+ L QVNFTVD+H HHF A+G+
Sbjct: 241 LFLLINSGEAKLPSTSTLVNLTLGSLLDDQHWHSVLIQRLGKQVNFTVDEHRHHFHARGE 300
Query: 301 SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNV 360
+ ++L++EISFGGI +PG+S +F ++FHGCLENLYYNGVD+ +LAK+ KPQI+ MGNV
Sbjct: 301 FNLMNLDYEISFGGIPAPGKSVSFPHRNFHGCLENLYYNGVDIIDLAKQQKPQIIAMGNV 360
Query: 361 SFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFV 420
SFSC QPQ++PVTFLSSRSYLALP SGE++VS TFQFRTWN+AG LLF ELQ SG +
Sbjct: 361 SFSCSQPQSMPVTFLSSRSYLALPDFSGEEEVSATFQFRTWNKAGLLLFSELQLISGGIL 420
Query: 421 LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTA-VQPLV 479
LFL DGKLK +L+Q G+ P ++TAG LNDGQWHSVS SAK +H++V VD A PL+
Sbjct: 421 LFLSDGKLKSNLYQPGKLPSDITAGVELNDGQWHSVSLSAKKNHLSVAVDGQMASAAPLL 480
Query: 480 A-VLIDSGDTYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFR 538
I SG TYYFGGC S GS CKSPLGGFQGC+RLI+I K VD I VQQG+LG+F
Sbjct: 481 GPEQIYSGGTYYFGGCPDKSFGSKCKSPLGGFQGCMRLISISGKVVDLISVQQGSLGNFS 540
Query: 539 DLQIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHR 598
DLQIDSCGI+DRCLP+YCEHGGECSQSW TF C+C TGY G TCH+S+YEQSCEA+KHR
Sbjct: 541 DLQIDSCGISDRCLPNYCEHGGECSQSWSTFHCNCTNTGYRGATCHNSIYEQSCEAYKHR 600
Query: 599 GNPSGLYYIDADGSGPLGPFLVYCNMTDSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAY 658
GN SG YYID+DGSGPL PFL+YCNMT++AWT+++H G D +R +P + F Y
Sbjct: 601 GNTSGFYYIDSDGSGPLEPFLLYCNMTETAWTIIQHNGSDLTRVRNTNPENPYAGF-FEY 659
Query: 659 AAGAGQLRAAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDA 718
A QL+A +N AE CEQ C +R + +DGTPLSWWVGRTNET T WGGS PD
Sbjct: 660 VASMEQLQATINRAEHCEQEFTYYCKKSRLVNKQDGTPLSWWVGRTNETQTYWGGSSPDL 719
Query: 719 QKCTCGLEGNCIDSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYT 778
QKCTCGLEGNCIDSQYYCNCDA +NEWT+DT +L+ KEHLPVT+IV+TDTG+ HSEA Y
Sbjct: 720 QKCTCGLEGNCIDSQYYCNCDADRNEWTNDTGLLAYKEHLPVTKIVITDTGRLHSEAAYK 779
Query: 779 LGPLLCRGDKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDF 838
LGPLLC+GD+SFWNSASF+TE SYLHFP FHGEL+ADV FFFKTT SSGVF+ENLGI DF
Sbjct: 780 LGPLLCQGDRSFWNSASFDTEASYLHFPTFHGELSADVSFFFKTTASSGVFLENLGIADF 839
Query: 839 IRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKM 898
IRIELR+PT VTFSFDVGNGP E++VQSPT FNDNQWHHVR ERN+K ASLQVDQL K
Sbjct: 840 IRIELRSPTVVTFSFDVGNGPFEISVQSPTHFNDNQWHHVRVERNMKEASLQVDQLTPKT 899
Query: 899 QPAPADGHVRLQLNSQLFI 917
QPAPADGHV LQLNSQLF+
Sbjct: 900 QPAPADGHVLLQLNSQLFV 918
Score = 336 bits (861), Expect = 9e-92
Identities = 175/286 (61%), Positives = 219/286 (76%), Gaps = 4/286 (1%)
Query: 918 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYV 977
EISAYF +GSS+ Y+FQE+Y LS+NSSS +S + D+ L+REMI SFRTTR+PSLLL+V
Sbjct: 999 EISAYFGSGSSVIYNFQENYLLSKNSSSHAASFHGDMKLSREMIKFSFRTTRTPSLLLFV 1058
Query: 978 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1037
SSFY+EYLSVI+A NGSLQIRYKL+++Q PD FDFKNMADGQLH + INREE VV +E
Sbjct: 1059 SSFYKEYLSVIIAKNGSLQIRYKLNKYQEPDVVNFDFKNMADGQLHHIMINREEGVVFIE 1118
Query: 1038 VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1097
++ + ++QV LSSGTEF+AVKSL+LG++LE + D DT A GFTGCLSAV+ AP
Sbjct: 1119 IDDNRRRQVHLSSGTEFSAVKSLVLGRILEHSDVDQDTALAGAQGFTGCLSAVQLSHVAP 1178
Query: 1098 LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 1157
LKAAL PS P VTV GHV + C A + + +RE R A SG +D+ EPL N
Sbjct: 1179 LKAALHPSHPDPVTVTGHVTE-SSCMAQPGTDATSRE---RTHSFADHSGTIDDREPLAN 1234
Query: 1158 ADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSK 1203
A + DSAV+GG+IAVVIFILLCITAIA+RIYQQ++L K +E+K S+
Sbjct: 1235 AIKSDSAVIGGLIAVVIFILLCITAIAVRIYQQKRLYKRSEAKRSE 1280
Score = 58.2 bits (139), Expect = 5e-08
Identities = 64/268 (23%), Positives = 98/268 (36%), Gaps = 38/268 (14%)
Query: 334 ENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVS 393
E+L + +T+ + H +G + + +F + SYL P GE
Sbjct: 757 EHLPVTKIVITDTGRLHSEAAYKLGPLLCQGDRSFWNSASFDTEASYLHFPTFHGELSAD 816
Query: 394 VTFQFRTWNRAGHLLFGELQRGSGSFV-LFLKDGKLKLSLFQAGQSPRNVTAGAG--LND 450
V+F F+T +G L G F+ + L+ + F G P ++ + ND
Sbjct: 817 VSFFFKTTASSGVFLEN---LGIADFIRIELRSPTVVTFSFDVGNGPFEISVQSPTHFND 873
Query: 451 GQWHSVSFSAKWSHMNVVVDDDTA-VQPLVA---VLIDSGDTYYFGGCLGNSSGSGCKSP 506
QWH V ++ VD T QP A VL+ + GG G
Sbjct: 874 NQWHHVRVERNMKEASLQVDQLTPKTQPAPADGHVLLQLNSQLFVGGTATRQRG------ 927
Query: 507 LGGFQGCLRLITIGDKAVD-------PILVQQGALGSFRDLQIDSCGITDRCLPSYCEHG 559
F GC+R + + +D VQ G G S G C +G
Sbjct: 928 ---FLGCIRSLQLNGMTLDLEERAQVTPEVQPGCRG-----HCSSYG-------KLCRNG 972
Query: 560 GECSQSWDTFSCDCLGTGYTGETCHSSL 587
G+C + F CDC + YTG C + +
Sbjct: 973 GKCRERPIGFFCDCTFSAYTGPFCSNEI 1000
>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo
sapiens]
Length = 1235
Score = 1256 bits (3249), Expect = 0.0
Identities = 609/890 (68%), Positives = 700/890 (78%), Gaps = 51/890 (5%)
Query: 30 DCDSPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERM 89
DCD PL SALP++SFSSSSELSSSHGPGF+RLNRRDGAGGW+PLVSNKYQWLQIDLGERM
Sbjct: 5 DCDDPLVSALPQASFSSSSELSSSHGPGFARLNRRDGAGGWSPLVSNKYQWLQIDLGERM 64
Query: 90 EVTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPP 149
EVTAVATQGGYGSS+WVTSYLLMFSD G NWKQYR+E+SIWGF GN NADSVV+YRLQP
Sbjct: 65 EVTAVATQGGYGSSNWVTSYLLMFSDSGWNWKQYRQEDSIWGFSGNANADSVVYYRLQPS 124
Query: 150 FEARFLRFLPLAWNPRGRIGMRIEVYGCAYKSEVVYFDGQSALLYTLDKKPLKPIRDVIS 209
+ARFLRF+PL WNP+GRIGMRIEV+GCAY+SEVV DG+S+LLY D+K L PI+D+IS
Sbjct: 125 IKARFLRFIPLEWNPKGRIGMRIEVFGCAYRSEVVDLDGKSSLLYRFDQKSLSPIKDIIS 184
Query: 210 LKFKAMQSNGILLHREGQHGNHITLELIKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDD 269
LKFK MQS+GILLHREG +G+HITL+L + +L +NSG AKLPST V LTLGSLLDD
Sbjct: 185 LKFKTMQSDGILLHREGPNGDHITLQLRRARLFLLINSGEAKLPSTSTLVNLTLGSLLDD 244
Query: 270 QHWHSVLIELLDTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGILSPGRSRAFTRKSF 329
QHWHSVLI+ L QVNFTVD+H HHF A+G+ + ++L++E
Sbjct: 245 QHWHSVLIQRLGKQVNFTVDEHRHHFHARGEFNLMNLDYE-------------------- 284
Query: 330 HGCLENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGE 389
GNVSFSC QPQ++PVTFLSSRSYLALP SGE
Sbjct: 285 ----------------------------GNVSFSCSQPQSMPVTFLSSRSYLALPDFSGE 316
Query: 390 DKVSVTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAGLN 449
++VS TFQFRTWN+AG LLF ELQ SG +LFL DGKLK +L+Q G+ P ++TAG LN
Sbjct: 317 EEVSATFQFRTWNKAGLLLFSELQLISGGILLFLSDGKLKSNLYQPGKLPSDITAGVELN 376
Query: 450 DGQWHSVSFSAKWSHMNVVVDDDTA-VQPLVAV-LIDSGDTYYFGGCLGNSSGSGCKSPL 507
DGQWHSVS SAK +H++V VD A PL+ I SG TYYFGGC S GS CKSPL
Sbjct: 377 DGQWHSVSLSAKKNHLSVAVDGQMASAAPLLGPEQIYSGGTYYFGGCPDKSFGSKCKSPL 436
Query: 508 GGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSWD 567
GGFQGC+RLI+I K VD I VQQG+LG+F DLQIDSCGI+DRCLP+YCEHGGECSQSW
Sbjct: 437 GGFQGCMRLISISGKVVDLISVQQGSLGNFSDLQIDSCGISDRCLPNYCEHGGECSQSWS 496
Query: 568 TFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSGPLGPFLVYCNMTDS 627
TF C+C TGY G TCH+S+YEQSCEA+KHRGN SG YYID+DGSGPL PFL+YCNMT++
Sbjct: 497 TFHCNCTNTGYRGATCHNSIYEQSCEAYKHRGNTSGFYYIDSDGSGPLEPFLLYCNMTET 556
Query: 628 AWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAAGAGQLRAAVNLAERCEQRLALRCGTAR 687
AWT+++H G D +R +P + F Y A QL+A +N AE CEQ C +R
Sbjct: 557 AWTIIQHNGSDLTRVRNTNPENPYAGF-FEYVASMEQLQATINRAEHCEQEFTYYCKKSR 615
Query: 688 RPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQKCTCGLEGNCIDSQYYCNCDAGQNEWTS 747
+ +DGTPLSWWVGRTNET T WGGS PD QKCTCGLEGNCIDSQYYCNCDA +NEWT+
Sbjct: 616 LVNKQDGTPLSWWVGRTNETQTYWGGSSPDLQKCTCGLEGNCIDSQYYCNCDADRNEWTN 675
Query: 748 DTIVLSQKEHLPVTQIVMTDTGQPHSEADYTLGPLLCRGDKSFWNSASFNTETSYLHFPA 807
DT +L+ KEHLPVT+IV+TDTG+ HSEA Y LGPLLC+GD+SFWNSASF+TE SYLHFP
Sbjct: 676 DTGLLAYKEHLPVTKIVITDTGRLHSEAAYKLGPLLCQGDRSFWNSASFDTEASYLHFPT 735
Query: 808 FHGELTADVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSP 867
FHGEL+ADV FFFKTT SSGVF+ENLGI DFIRIELR+PT VTFSFDVGNGP E++VQSP
Sbjct: 736 FHGELSADVSFFFKTTASSGVFLENLGIADFIRIELRSPTVVTFSFDVGNGPFEISVQSP 795
Query: 868 TPFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFI 917
T FNDNQWHHVR ERN+K ASLQVDQL K QPAPADGHV LQLNSQLF+
Sbjct: 796 THFNDNQWHHVRVERNMKEASLQVDQLTPKTQPAPADGHVLLQLNSQLFV 845
Score = 336 bits (861), Expect = 9e-92
Identities = 175/286 (61%), Positives = 219/286 (76%), Gaps = 4/286 (1%)
Query: 918 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYV 977
EISAYF +GSS+ Y+FQE+Y LS+NSSS +S + D+ L+REMI SFRTTR+PSLLL+V
Sbjct: 926 EISAYFGSGSSVIYNFQENYLLSKNSSSHAASFHGDMKLSREMIKFSFRTTRTPSLLLFV 985
Query: 978 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1037
SSFY+EYLSVI+A NGSLQIRYKL+++Q PD FDFKNMADGQLH + INREE VV +E
Sbjct: 986 SSFYKEYLSVIIAKNGSLQIRYKLNKYQEPDVVNFDFKNMADGQLHHIMINREEGVVFIE 1045
Query: 1038 VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1097
++ + ++QV LSSGTEF+AVKSL+LG++LE + D DT A GFTGCLSAV+ AP
Sbjct: 1046 IDDNRRRQVHLSSGTEFSAVKSLVLGRILEHSDVDQDTALAGAQGFTGCLSAVQLSHVAP 1105
Query: 1098 LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 1157
LKAAL PS P VTV GHV + C A + + +RE R A SG +D+ EPL N
Sbjct: 1106 LKAALHPSHPDPVTVTGHVTE-SSCMAQPGTDATSRE---RTHSFADHSGTIDDREPLAN 1161
Query: 1158 ADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSK 1203
A + DSAV+GG+IAVVIFILLCITAIA+RIYQQ++L K +E+K S+
Sbjct: 1162 AIKSDSAVIGGLIAVVIFILLCITAIAVRIYQQKRLYKRSEAKRSE 1207
Score = 58.2 bits (139), Expect = 5e-08
Identities = 64/268 (23%), Positives = 98/268 (36%), Gaps = 38/268 (14%)
Query: 334 ENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVS 393
E+L + +T+ + H +G + + +F + SYL P GE
Sbjct: 684 EHLPVTKIVITDTGRLHSEAAYKLGPLLCQGDRSFWNSASFDTEASYLHFPTFHGELSAD 743
Query: 394 VTFQFRTWNRAGHLLFGELQRGSGSFV-LFLKDGKLKLSLFQAGQSPRNVTAGAG--LND 450
V+F F+T +G L G F+ + L+ + F G P ++ + ND
Sbjct: 744 VSFFFKTTASSGVFLEN---LGIADFIRIELRSPTVVTFSFDVGNGPFEISVQSPTHFND 800
Query: 451 GQWHSVSFSAKWSHMNVVVDDDTA-VQPLVA---VLIDSGDTYYFGGCLGNSSGSGCKSP 506
QWH V ++ VD T QP A VL+ + GG G
Sbjct: 801 NQWHHVRVERNMKEASLQVDQLTPKTQPAPADGHVLLQLNSQLFVGGTATRQRG------ 854
Query: 507 LGGFQGCLRLITIGDKAVD-------PILVQQGALGSFRDLQIDSCGITDRCLPSYCEHG 559
F GC+R + + +D VQ G G S G C +G
Sbjct: 855 ---FLGCIRSLQLNGMTLDLEERAQVTPEVQPGCRG-----HCSSYG-------KLCRNG 899
Query: 560 GECSQSWDTFSCDCLGTGYTGETCHSSL 587
G+C + F CDC + YTG C + +
Sbjct: 900 GKCRERPIGFFCDCTFSAYTGPFCSNEI 927
Score = 38.1 bits (87), Expect = 0.051
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIKGKLVFF-LNSGNAKLPSTIAPVTLTLGSL 266
+S FK S+G+ L G + I +EL +V F + GN ++ T
Sbjct: 744 VSFFFKTTASSGVFLENLGI-ADFIRIELRSPTVVTFSFDVGNGPFEISVQSPTH----- 797
Query: 267 LDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGDSSN--LDLNFEISFGGILSPGRSRAF 324
+D WH V +E + + VD+ T Q + L LN ++ GG A
Sbjct: 798 FNDNQWHHVRVERNMKEASLQVDQLTPKTQPAPADGHVLLQLNSQLFVGG-------TAT 850
Query: 325 TRKSFHGCLENLYYNG--VDVTELAK 348
++ F GC+ +L NG +D+ E A+
Sbjct: 851 RQRGFLGCIRSLQLNGMTLDLEERAQ 876
>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
Length = 1306
Score = 1074 bits (2778), Expect = 0.0
Identities = 516/911 (56%), Positives = 665/911 (72%), Gaps = 8/911 (0%)
Query: 11 VLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGW 70
VL LL + W +CD PLAS L +FSSSS+L+ +H P ++LN R G GGW
Sbjct: 10 VLTLLFSGLWHLGLTATNYNCDDPLASLLSPMAFSSSSDLTGTHSP--AQLNWRVGTGGW 67
Query: 71 TPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIW 130
+P SN QWLQ+DLG R+E+TAVATQG YGSSDWVTSY LMFSD GRNWKQY++E+SIW
Sbjct: 68 SPADSNAQQWLQMDLGNRVEITAVATQGRYGSSDWVTSYSLMFSDTGRNWKQYKQEDSIW 127
Query: 131 GFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYKSEVVYFDGQS 190
F GN NADSVVH++L ARF+RF+PL WNP G+IGMR+EVYGC+YKS+V FDG+S
Sbjct: 128 TFAGNMNADSVVHHKLLHSVRARFVRFVPLEWNPSGKIGMRVEVYGCSYKSDVADFDGRS 187
Query: 191 ALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGKLVFFLNSGNA 250
+LLY ++K + ++DVISLKFK+MQ +G+L H EGQ G+HITLEL KG+L LN G++
Sbjct: 188 SLLYRFNQKLMSTLKDVISLKFKSMQGDGVLFHGEGQRGDHITLELQKGRLALHLNLGDS 247
Query: 251 KLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGDSSNLDLNFEI 310
K + + + TLGSLLDDQHWHSVLIE + QVNFTVDKHT HF+ KG++ LD+++E+
Sbjct: 248 KARLSSSLPSATLGSLLDDQHWHSVLIERVGKQVNFTVDKHTQHFRTKGETDALDIDYEL 307
Query: 311 SFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTV 370
SFGGI PG+ F +K+FHGC+ENLYYNGV++ +LAK+ K QI GNV+FSC +PQ V
Sbjct: 308 SFGGIPVPGKPGTFLKKNFHGCIENLYYNGVNIIDLAKRRKHQI-YTGNVTFSCSEPQIV 366
Query: 371 PVTFL-SSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLK 429
P+TF+ SS SYL LPG D +SV+FQFRTWN+ G LL EL GSG+ +L L+ G L+
Sbjct: 367 PITFVNSSGSYLLLPGTPQIDGLSVSFQFRTWNKDGLLLSTELSEGSGTLLLSLEGGILR 426
Query: 430 LSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTA--VQPLVAVLIDSGD 487
L + + + + G+ LNDG WHSVS +A+ + + + +DD+ A V I SG+
Sbjct: 427 LVIQKMTERVAEILTGSNLNDGLWHSVSINARRNRITLTLDDEAAPPAPDSTWVQIYSGN 486
Query: 488 TYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGI 547
+YYFGGC N + S C +P+ FQGC+RLI I ++ D I VQQG+LG+F DL ID C I
Sbjct: 487 SYYFGGCPDNLTDSQCLNPIKAFQGCMRLIFIDNQPKDLISVQQGSLGNFSDLHIDLCSI 546
Query: 548 TDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYI 607
DRCLP+YCEHGG CSQSW TF C+C T YTG TCH+S+YEQSCE ++H+GN +G +YI
Sbjct: 547 KDRCLPNYCEHGGSCSQSWTTFYCNCSDTSYTGATCHNSIYEQSCEVYRHQGNTAGFFYI 606
Query: 608 DADGSGPLGPFLVYCNMT-DSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAAGAGQLR 666
D+DGSGPLGP VYCN+T D WT V+H + +RGA P A++ Y QL
Sbjct: 607 DSDGSGPLGPLQVYCNITEDKIWTSVQHNNTELTRVRGANPEKPY-AMALDYGGSMEQLE 665
Query: 667 AAVNLAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQKCTCGLE 726
A ++ +E CEQ +A C +R ++ DGTP +WW+GR+NE H WGGS P Q+C CGL+
Sbjct: 666 AVIDGSEHCEQEVAYHCRRSRLLNTPDGTPFTWWIGRSNERHPYWGGSPPGVQQCECGLD 725
Query: 727 GNCIDSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTLGPLLCRG 786
+C+D Q++CNCDA ++EWT+DT LS K+HLPVTQIV+TDT + +SEA + +GPL C G
Sbjct: 726 ESCLDIQHFCNCDADKDEWTNDTGFLSFKDHLPVTQIVITDTDRSNSEAAWRIGPLRCYG 785
Query: 787 DKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFIRIELRAP 846
D+ FWN+ SF TE SYLHFP FH E +AD+ FFFKTT SGVF+ENLGI DFIR+E+ +P
Sbjct: 786 DRRFWNAVSFYTEASYLHFPTFHAEFSADISFFFKTTALSGVFLENLGIKDFIRLEISSP 845
Query: 847 TEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGH 906
+E+TF+ DVGNGP E+ VQSP+ NDNQWH+VRAERN+K SLQVD LP+ + +GH
Sbjct: 846 SEITFAIDVGNGPVELVVQSPSLLNDNQWHYVRAERNLKETSLQVDNLPRSTRETSEEGH 905
Query: 907 VRLQLNSQLFI 917
RLQLNSQLF+
Sbjct: 906 FRLQLNSQLFV 916
Score = 204 bits (518), Expect = 5e-52
Identities = 117/288 (40%), Positives = 172/288 (59%), Gaps = 6/288 (2%)
Query: 918 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYV 977
E+SA F G+S+TY FQE Y +++N S S++Y D ++E I LSF TT++PSLLL++
Sbjct: 997 EVSAVFEAGTSVTYMFQEPYPVTKNISLSSSAIYTDSAPSKENIALSFVTTQAPSLLLFI 1056
Query: 978 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1037
+S ++++ V+L NGSLQ+RY L++ + FT D N A+ ++H +KINRE + ++
Sbjct: 1057 NSSSQDFVVVLLCKNGSLQVRYHLNKEET-HVFTIDADNFANRRMHHLKINREGRELTIQ 1115
Query: 1038 VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1097
++Q + S EF ++SL LGKV E G D + +A GF GC+S+V++ AP
Sbjct: 1116 MDQQLRLSYNFSPEVEFRVIRSLTLGKVTENLGLDSEVAKANAMGFAGCMSSVQYNHIAP 1175
Query: 1098 LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 1157
LKAALR + + VTV G + + G S + + + G DE EPL N
Sbjct: 1176 LKAALRHATVAPVTVHG---TLTESSCGFMVDSDVNAVT-TVHSSSDPFGKTDEREPLTN 1231
Query: 1158 ADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKE 1205
A R DSAV+GGVIAVVIFI+ CI I R Q K + S++ +KE
Sbjct: 1232 AVRSDSAVIGGVIAVVIFIIFCIIGIMTRFLYQHK-QSHRTSQMKEKE 1278
Score = 50.4 bits (119), Expect = 1e-05
Identities = 58/229 (25%), Positives = 93/229 (40%), Gaps = 44/229 (19%)
Query: 372 VTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLL-------FGELQRGSGSFVLFLK 424
V+F + SYL P E ++F F+T +G L F L+ S S + F
Sbjct: 793 VSFYTEASYLHFPTFHAEFSADISFFFKTTALSGVFLENLGIKDFIRLEISSPSEITFAI 852
Query: 425 D---GKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVAV 481
D G ++L + QSP + LND QWH V ++ VD+ L
Sbjct: 853 DVGNGPVELVV----QSP------SLLNDNQWHYVRAERNLKETSLQVDN------LPRS 896
Query: 482 LIDSGDTYYFGGCLGNSSG-SGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDL 540
++ + +F L + G S GF GC+R + + + +D L ++ + S
Sbjct: 897 TRETSEEGHFRLQLNSQLFVGGTSSRQKGFLGCIRSLHLNGQKMD--LEERAKVTS---- 950
Query: 541 QIDSCGITDRC------LPSYCEHGGECSQSWDTFSCDCLGTGYTGETC 583
G+ C S C +GG+C + + + CDC + Y G C
Sbjct: 951 -----GVRPGCPGHCSSYGSICHNGGKCVEKHNGYLCDCTNSPYEGPFC 994
Score = 42.4 bits (98), Expect = 0.003
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIK-GKLVFFLNSGNAKLPSTIAPVTLTLGS- 265
IS FK +G+ L G + I LE+ ++ F ++ GN PV L + S
Sbjct: 815 ISFFFKTTALSGVFLENLGIK-DFIRLEISSPSEITFAIDVGNG-------PVELVVQSP 866
Query: 266 -LLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGDSSN--LDLNFEISFGGILSPGRSR 322
LL+D WH V E + + VD + + + L LN ++ GG S
Sbjct: 867 SLLNDNQWHYVRAERNLKETSLQVDNLPRSTRETSEEGHFRLQLNSQLFVGGTSS----- 921
Query: 323 AFTRKSFHGCLENLYYNG--VDVTELAK 348
+K F GC+ +L+ NG +D+ E AK
Sbjct: 922 --RQKGFLGCIRSLHLNGQKMDLEERAK 947
>gi|7662350 cell recognition molecule Caspr2 precursor [Homo
sapiens]
Length = 1331
Score = 936 bits (2420), Expect = 0.0
Identities = 443/892 (49%), Positives = 609/892 (68%), Gaps = 7/892 (0%)
Query: 31 CDSPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERME 90
CD PL S LP +FSSSS +S S+ PG++++N+R GAGGW+P S+ YQWLQ+D G R +
Sbjct: 35 CDEPLVSGLPHVAFSSSSSISGSYSPGYAKINKRGGAGGWSPSDSDHYQWLQVDFGNRKQ 94
Query: 91 VTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPF 150
++A+ATQG Y SSDWVT Y +++SD GRNWK Y ++ +IW FPGN N+D VV + LQ P
Sbjct: 95 ISAIATQGRYSSSDWVTQYRMLYSDTGRNWKPYHQDGNIWAFPGNINSDGVVRHELQHPI 154
Query: 151 EARFLRFLPLAWNPRGRIGMRIEVYGCAYKSEVVYFDGQSALLYTLDKKPLKPIRDVISL 210
AR++R +PL WN GRIG+RIEVYGC+Y ++V+ FDG L Y K +K ++DVI+L
Sbjct: 155 IARYVRIVPLDWNGEGRIGLRIEVYGCSYWADVINFDGHVVLPYRFRNKKMKTLKDVIAL 214
Query: 211 KFKAMQSNGILLHREGQHGNHITLELIKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQ 270
FK +S G++LH EGQ G++ITLEL K KLV LN G+ +L ++ GSLLDD
Sbjct: 215 NFKTSESEGVILHGEGQQGDYITLELKKAKLVLSLNLGSNQLGPIYGHTSVMTGSLLDDH 274
Query: 271 HWHSVLIELLDTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGILSPGRSRAFTRKSFH 330
HWHSV+IE +N T+D+ HF+ G+ LDL++EI+FGGI G+ + +RK+F
Sbjct: 275 HWHSVVIERQGRSINLTLDRSMQHFRTNGEFDYLDLDYEITFGGIPFSGKPSSSSRKNFK 334
Query: 331 GCLENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGED 390
GC+E++ YNGV++T+LA++ K + +GN+SFSC +P TVPV F ++ SYL +PG +D
Sbjct: 335 GCMESINYNGVNITDLARRKKLEPSNVGNLSFSCVEPYTVPV-FFNATSYLEVPGRLNQD 393
Query: 391 KVSVTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGK--LKLSLFQAGQSPRNVTAGAGL 448
SV+FQFRTWN G L+F G+ + L + K + +++ Q S ++++G+GL
Sbjct: 394 LFSVSFQFRTWNPNGLLVFSHFADNLGNVEIDLTESKVGVHINITQTKMSQIDISSGSGL 453
Query: 449 NDGQWHSVSFSAKWSHMNVVVDDD--TAVQPLVAVLIDSGDTYYFGGCLGNSSGSGCKSP 506
NDGQWH V F AK + + +D D +AV+ + + +G+ Y+FGG L + S
Sbjct: 454 NDGQWHEVRFLAKENFAILTIDGDEASAVRTNSPLQVKTGEKYFFGGFLNQMNNSSHSVL 513
Query: 507 LGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSW 566
FQGC++LI + D+ V+ V Q GSF ++ ID C I DRC+P++CEHGG+CSQ+W
Sbjct: 514 QPSFQGCMQLIQVDDQLVNLYEVAQRKPGSFANVSIDMCAIIDRCVPNHCEHGGKCSQTW 573
Query: 567 DTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSGPLGPFLVYCNMT- 625
D+F C C TGY+G TCH+S+YE SCEA+KH G S Y+ID DGSGPLGP VYCNMT
Sbjct: 574 DSFKCTCDETGYSGATCHNSIYEPSCEAYKHLGQTSNYYWIDPDGSGPLGPLKVYCNMTE 633
Query: 626 DSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAAGAGQLRAAVNLAERCEQRLALRCGT 685
D WT+V H + G + S Y+A Q+ A + AE CEQ ++ C
Sbjct: 634 DKVWTIVSHDLQMQTPVVGY-NPEKYSVTQLVYSASMDQISAITDSAEYCEQYVSYFCKM 692
Query: 686 ARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQKCTCGLEGNCIDSQYYCNCDAGQNEW 745
+R ++ DG+P +WWVG+ NE H WGGS P QKC CG+E NC D +YYCNCDA +W
Sbjct: 693 SRLLNTPDGSPYTWWVGKANEKHYYWGGSGPGIQKCACGIERNCTDPKYYCNCDADYKQW 752
Query: 746 TSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTLGPLLCRGDKSFWNSASFNTETSYLHF 805
D LS K+HLPV+Q+V+ DT + SEA ++GPL C+GD+++WN+ASF +SYLHF
Sbjct: 753 RKDAGFLSYKDHLPVSQVVVGDTDRQGSEAKLSVGPLRCQGDRNYWNAASFPNPSSYLHF 812
Query: 806 PAFHGELTADVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQ 865
F GE +AD+ F+FKT GVF+EN+G DFI++EL++ TEV+FSFDVGNGP E+ V+
Sbjct: 813 STFQGETSADISFYFKTLTPWGVFLENMGKEDFIKLELKSATEVSFSFDVGNGPVEIVVR 872
Query: 866 SPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFI 917
SPTP ND+QWH V AERNVK ASLQVD+LPQ+++ AP +GH RL+L SQLF+
Sbjct: 873 SPTPLNDDQWHRVTAERNVKQASLQVDRLPQQIRKAPTEGHTRLELYSQLFV 924
Score = 168 bits (426), Expect = 2e-41
Identities = 111/303 (36%), Positives = 164/303 (54%), Gaps = 15/303 (4%)
Query: 918 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVT----LTREMITLSFRTTRSPSL 973
++ A+F G + Y+FQ T + +SSS V + L +E I SF TT++P +
Sbjct: 1004 DVGAFFEEGMWLRYNFQAPATNARDSSSRVDNAPDQQNSHPDLAQEEIRFSFSTTKAPCI 1063
Query: 974 LLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAV 1033
LLY+SSF ++L+V++ GSLQIRY L + P D +NMA+GQ H V I R E
Sbjct: 1064 LLYISSFTTDFLAVLVKPTGSLQIRYNLGGTREPYNIDVDHRNMANGQPHSVNITRHEKT 1123
Query: 1034 VMVEVNQ--SAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVR 1091
+ ++++ S + SS T FN+ KSL LGKV+E D + + T GFTGCLS V+
Sbjct: 1124 IFLKLDHYPSVSYHLPSSSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQ 1183
Query: 1092 FGRAAPLKAALRPSGPS-RVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVD 1150
F + APLKAALR + S V ++G + + C A + SP S D
Sbjct: 1184 FNQIAPLKAALRQTNASAHVHIQGELVE-SNCGASPLTLSPMSSATDPWHLDHLDSASAD 1242
Query: 1151 ------EGEPLVNADRRDSAVMGGVIAVVIFILLCITAIAIR-IYQQRKLRKENESKVSK 1203
+G+ + N R+SA++GGVIAVVIF +LC IR +++ + NE+K ++
Sbjct: 1243 FPYNPGQGQAIRNGVNRNSAIIGGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAKGAE 1302
Query: 1204 KEE 1206
E
Sbjct: 1303 SAE 1305
Score = 55.8 bits (133), Expect = 2e-07
Identities = 56/221 (25%), Positives = 86/221 (38%), Gaps = 23/221 (10%)
Query: 373 TFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFV-LFLKDGKLKLS 431
+F + SYL GE ++F F+T G L G F+ L LK
Sbjct: 802 SFPNPSSYLHFSTFQGETSADISFYFKTLTPWGVFLEN---MGKEDFIKLELKSATEVSF 858
Query: 432 LFQAGQSPRNVTAGAG--LNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVAVLIDSGDT- 488
F G P + + LND QWH V+ ++ VD + + G T
Sbjct: 859 SFDVGNGPVEIVVRSPTPLNDDQWHRVTAERNVKQASLQVD---RLPQQIRKAPTEGHTR 915
Query: 489 --YYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCG 546
Y +G + G GF GC+R + + +D L ++ + S I C
Sbjct: 916 LELYSQLFVGGAGGQQ------GFLGCIRSLRMNGVTLD--LEERAKVTSGF---ISGCS 964
Query: 547 ITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSL 587
+ CE+GG+C + + +SCDC T Y G C+ +
Sbjct: 965 GHCTSYGTNCENGGKCLERYHGYSCDCSNTAYDGTFCNKDV 1005
>gi|239743797 PREDICTED: similar to cell recognition molecule CASPR3
[Homo sapiens]
Length = 944
Score = 746 bits (1926), Expect = 0.0
Identities = 374/465 (80%), Positives = 383/465 (82%), Gaps = 41/465 (8%)
Query: 494 CLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLP 553
CLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLP
Sbjct: 187 CLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLP 246
Query: 554 SYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSG 613
SYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSG
Sbjct: 247 SYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSG 306
Query: 614 PLGPFLVYCNMTDSAWTVVR---------------------HGGPDAVTLRGAPSGHPLS 652
PLGPFLVYCNMTD + + GG RG P P
Sbjct: 307 PLGPFLVYCNMTDRSALPLAAGLCRPVMPLLCPFLLSRLRVDGGAARWPRRGDPPRCPQW 366
Query: 653 AVSFAY----------AAGAGQ----LRAAVNLAERCEQR-----LALRCGTARRPDSRD 693
A + AAG G+ LRAA A R L ++ T + +
Sbjct: 367 APALGCVLRVRSGRGAAAGRGEPGGALRAAAGSALRDSAAPGLTSLMVKSVTFKVAFREE 426
Query: 694 -GTPLSWWVGRTNETHTSWGGSLPDAQKCTCGLEGNCIDSQYYCNCDAGQNEWTSDTIVL 752
GTPLSWWVGRTNETHTSWGGSLPDAQKCTCGLEGNCIDSQYYCNCDAG+NEWTSDTIVL
Sbjct: 427 YGTPLSWWVGRTNETHTSWGGSLPDAQKCTCGLEGNCIDSQYYCNCDAGRNEWTSDTIVL 486
Query: 753 SQKEHLPVTQIVMTDTGQPHSEADYTLGPLLCRGDKSFWNSASFNTETSYLHFPAFHGEL 812
SQKEHLPVTQIVMTD GQPHSEADYTLGPLLCRGDKSFWNSASFNTETSYLHFPAFHGEL
Sbjct: 487 SQKEHLPVTQIVMTDAGQPHSEADYTLGPLLCRGDKSFWNSASFNTETSYLHFPAFHGEL 546
Query: 813 TADVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFND 872
TADVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFND
Sbjct: 547 TADVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFND 606
Query: 873 NQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFI 917
NQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFI
Sbjct: 607 NQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFI 651
Score = 287 bits (735), Expect = 4e-77
Identities = 148/153 (96%), Positives = 151/153 (98%)
Query: 918 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYV 977
EISAYFATGSSMTYHFQEHYTLSENSSSLVSSL+RDVTLTREMITLSFRTTR+PSLLLYV
Sbjct: 732 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 791
Query: 978 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1037
SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE
Sbjct: 792 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 851
Query: 1038 VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAG 1070
VNQSAKKQVILSSGTEFNAVKSLILGKVL +G
Sbjct: 852 VNQSAKKQVILSSGTEFNAVKSLILGKVLGRSG 884
Score = 123 bits (308), Expect = 1e-27
Identities = 62/64 (96%), Positives = 63/64 (98%)
Query: 1144 GRSGPVDEGEPLVNADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSK 1203
GRSGPVDEGEPLVNADRRDSAV+GGVIAV IFILLCITAIAIRIYQQRKLRKENESKVSK
Sbjct: 881 GRSGPVDEGEPLVNADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSK 940
Query: 1204 KEEC 1207
KEEC
Sbjct: 941 KEEC 944
Score = 48.1 bits (113), Expect = 5e-05
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 24/261 (9%)
Query: 334 ENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVS 393
E+L + +T+ + H +G + + +F + SYL P GE
Sbjct: 490 EHLPVTQIVMTDAGQPHSEADYTLGPLLCRGDKSFWNSASFNTETSYLHFPAFHGELTAD 549
Query: 394 VTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSL-FQAGQSPRNVT--AGAGLND 450
V F F+T +G +F E G F+ +++ F G P VT + ND
Sbjct: 550 VCFFFKTTVSSG--VFME-NLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFND 606
Query: 451 GQWHSVSFSAKWSHMNVVVDD-DTAVQPLVA---VLIDSGDTYYFGGCLGNSSGSGCKSP 506
QWH V ++ VD +QP A V + + GG
Sbjct: 607 NQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFIGGTATRQR------- 659
Query: 507 LGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSW 566
GF GC+R + + A+D L ++ + + C C +GG C +
Sbjct: 660 --GFLGCIRSLQLNGVALD--LEERATVMPGVE---PGCAGHCSTYGHLCRNGGRCREKR 712
Query: 567 DTFSCDCLGTGYTGETCHSSL 587
+CDC + Y G C + +
Sbjct: 713 RGVTCDCAFSAYDGPFCSNEI 733
Score = 33.5 bits (75), Expect = 1.3
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 212 FKAMQSNGILLHREGQHGNHITLEL-IKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQ 270
FK S+G+ + G + I +EL ++ F + GN T+ T +D
Sbjct: 554 FKTTVSSGVFMENLGIT-DFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTP-----FNDN 607
Query: 271 HWHSVLIELLDTQVNFTVDKHTHHFQ-AKGDSS-NLDLNFEISFGGILSPGRSRAFTRKS 328
WH V E + VD+ Q A D L LN ++ GG A ++
Sbjct: 608 QWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFIGGT-------ATRQRG 660
Query: 329 FHGCLENLYYNGV 341
F GC+ +L NGV
Sbjct: 661 FLGCIRSLQLNGV 673
>gi|239743729 PREDICTED: similar to contactin associated
protein-like 3B [Homo sapiens]
Length = 380
Score = 723 bits (1866), Expect = 0.0
Identities = 352/357 (98%), Positives = 354/357 (99%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHGPGFSR 60
MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCD+PLASALPRSSFSSSSELSSSHGPGFSR
Sbjct: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSFSSSSELSSSHGPGFSR 60
Query: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW
Sbjct: 61 LNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNW 120
Query: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK
Sbjct: 121 KQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYK 180
Query: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGK 240
SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIK K
Sbjct: 181 SEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKRK 240
Query: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGD 300
LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELL TQVNFTVDKHTHHFQAKGD
Sbjct: 241 LVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLHTQVNFTVDKHTHHFQAKGD 300
Query: 301 SSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM 357
SSNLDLNFEISFGGI +PGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM
Sbjct: 301 SSNLDLNFEISFGGIPTPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQILMM 357
Score = 35.4 bits (80), Expect = 0.33
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 394 VTFQFRTWNRAGHLLFGELQRGSG--------SFVLFLKDGKLKLSLFQAGQSPRNVTAG 445
++ +F+ G LL E Q G+ V FL G KL A P +T G
Sbjct: 208 ISLKFKAMQSNGILLHREGQHGNHITLELIKRKLVFFLNSGNAKLPSTIA---PVTLTLG 264
Query: 446 AGLNDGQWHSVSFSAKWSHMNVVVDDDT 473
+ L+D WHSV + +N VD T
Sbjct: 265 SLLDDQHWHSVLIELLHTQVNFTVDKHT 292
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 708 bits (1827), Expect = 0.0
Identities = 354/897 (39%), Positives = 530/897 (59%), Gaps = 14/897 (1%)
Query: 31 CDSPLASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERME 90
CD L L S +SS S P F+RL+ G GW+P + + WLQIDL ++
Sbjct: 25 CDEELVGPLYARSLGASSYYSLLTAPRFARLH---GISGWSPRIGDPNPWLQIDLMKKHR 81
Query: 91 VTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPF 150
+ AVATQG + S DWVT Y+L++ D +W + + F GN N +VV + L F
Sbjct: 82 IRAVATQGSFNSWDWVTRYMLLYGDRVDSWTPFYQRGHNSTFFGNVNESAVVRHDLHFHF 141
Query: 151 EARFLRFLPLAWNPRGRIGMRIEVYGCAYKSEVVYFDGQSALLYTLDKKPLKPIRDVISL 210
AR++R +PLAWNPRG+IG+R+ +YGC YK++++YFDG A+ Y + + + DV +
Sbjct: 142 TARYIRIVPLAWNPRGKIGLRLGLYGCPYKADILYFDGDDAISYRFPRGVSRSLWDVFAF 201
Query: 211 KFKAMQSNGILLHREGQHGNHITLELIKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQ 270
FK + +G+LLH EG G+++TLEL L+ ++ G++ + T++ G +L+DQ
Sbjct: 202 SFKTEEKDGLLLHAEGAQGDYVTLELEGAHLLLHMSLGSSPIQPRPGHTTVSAGGVLNDQ 261
Query: 271 HWHSVLIELLDTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGILSPGRSRAFTRKSFH 330
HWH V ++ VNFT+D + F GD L+L+ E+ GG++ R R +F
Sbjct: 262 HWHYVRVDRFGRDVNFTLDGYVQRFILNGDFERLNLDTEMFIGGLVGAARKNLAYRHNFR 321
Query: 331 GCLENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGED 390
GC+EN+ +N V++ +LA + +I G V+F C P P+ F +++ +PG
Sbjct: 322 GCIENVIFNRVNIADLAVRRHSRITFEGKVAFRCLDPVPHPINFGGPHNFVQVPGFPRRG 381
Query: 391 KVSVTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAGLND 450
+++V+F+FRTW+ G LLF L G G L L +G++ +S+ Q+G+ AG LND
Sbjct: 382 RLAVSFRFRTWDLTGLLLFSRLGDGLGHVELTLSEGQVNVSIAQSGRKKLQFAAGYRLND 441
Query: 451 GQWHSVSFSAKWSHMNVVVDDDTAVQPLVA--VLIDSGDTYYFGGCLGNSSGSGCKSPLG 508
G WH V+F A+ +H + +DD + V+ +LI +G +Y+FGGC +S C S
Sbjct: 442 GFWHEVNFVAQENHAVISIDDVEGAEVRVSYPLLIRTGTSYFFGGCPKPASRWDCHSNQT 501
Query: 509 GFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSWDT 568
F GC+ L+ + + V+ LV+ LG + ++ D+CGITDRC P+ CEH G C QSWD
Sbjct: 502 AFHGCMELLKVDGQLVNLTLVEGRRLGFYAEVLFDTCGITDRCSPNMCEHDGRCYQSWDD 561
Query: 569 FSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSGPLGPFLVYCNMTDS- 627
F C C TGY GETCH+ LY++SCEA++ G SG + ID DGSGPL PF+VYC++ ++
Sbjct: 562 FICYCELTGYKGETCHTPLYKESCEAYRLSGKTSGNFTIDPDGSGPLKPFVVYCDIRENR 621
Query: 628 AWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAAGAGQLRAAVNLAERCEQRLALRCGTAR 687
AWTVVRH + G+ P + A ++ A N ++ CEQ + C +R
Sbjct: 622 AWTVVRHDRLWTTRVTGSSMERPFLGAIQYWNASWEEVSALANASQHCEQWIEFSCYNSR 681
Query: 688 RPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQKCTCGLEGNCIDSQYYCNCDAGQNEWTS 747
++ G P S+W+GR E H WGGS P Q+C CGL+ +C+D YCNCDA Q +W +
Sbjct: 682 LLNTAGGYPYSFWIGRNEEQHFYWGGSQPGIQRCACGLDRSCVDPALYCNCDADQPQWRT 741
Query: 748 DTIVLSQKEHLPVTQIVMTDTGQPHSEADYTLGPLLCRGDKSFWNSASFNTETSYLHFPA 807
D +L+ +HLPVTQ+V+ DT + SEA + L PL C GD++ WN+ SF+T + L FP
Sbjct: 742 DKGLLTFVDHLPVTQVVIGDTNRSTSEAQFFLRPLRCYGDRNSWNTISFHTGAA-LRFPP 800
Query: 808 FHGELTADVCFFFKTTVSSGVFMENLG------ITDFIRIELRAPTEVTFSFDVGNGPCE 861
+ DV F+F+T+ SGVF+EN+G ++R+EL +V F+FDVGNG
Sbjct: 801 IRANHSLDVSFYFRTSAPSGVFLENMGGPYCQWRRPYVRVELNTSRDVVFAFDVGNGDEN 860
Query: 862 VTVQSPT-PFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQLFI 917
+TV S FND++WH VRAE NVK A L+VD P ++P P ++ ++ + L++
Sbjct: 861 LTVHSDDFEFNDDEWHLVRAEINVKQARLRVDHRPWVLRPMPLQTYIWMEYDQPLYV 917
Score = 105 bits (261), Expect = 3e-22
Identities = 55/154 (35%), Positives = 94/154 (61%), Gaps = 4/154 (2%)
Query: 956 LTREMITLSFRTTRSPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFK 1015
+T E ++ SF T+ +P++LLYVSSF +Y++V++ ++G+LQ+RY+L +P + +
Sbjct: 1079 VTGEEVSFSFSTSSAPAVLLYVSSFVRDYMAVLIKDDGTLQLRYQLGT--SPYVYQLTTR 1136
Query: 1016 NMADGQLHQVKINREEAVVMVEVNQS--AKKQVILSSGTEFNAVKSLILGKVLEAAGADP 1073
+ DGQ H + I R + ++V+ +++ L ++ ++ K+L LG+V+E DP
Sbjct: 1137 PVTDGQPHSINITRVYRNLFIQVDYFPLTEQKFSLLVDSQLDSPKALYLGRVMETGVIDP 1196
Query: 1074 DTRRAATSGFTGCLSAVRFGRAAPLKAALRPSGP 1107
+ +R T GF+GCLS VRF APLK R P
Sbjct: 1197 EIQRYNTPGFSGCLSGVRFNNVAPLKTHFRTPRP 1230
Score = 35.8 bits (81), Expect = 0.25
Identities = 41/165 (24%), Positives = 58/165 (35%), Gaps = 27/165 (16%)
Query: 433 FQAGQSPRNVTAGAG---LNDGQWHSVSFSAKWSHMNVVVDDDTAV---QPLVAVLIDSG 486
F G N+T + ND +WH V + VD V PL +
Sbjct: 852 FDVGNGDENLTVHSDDFEFNDDEWHLVRAEINVKQARLRVDHRPWVLRPMPLQTYIWMEY 911
Query: 487 DTYYFGGCLGNSSGSGCKSPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCG 546
D + G S + P F GCLR + + V G + S
Sbjct: 912 DQPLYVG-----SAELKRRP---FVGCLRAMRLNG-------VTLNLEGRANASEGTSPN 956
Query: 547 ITDRC----LPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSL 587
T C LP C HGG C + + ++CDC T + G C+ +
Sbjct: 957 CTGHCAHPRLP--CFHGGRCVERYSYYTCDCDLTAFDGPYCNHDI 999
Score = 32.0 bits (71), Expect = 3.7
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 394 VTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAG-LNDGQ 452
V+F F T + LL+ VL DG L+L +Q G SP + DGQ
Sbjct: 1084 VSFSFSTSSAPAVLLYVSSFVRDYMAVLIKDDGTLQLR-YQLGTSPYVYQLTTRPVTDGQ 1142
Query: 453 WHSVSFSAKWSHMNVVVDDDTAVQPLVAVLIDSGDTYYFGGCLGNSSGSGCKSP------ 506
HS++ + + ++ + VD + ++L+DS LG +G P
Sbjct: 1143 PHSINITRVYRNLFIQVDYFPLTEQKFSLLVDSQLDSPKALYLGRVMETGVIDPEIQRYN 1202
Query: 507 LGGFQGCL 514
GF GCL
Sbjct: 1203 TPGFSGCL 1210
>gi|169184330 PREDICTED: novel protein similar to contactin associated
protein-like 3 (CNTNAP3) [Homo sapiens]
Length = 291
Score = 550 bits (1417), Expect = e-156
Identities = 284/291 (97%), Positives = 289/291 (99%)
Query: 917 IEISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLY 976
++ISAYFATGSSMTYHFQEHYTLSENSSSLVSSL+RDVTLTREMITLSFRTTR+PSLLLY
Sbjct: 1 MKISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLY 60
Query: 977 VSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMV 1036
VSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMV
Sbjct: 61 VSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMV 120
Query: 1037 EVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAA 1096
EVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFG AA
Sbjct: 121 EVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAA 180
Query: 1097 PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLV 1156
PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLV
Sbjct: 181 PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLV 240
Query: 1157 NADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 1207
NADRRDSAV+GGVIAV IFILLCITAIAIRIYQQRKLRKENESKVSKKEEC
Sbjct: 241 NADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 291
>gi|239758135 PREDICTED: similar to cell recognition molecule CASPR3
[Homo sapiens]
Length = 140
Score = 265 bits (678), Expect = 2e-70
Identities = 136/138 (98%), Positives = 138/138 (100%)
Query: 929 MTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVI 988
MTYHFQEHYTLSENSSSLVSSL+RDVTLTREMITLSFRTTR+PSLLLYVSSFYEEYLSVI
Sbjct: 1 MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60
Query: 989 LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 1048
LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL
Sbjct: 61 LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120
Query: 1049 SSGTEFNAVKSLILGKVL 1066
SSGTEFNAVKSLILGKVL
Sbjct: 121 SSGTEFNAVKSLILGKVL 138
>gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]
Length = 1712
Score = 166 bits (421), Expect = 9e-41
Identities = 196/801 (24%), Positives = 319/801 (39%), Gaps = 114/801 (14%)
Query: 183 VVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGKLV 242
V F G Y L P++ D I+L F+ +Q NG++LH G+ +++ L L G +
Sbjct: 289 VATFKGNEFFCYDLSHNPIQSSTDEITLAFRTLQRNGLMLHT-GKSADYVNLSLKSGAVW 347
Query: 243 FFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSV---------------LIELLDTQVNFT 287
+N G+ + + PV +D WH V ++ L V +
Sbjct: 348 LVINLGSGAFEALVEPVN----GKFNDNAWHDVRVTRNLRQHAGIGHAMVNKLHYLVTIS 403
Query: 288 VDKH-THHFQAKGDSSNLDLNFEISFGGILSPGRSR---AFTRKSFHGCLENLYYNGVD- 342
VD T + D + L + GG SP + + +F GCL+++ Y D
Sbjct: 404 VDGILTTTGYTQEDYTMLGSDDFFYIGG--SPNTADLPGSPVSNNFMGCLKDVVYKNNDF 461
Query: 343 ---VTELAKKHKPQILMMGNVSFSCPQPQTV-PVTFLSSRSYLALPGNSGEDKVSVTFQF 398
++ LAK+ P++ + G++SF C + PVTF S +++ALP S + S++ F
Sbjct: 462 KLELSRLAKEGDPKMKLQGDLSFRCEDVAALDPVTFESPEAFVALPRWSAKRTGSISLDF 521
Query: 399 RTWNRAGHLLFGELQRGSGS------------FVLFLKDGKLKLSLFQAGQSPRNVTAGA 446
RT G LLF + +R G F + L DG L L L + +
Sbjct: 522 RTTEPNGLLLFSQGRRAGGGAGSHSSAQRADYFAMELLDGHLYLLLDMGSGGIKLRASSR 581
Query: 447 GLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVAV----LIDSGDTYYFGGCLGNSSGSG 502
+NDG+W V F ++ V+ + P +A ++D Y GG G
Sbjct: 582 KVNDGEWCHVDFQRDGRKGSISVNSRST--PFLATGDSEILDLESELYLGGL---PEGGR 636
Query: 503 CKSPL----------GGFQGCLRLITIGDKAVD--PILVQQGALGSFRDLQIDSCGITDR 550
PL G+ GC+R + I ++ D + QGA+G S +
Sbjct: 637 VDLPLPPEVWTAALRAGYVGCVRDLFIDGRSRDLRGLAEAQGAVGV---APFCSRETLKQ 693
Query: 551 CLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDAD 610
C + C +GG C + W+ F CDC+GTG+ G C + D
Sbjct: 694 CASAPCRNGGVCREGWNRFICDCIGTGFLGRVCERE-----------------ATVLSYD 736
Query: 611 GSGPLGPFLVYCNMTDSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAAGAGQLRAAVN 670
GS + L T++ +R A L A + SA + GQ++ VN
Sbjct: 737 GSMYMKIMLPNAMHTEAEDVSLRFMSQRAYGLMMATTSRE-SADTLRLELDGGQMKLTVN 795
Query: 671 LAERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHTSWGGSLPDAQKCTCGLEGNCI 730
L LR G A P T + NE HT + + ++ +
Sbjct: 796 LD-------CLRVGCA--PSKGPETLFAGHKLNDNEWHTV--RVVRRGKSLQLSVDNVTV 844
Query: 731 DSQYYCNCDAGQNEWTSDTIVLSQKEHLPVTQ-------IVMTDTGQPH----SEADYTL 779
+ Q +T +++++ + V + GQP+ + D T
Sbjct: 845 EGQ-MAGAHMRLEFHNIETGIMTERRFISVVPSNFIGHLSGLVFNGQPYMDQCKDGDITY 903
Query: 780 GPLLCR-GDKSF-WNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGI-T 836
L R G ++ + +F + +SYL + + F FKTT G+ + N G
Sbjct: 904 CELNARFGLRAIVADPVTFKSRSSYLALATLQAYASMHLFFQFKTTAPDGLLLFNSGNGN 963
Query: 837 DFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQ 896
DFI IEL + + FD+GNGP + S P NDNQWH+V R+ ++ ++
Sbjct: 964 DFIVIEL-VKGYIHYVFDLGNGPSLMKGNSDKPVNDNQWHNVVVSRD--PGNVHTLKIDS 1020
Query: 897 KMQPAPADGHVRLQLNSQLFI 917
+ ++G L L +L+I
Sbjct: 1021 RTVTQHSNGARNLDLKGELYI 1041
Score = 115 bits (289), Expect = 2e-25
Identities = 113/418 (27%), Positives = 176/418 (42%), Gaps = 20/418 (4%)
Query: 177 CAYKSEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHG-NHITLE 235
C ++ V+ +DG + L DV SL+F + ++ G+++ + + + LE
Sbjct: 726 CEREATVLSYDGSMYMKIMLPNAMHTEAEDV-SLRFMSQRAYGLMMATTSRESADTLRLE 784
Query: 236 LIKGKLVFFLNSGNAKL---PSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHT 292
L G++ +N ++ PS P TL G L+D WH+V + + +VD T
Sbjct: 785 LDGGQMKLTVNLDCLRVGCAPSK-GPETLFAGHKLNDNEWHTVRVVRRGKSLQLSVDNVT 843
Query: 293 HHFQAKGDSSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKP 352
Q G +++ L F GI++ R + +F G L L +NG + K
Sbjct: 844 VEGQMAG--AHMRLEFHNIETGIMTERRFISVVPSNFIGHLSGLVFNGQPYMDQCKDGDI 901
Query: 353 QILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGEL 412
+ N F PVTF S SYLAL + + FQF+T G LLF
Sbjct: 902 TYCEL-NARFGLRAIVADPVTFKSRSSYLALATLQAYASMHLFFQFKTTAPDGLLLFNS- 959
Query: 413 QRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAG--LNDGQWHSVSFSAKWSHMNVV-V 469
G+ V+ L G + +F G P + + +ND QWH+V S +++ + +
Sbjct: 960 GNGNDFIVIELVKGYIHY-VFDLGNGPSLMKGNSDKPVNDNQWHNVVVSRDPGNVHTLKI 1018
Query: 470 DDDTAVQPLVAVL-IDSGDTYYFGGCLGNSSGSGCK--SPLGGFQGCLRLITIGDKAVDP 526
D T Q +D Y GG N + K + GFQGCL + + + D
Sbjct: 1019 DSRTVTQHSNGARNLDLKGELYIGGLSKNMFSNLPKLVASRDGFQGCLASVDLNGRLPDL 1078
Query: 527 ILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCH 584
I AL ++ G + C C + G C Q WD F+CDC T Y G C+
Sbjct: 1079 IA---DALHRIGQVERGCDGPSTTCTEESCANQGVCLQQWDGFTCDCTMTSYGGPVCN 1133
Score = 38.9 bits (89), Expect = 0.030
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 961 ITLSFRTTRSPSLLLYVSSFYE-EYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMAD 1019
++ S RT + +LLLY+ + ++L ++L + G L++R+ L + P D +AD
Sbjct: 53 LSFSLRTNATRALLLYLDDGGDCDFLELLLVD-GRLRLRFTLSCAE-PATLQLDTP-VAD 109
Query: 1020 GQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAA 1079
+ H V + R+ + V+ A+ + S E L +G G PD R +A
Sbjct: 110 DRWHMVLLTRDARRTALAVDGEARAAEVRSKRREMQVASDLFVG------GIPPDVRLSA 163
Query: 1080 TS--------GFTGCLSAVRFGRAAPLKAALRPSGPSRVTVRGHVAPMAR-CAAG 1125
+ F G L+ ++ G P A L G T AP CA G
Sbjct: 164 LTLSTVKYEPPFRGLLANLKLGERPP--ALLGSQGLRGATADPLCAPARNPCANG 216
Score = 37.4 bits (85), Expect = 0.087
Identities = 51/237 (21%), Positives = 86/237 (36%), Gaps = 23/237 (9%)
Query: 386 NSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAG 445
+SGE ++F RT LL+ + L L DG+L+L + P +
Sbjct: 49 SSGE----LSFSLRTNATRALLLYLDDGGDCDFLELLLVDGRLRLRFTLSCAEPATLQLD 104
Query: 446 AGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVAVL--IDSGDTYYFGGCLGNSSGSGC 503
+ D +WH V + + VD + + + + + GG + S
Sbjct: 105 TPVADDRWHMVLLTRDARRTALAVDGEARAAEVRSKRREMQVASDLFVGGIPPDVRLSAL 164
Query: 504 KSPL----GGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSY--CE 557
F+G L + +G++ +L QG G+ D C P+ C
Sbjct: 165 TLSTVKYEPPFRGLLANLKLGERP-PALLGSQGLRGATAD---------PLCAPARNPCA 214
Query: 558 HGGECSQ-SWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSG 613
+GG C+ + CDC TG+ G+ C + AH + G G+G
Sbjct: 215 NGGLCTVLAPGEVGCDCSHTGFGGKFCSEEEHPMEGPAHLTLNSEVGSLLFSEGGAG 271
Score = 32.3 bits (72), Expect = 2.8
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 241 LVFFLNSGNAKLPSTIA---PVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQA 297
L L G +L T++ P TL L + + D WH VL+ + VD +
Sbjct: 78 LELLLVDGRLRLRFTLSCAEPATLQLDTPVADDRWHMVLLTRDARRTALAVDGEARAAEV 137
Query: 298 KGDSSNLDLNFEISFGGILSPGRSRAFTRKS------FHGCLENL 336
+ + + ++ GGI R A T + F G L NL
Sbjct: 138 RSKRREMQVASDLFVGGIPPDVRLSALTLSTVKYEPPFRGLLANL 182
Score = 32.0 bits (71), Expect = 3.7
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 834 GITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPF-NDNQWHHVRAERNVKGASLQVD 892
G+ D++++ + T V F+VG ++T+ P +D ++H VR R+ A+LQVD
Sbjct: 1186 GLGDYLQLHIDQGT-VGVIFNVGTD--DITIDEPNAIVSDGKYHVVRFTRSGGNATLQVD 1242
Query: 893 QLP-QKMQPAPADGHVRLQLNSQ 914
P + PA + RL + Q
Sbjct: 1243 SWPVNERYPAGNFDNERLAIARQ 1265
>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
Length = 1477
Score = 164 bits (415), Expect = 5e-40
Identities = 190/805 (23%), Positives = 326/805 (40%), Gaps = 129/805 (16%)
Query: 183 VVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGKLV 242
+ F G Y L + P++ D I+L FK +Q NG++LH G+ +++ L L G +
Sbjct: 283 IATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHT-GKSADYVNLALKNGAVS 341
Query: 243 FFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIEL----------------LD----- 281
+N G+ + + PV +D WH V + +D
Sbjct: 342 LVINLGSGAFEALVEPVN----GKFNDNAWHDVKVTRNLRQHSGIGHAMVTISVDGILTT 397
Query: 282 ---TQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYY 338
TQ ++T+ F G S DL PG +F GCL+ + Y
Sbjct: 398 TGYTQEDYTMLGSDDFFYVGGSPSTADL-----------PGSP---VSNNFMGCLKEVVY 443
Query: 339 NGVDV----TELAKKHKPQILMMGNVSFSCPQPQTV-PVTFLSSRSYLALPGNSGEDKVS 393
DV + LAK+ P++ + G V+F C T+ P+TF + S+++LP + + S
Sbjct: 444 KNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGS 503
Query: 394 VTFQFRTWNRAGHLLF--GELQRGSGS----------FVLFLKDGKLKLSLFQAGQSPRN 441
++F FRT G +LF G+ + + F + + DG L L L + +
Sbjct: 504 ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKI 563
Query: 442 VTAGAGLNDGQWHSVSFSAKWSHMNVVVDD--DTAVQPLVAVLIDSGDTYYFGGCLGNSS 499
+NDG+W+ V F + V+ P + ++D D Y GG N +
Sbjct: 564 KALLKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKA 623
Query: 500 GSGCKSPLG------GFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDR-CL 552
G + + G+ GC+R + I ++ D + Q + S ++ T + CL
Sbjct: 624 GLVFPTEVWTALLNYGYVGCIRDLFIDGQSKD--IRQMAEVQSTAGVKPSCSKETAKPCL 681
Query: 553 PSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGS 612
+ C++ G C W+ + CDC GTGY G +C + DGS
Sbjct: 682 SNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCERE-----------------ATVLSYDGS 724
Query: 613 GPLGPFLVYCNMTDSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAAGAGQLRAAVNLA 672
+ L T++ +R A + A + SA + AG+++ VNL
Sbjct: 725 MFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRD-SADTLRLELDAGRVKLTVNL- 782
Query: 673 ERCEQRLALRCGTARRPDSRDGTPLSWWVGRTNETHT--------SWGGSLPDAQKCTCG 724
+ + C +++ P+ T + + NE HT S ++ D Q T
Sbjct: 783 ----DCIRINCNSSKGPE----TLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQ 834
Query: 725 LEGNCIDSQYYCNCDAG---QNEWTSD--TIVLSQKEHLPVTQIVMTDTGQPHSEADYTL 779
+ G+ +++ N + G + + S + + + L + D + + + DY
Sbjct: 835 MAGDHTRLEFH-NIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCK-NGDIDY-- 890
Query: 780 GPLLCRGDKSFW------NSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENL 833
C + F + +F T++SY+ + + F FKTT G+ + N
Sbjct: 891 ----CELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS 946
Query: 834 GI-TDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVD 892
G DFI +EL + + FD+GNG + S P NDNQWH+V R+ ++L
Sbjct: 947 GDGNDFIVVEL-VKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDT--SNLHTV 1003
Query: 893 QLPQKMQPAPADGHVRLQLNSQLFI 917
++ K+ G L L S L+I
Sbjct: 1004 KIDTKITTQITAGARNLDLKSDLYI 1028
Score = 120 bits (301), Expect = 8e-27
Identities = 115/419 (27%), Positives = 182/419 (43%), Gaps = 21/419 (5%)
Query: 177 CAYKSEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHG-NHITLE 235
C ++ V+ +DG + L DV SL+F++ ++ GIL+ + + + LE
Sbjct: 712 CEREATVLSYDGSMFMKIQLPVVMHTEAEDV-SLRFRSQRAYGILMATTSRDSADTLRLE 770
Query: 236 LIKGKLVFFLNSGNAKLP--STIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVD-KHT 292
L G++ +N ++ S+ P TL G L+D WH+V + + TVD +
Sbjct: 771 LDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQA 830
Query: 293 HHFQAKGDSSNLDL-NFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHK 351
Q GD + L+ N E GI++ R + +F G L++L +NG+ +L K
Sbjct: 831 MTGQMAGDHTRLEFHNIET---GIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGD 887
Query: 352 PQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGE 411
+ N F PVTF + SY+AL + + FQF+T + G +L+
Sbjct: 888 IDYCEL-NARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS 946
Query: 412 LQRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAG--LNDGQWHSVSFSAKWSHMNVVV 469
G+ V+ L G L +F G + + LND QWH+V S S+++ V
Sbjct: 947 GD-GNDFIVVELVKGYLHY-VFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVK 1004
Query: 470 DDDTAVQPLVAVL--IDSGDTYYFGGCLGNSSGSGCK--SPLGGFQGCLRLITIGDKAVD 525
D + A +D Y GG + S K GFQGCL + + + D
Sbjct: 1005 IDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPD 1064
Query: 526 PILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCH 584
I AL ++ G + C C + G C Q WD FSCDC T ++G C+
Sbjct: 1065 LI---SDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN 1120
Score = 47.8 bits (112), Expect = 6e-05
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 34/213 (15%)
Query: 394 VTFQFRTWNRAGHLLFGELQRGSGSFV--LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDG 451
++FQ +T + G +L+ + G F+ + + G+L+LS P + A +NDG
Sbjct: 54 MSFQLKTRSARGLVLYFD-DEGFCDFLELILTRGGRLQLSFSIFCAEPATLLADTPVNDG 112
Query: 452 QWHSVSFSAKWSHMNVVVDDDTAVQPLVA-----VLIDSGDTYYFGGCLGNSSGSGCKSP 506
WHSV ++ + + +D A V + + SG + GG + K
Sbjct: 113 AWHSVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSG--LFVGGLPPELRAAALKLT 170
Query: 507 LGG------FQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDS----------CGITDR 550
L F+G +R + + V P+ ++++D C +
Sbjct: 171 LASVREREPFKGWIRDVRVNSSQVLPV--------DSGEVKLDDEPPNSGGGSPCEAGEE 222
Query: 551 CLPSYCEHGGECSQSWDTFSCDCLGTGYTGETC 583
C +GG CS D CDC TG+ G+ C
Sbjct: 223 GEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 255
Score = 46.6 bits (109), Expect = 1e-04
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 799 ETSYLHFPAFHGELTADVCFFFKTTVSSGV--FMENLGITDFIRIELRAPTEVTFSFDVG 856
E + FP ++ +++ F KT + G+ + ++ G DF+ + L + SF +
Sbjct: 37 EGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRLQLSFSIF 96
Query: 857 NGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQK 897
T+ + TP ND WH VR R + +L +DQ+ K
Sbjct: 97 CAE-PATLLADTPVNDGAWHSVRIRRQFRNTTLFIDQVEAK 136
Score = 40.4 bits (93), Expect = 0.010
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 31/192 (16%)
Query: 705 NETHTSWGGSLPDAQK------CTCGLEGNCIDSQYYCNCDA----GQNEWTSDTIVLSQ 754
+E S GGS +A + C G + +D Q C+C G++ D V
Sbjct: 206 DEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQEDNNVEG- 264
Query: 755 KEHLPVTQIVMTDTGQPHSEADYTLGPLLCRGDKSFWNSASFNTETSYLHFPAFHGELTA 814
+ ++M D G+ + +Y +F S F + S + E+T
Sbjct: 265 -----LAHLMMGDQGKSKGKEEYIA---------TFKGSEYFCYDLSQNPIQSSSDEITL 310
Query: 815 DVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPT-PFNDN 873
FKT +G+ + D++ + L+ V+ ++G+G E V+ FNDN
Sbjct: 311 S----FKTLQRNGLMLHTGKSADYVNLALKNGA-VSLVINLGSGAFEALVEPVNGKFNDN 365
Query: 874 QWHHVRAERNVK 885
WH V+ RN++
Sbjct: 366 AWHDVKVTRNLR 377
Score = 34.7 bits (78), Expect = 0.56
Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 16/181 (8%)
Query: 206 DVISLKFKAMQSNGILLHREGQHG--NHITLELIKGKLVFFLNSGNAKLPSTIAPVTLTL 263
D +++ F +Q +L+ + G +++ L + +GK+ N G + +
Sbjct: 1150 DRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES------ 1203
Query: 264 GSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGDSSNLDLNFEISFGGILSPGRSRA 323
++++D +H V VD + + L S I+ G+ +
Sbjct: 1204 NAIINDGKYHVVRFTRSGGNATLQVDSWP---VIERYPAGRQLTIFNSQATIIIGGKEQG 1260
Query: 324 FTRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNVSF--SCPQPQTVPVTFLSSRSYL 381
+ F G L LYYNG+ V +A ++ I ++GNV P T T + +S +
Sbjct: 1261 ---QPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEVPSSMTTESTATAMQSEM 1317
Query: 382 A 382
+
Sbjct: 1318 S 1318
>gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]
Length = 1547
Score = 164 bits (414), Expect = 6e-40
Identities = 191/801 (23%), Positives = 328/801 (40%), Gaps = 114/801 (14%)
Query: 183 VVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGKLV 242
+ F G Y L + P++ D I+L FK +Q NG++LH G+ +++ L L G +
Sbjct: 316 IATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHT-GKSADYVNLALKNGAVS 374
Query: 243 FFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSV---------------LIELLDTQVNFT 287
+N G+ + + PV +D WH V ++ L V +
Sbjct: 375 LVINLGSGAFEALVEPVN----GKFNDNAWHDVKVTRNLRQHSGIGHAMVNKLHCSVTIS 430
Query: 288 VDKH-THHFQAKGDSSNLDLNFEISFGGILS----PGRSRAFTRKSFHGCLENLYYNGVD 342
VD T + D + L + GG S PG +F GCL+ + Y D
Sbjct: 431 VDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSP---VSNNFMGCLKEVVYKNND 487
Query: 343 V----TELAKKHKPQILMMGNVSFSCPQPQTV-PVTFLSSRSYLALPGNSGEDKVSVTFQ 397
V + LAK+ P++ + G V+F C T+ P+TF + S+++LP + + S++F
Sbjct: 488 VRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSISFD 547
Query: 398 FRTWNRAGHLLF--GELQRGSGS----------FVLFLKDGKLKLSLFQAGQSPRNVTAG 445
FRT G +LF G+ + + F + + DG L L L + +
Sbjct: 548 FRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALL 607
Query: 446 AGLNDGQWHSVSFSAKWSHMNVVVDD--DTAVQPLVAVLIDSGDTYYFGGCLGNSSGSGC 503
+NDG+W+ V F + V+ P + ++D D Y GG N +G
Sbjct: 608 KKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVF 667
Query: 504 KSPLG------GFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDR-CLPSYC 556
+ + G+ GC+R + I ++ D + Q + S ++ T + CL + C
Sbjct: 668 PTEVWTALLNYGYVGCIRDLFIDGQSKD--IRQMAEVQSTAGVKPSCSKETAKPCLSNPC 725
Query: 557 EHGGECSQSWDTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSGPLG 616
++ G C W+ + CDC GTGY G +C + DGS +
Sbjct: 726 KNNGMCRDGWNRYVCDCSGTGYLGRSCERE-----------------ATVLSYDGSMFMK 768
Query: 617 PFLVYCNMTDSAWTVVRHGGPDAVTLRGAPSGHPLSAVSFAYAAGAGQLRAAVNLAERCE 676
L T++ +R A + A + SA + AG+++ VNL
Sbjct: 769 IQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRD-SADTLRLELDAGRVKLTVNL----- 822
Query: 677 QRLALRCGTARRPDSRDGTPLSWWVGRTNETHT--------SWGGSLPDAQKCTCGLEGN 728
+ + C +++ P+ T + + NE HT S ++ D Q T + G+
Sbjct: 823 DCIRINCNSSKGPE----TLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGD 878
Query: 729 CIDSQYYCNCDAG---QNEWTSD--TIVLSQKEHLPVTQIVMTDTGQPHSEADYTLGPLL 783
+++ N + G + + S + + + L + D + + + DY
Sbjct: 879 HTRLEFH-NIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCK-NGDIDY------ 930
Query: 784 CRGDKSFW------NSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGI-T 836
C + F + +F T++SY+ + + F FKTT G+ + N G
Sbjct: 931 CELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGN 990
Query: 837 DFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQ 896
DFI +EL + + FD+GNG + S P NDNQWH+V R+ ++L ++
Sbjct: 991 DFIVVEL-VKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDT--SNLHTVKIDT 1047
Query: 897 KMQPAPADGHVRLQLNSQLFI 917
K+ G L L S L+I
Sbjct: 1048 KITTQITAGARNLDLKSDLYI 1068
Score = 120 bits (301), Expect = 8e-27
Identities = 115/419 (27%), Positives = 182/419 (43%), Gaps = 21/419 (5%)
Query: 177 CAYKSEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHG-NHITLE 235
C ++ V+ +DG + L DV SL+F++ ++ GIL+ + + + LE
Sbjct: 752 CEREATVLSYDGSMFMKIQLPVVMHTEAEDV-SLRFRSQRAYGILMATTSRDSADTLRLE 810
Query: 236 LIKGKLVFFLNSGNAKLP--STIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVD-KHT 292
L G++ +N ++ S+ P TL G L+D WH+V + + TVD +
Sbjct: 811 LDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQA 870
Query: 293 HHFQAKGDSSNLDL-NFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHK 351
Q GD + L+ N E GI++ R + +F G L++L +NG+ +L K
Sbjct: 871 MTGQMAGDHTRLEFHNIET---GIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGD 927
Query: 352 PQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGE 411
+ N F PVTF + SY+AL + + FQF+T + G +L+
Sbjct: 928 IDYCEL-NARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS 986
Query: 412 LQRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAG--LNDGQWHSVSFSAKWSHMNVVV 469
G+ V+ L G L +F G + + LND QWH+V S S+++ V
Sbjct: 987 GD-GNDFIVVELVKGYLHY-VFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVK 1044
Query: 470 DDDTAVQPLVAVL--IDSGDTYYFGGCLGNSSGSGCK--SPLGGFQGCLRLITIGDKAVD 525
D + A +D Y GG + S K GFQGCL + + + D
Sbjct: 1045 IDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPD 1104
Query: 526 PILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCH 584
I AL ++ G + C C + G C Q WD FSCDC T ++G C+
Sbjct: 1105 LI---SDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN 1160
Score = 48.1 bits (113), Expect = 5e-05
Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 34/217 (15%)
Query: 394 VTFQFRTWNRAGHLLFGELQRGSGSFV--LFLKDGKLKLSLFQAGQSPRNVTAGAGLNDG 451
++FQ +T + G +L+ + G F+ + + G+L+LS P + A +NDG
Sbjct: 54 MSFQLKTRSARGLVLYFD-DEGFCDFLELILTRGGRLQLSFSIFCAEPATLLADTPVNDG 112
Query: 452 QWHSVSFSAKWSHMNVVVDDDTAVQPLVA-----VLIDSGDTYYFGGCLGNSSGSGCKSP 506
WHSV ++ + + +D A V + + SG + GG + K
Sbjct: 113 AWHSVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSG--LFVGGLPPELRAAALKLT 170
Query: 507 LGG------FQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDS----------CGITDR 550
L F+G +R + + V P+ ++++D C +
Sbjct: 171 LASVREREPFKGWIRDVRVNSSQVLPV--------DSGEVKLDDEPPNSGGGSPCEAGEE 222
Query: 551 CLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCHSSL 587
C +GG CS D CDC TG+ G+ C +
Sbjct: 223 GEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQEI 259
Score = 46.6 bits (109), Expect = 1e-04
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 799 ETSYLHFPAFHGELTADVCFFFKTTVSSGV--FMENLGITDFIRIELRAPTEVTFSFDVG 856
E + FP ++ +++ F KT + G+ + ++ G DF+ + L + SF +
Sbjct: 37 EGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRLQLSFSIF 96
Query: 857 NGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQK 897
T+ + TP ND WH VR R + +L +DQ+ K
Sbjct: 97 CAE-PATLLADTPVNDGAWHSVRIRRQFRNTTLFIDQVEAK 136
Score = 39.3 bits (90), Expect = 0.023
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 34/210 (16%)
Query: 705 NETHTSWGGSLPDAQK------CTCGLEGNCIDSQYYCNCDAG--QNEWTSDTIVLSQKE 756
+E S GGS +A + C G + +D Q C+C + + S I +
Sbjct: 206 DEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQEIKFGLQC 265
Query: 757 HLPVT-------QIVMTDTGQPHSEADYTLGPL--LCRGDK-----------SFWNSASF 796
LPV + +T +P +E D + L L GD+ +F S F
Sbjct: 266 VLPVLLHDNDQGKYCCINTAKPLTEKDNNVEGLAHLMMGDQGKSKGKEEYIATFKGSEYF 325
Query: 797 NTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDVG 856
+ S + E+T FKT +G+ + D++ + L+ V+ ++G
Sbjct: 326 CYDLSQNPIQSSSDEITLS----FKTLQRNGLMLHTGKSADYVNLALKNGA-VSLVINLG 380
Query: 857 NGPCEVTVQSPT-PFNDNQWHHVRAERNVK 885
+G E V+ FNDN WH V+ RN++
Sbjct: 381 SGAFEALVEPVNGKFNDNAWHDVKVTRNLR 410
Score = 32.7 bits (73), Expect = 2.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 329 FHGCLENLYYNGVDVTELAKKHKPQILMMGNVSF--SCPQPQTVPVTFLSSRSYLA 382
F G L LYYNG+ V +A ++ I ++GNV P T T + +S ++
Sbjct: 1333 FQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEVPSSMTTESTATAMQSEMS 1388
Score = 31.6 bits (70), Expect = 4.8
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 834 GITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQ 893
G+ D++ + + ++ F+VG + +S ND ++H VR R+ A+LQVD
Sbjct: 1213 GLGDYLELHIHQG-KIGVKFNVGTDDIAIE-ESNAIINDGKYHVVRFTRSGGNATLQVDS 1270
Query: 894 LPQ-KMQPAPADGHVRLQLNSQ 914
P + PA + + RL + Q
Sbjct: 1271 WPVIERYPAGNNDNERLAIARQ 1292
>gi|239752499 PREDICTED: similar to cell recognition molecule Caspr2,
partial [Homo sapiens]
Length = 140
Score = 146 bits (368), Expect = 1e-34
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 993 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 1052
GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT
Sbjct: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
Query: 1053 EFNAVKSLILGKVL 1066
EFNAVKSLILGKVL
Sbjct: 62 EFNAVKSLILGKVL 75
>gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]
Length = 1642
Score = 135 bits (341), Expect = 2e-31
Identities = 119/446 (26%), Positives = 191/446 (42%), Gaps = 60/446 (13%)
Query: 183 VVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHGNHITLELIKGKLV 242
V F G Y L P++ D I+L F+ +Q NG++LH G+ +++ L L G +
Sbjct: 265 VATFKGNEFFCYDLSHNPIQSSTDEITLAFRTLQRNGLMLHT-GKSADYVNLSLKSGAVW 323
Query: 243 FFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIE--------LLDTQVNFTVDKH-TH 293
+N G+ + + PV +D WH V + + V +VD T
Sbjct: 324 LVINLGSGAFEALVEPVN----GKFNDNAWHDVRVTRNLRQHAGIGHAMVTISVDGILTT 379
Query: 294 HFQAKGDSSNLDLNFEISFGGILSPGRSR---AFTRKSFHGCLENLYYNGVD----VTEL 346
+ D + L + GG SP + + +F GCL+++ Y D ++ L
Sbjct: 380 TGYTQEDYTMLGSDDFFYIGG--SPNTADLPGSPVSNNFMGCLKDVVYKNNDFKLELSRL 437
Query: 347 AKKHKPQILMMGNVSFSCPQPQTV-PVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAG 405
AK+ P++ + G++SF C + PVTF S +++ALP S + S++ FRT G
Sbjct: 438 AKEGDPKMKLQGDLSFRCEDVAALDPVTFESPEAFVALPRWSAKRTGSISLDFRTTEPNG 497
Query: 406 HLLFGELQRGSGS------------FVLFLKDGKLKLSLFQAGQSPRNVTAGAGLNDGQW 453
LLF + +R G F + L DG L L L + + +NDG+W
Sbjct: 498 LLLFSQGRRAGGGAGSHSSAQRADYFAMELLDGHLYLLLDMGSGGIKLRASSRKVNDGEW 557
Query: 454 HSVSFSAKWSHMNVVVDDDTAVQPLVAV----LIDSGDTYYFGGCLGNSSGSGCKSPL-- 507
V F ++ V+ + P +A ++D Y GG G PL
Sbjct: 558 CHVDFQRDGRKGSISVNSRST--PFLATGDSEILDLESELYLGGL---PEGGRVDLPLPP 612
Query: 508 --------GGFQGCLRLITIGDKAVD--PILVQQGALGSFRDLQIDSCGITDRCLPSYCE 557
G+ GC+R + I ++ D + QGA+G S +C + C
Sbjct: 613 EVWTAALRAGYVGCVRDLFIDGRSRDLRGLAEAQGAVGV---APFCSRETLKQCASAPCR 669
Query: 558 HGGECSQSWDTFSCDCLGTGYTGETC 583
+GG C + W+ F CDC+GTG+ G C
Sbjct: 670 NGGVCREGWNRFICDCIGTGFLGRVC 695
Score = 118 bits (295), Expect = 4e-26
Identities = 112/415 (26%), Positives = 173/415 (41%), Gaps = 23/415 (5%)
Query: 177 CAYKSEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHG-NHITLE 235
C ++ V+ +DG + L DV SL+F + ++ G+++ + + + LE
Sbjct: 695 CEREATVLSYDGSMYMKIMLPNAMHTEAEDV-SLRFMSQRAYGLMMATTSRESADTLRLE 753
Query: 236 LIKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHF 295
L G++ +N G P TL G L+D WH+V + + +VD T
Sbjct: 754 LDGGQMKLTVNLGKG-------PETLFAGHKLNDNEWHTVRVVRRGKSLQLSVDNVTVEG 806
Query: 296 QAKGDSSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQIL 355
Q G +++ L F GI++ R + +F G L L +NG + K
Sbjct: 807 QMAG--AHMRLEFHNIETGIMTERRFISVVPSNFIGHLSGLVFNGQPYMDQCKDGDITYC 864
Query: 356 MMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRG 415
+ N F PVTF S SYLAL + + FQF+T G LLF G
Sbjct: 865 EL-NARFGLRAIVADPVTFKSRSSYLALATLQAYASMHLFFQFKTTAPDGLLLFNS-GNG 922
Query: 416 SGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAG--LNDGQWHSVSFSAKWSHMNVV-VDDD 472
+ V+ L G + +F G P + + +ND QWH+V S +++ + +D
Sbjct: 923 NDFIVIELVKGYIHY-VFDLGNGPSLMKGNSDKPVNDNQWHNVVVSRDPGNVHTLKIDSR 981
Query: 473 TAVQPLVAVL-IDSGDTYYFGGCLGNSSGSGCK--SPLGGFQGCLRLITIGDKAVDPILV 529
T Q +D Y GG N + K + GFQGCL + + + D I
Sbjct: 982 TVTQHSNGARNLDLKGELYIGGLSKNMFSNLPKLVASRDGFQGCLASVDLNGRLPDLIA- 1040
Query: 530 QQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCH 584
AL ++ G + C C + G C Q WD F+CDC T Y G C+
Sbjct: 1041 --DALHRIGQVERGCDGPSTTCTEESCANQGVCLQQWDGFTCDCTMTSYGGPVCN 1093
Score = 60.1 bits (144), Expect = 1e-08
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 795 SFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGI-TDFIRIELRAPTEVTFSF 853
+F + +SYL + + F FKTT G+ + N G DFI IEL + + F
Sbjct: 881 TFKSRSSYLALATLQAYASMHLFFQFKTTAPDGLLLFNSGNGNDFIVIEL-VKGYIHYVF 939
Query: 854 DVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNS 913
D+GNGP + S P NDNQWH+V R+ ++ ++ + ++G L L
Sbjct: 940 DLGNGPSLMKGNSDKPVNDNQWHNVVVSRD--PGNVHTLKIDSRTVTQHSNGARNLDLKG 997
Query: 914 QLFI 917
+L+I
Sbjct: 998 ELYI 1001
Score = 45.8 bits (107), Expect = 2e-04
Identities = 73/331 (22%), Positives = 122/331 (36%), Gaps = 51/331 (15%)
Query: 807 AFHGELTADVCFFFKTTVSSGVFMENLG--ITDFIRIELRAPTEVTFSFDVGNGPCEVTV 864
A H E DV F + + G+ M D +R+EL ++ + ++G GP T+
Sbjct: 717 AMHTE-AEDVSLRFMSQRAYGLMMATTSRESADTLRLELDGG-QMKLTVNLGKGP--ETL 772
Query: 865 QSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQ--------LNSQLF 916
+ NDN+WH VR R K L VD + + Q A A H+RL+ + + F
Sbjct: 773 FAGHKLNDNEWHTVRVVRRGKSLQLSVDNVTVEGQMAGA--HMRLEFHNIETGIMTERRF 830
Query: 917 IEI--SAYFATGSSMTYHFQEH---------------------------YTLSENSSSLV 947
I + S + S + ++ Q + T SS L
Sbjct: 831 ISVVPSNFIGHLSGLVFNGQPYMDQCKDGDITYCELNARFGLRAIVADPVTFKSRSSYLA 890
Query: 948 SSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNP 1007
+ + + F+TT LLL+ S +++ + L I Y D P
Sbjct: 891 LATLQ--AYASMHLFFQFKTTAPDGLLLFNSGNGNDFIVIELVKG---YIHYVFDLGNGP 945
Query: 1008 DAFTFDF-KNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVL 1066
+ K + D Q H V ++R+ V S + + L +G +
Sbjct: 946 SLMKGNSDKPVNDNQWHNVVVSRDPGNVHTLKIDSRTVTQHSNGARNLDLKGELYIGGLS 1005
Query: 1067 EAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1097
+ ++ A+ GF GCL++V P
Sbjct: 1006 KNMFSNLPKLVASRDGFQGCLASVDLNGRLP 1036
Score = 40.0 bits (92), Expect = 0.013
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 813 TADVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPT-PFN 871
T ++ F+T +G+ + D++ + L++ V ++G+G E V+ FN
Sbjct: 287 TDEITLAFRTLQRNGLMLHTGKSADYVNLSLKSGA-VWLVINLGSGAFEALVEPVNGKFN 345
Query: 872 DNQWHHVRAERNVK 885
DN WH VR RN++
Sbjct: 346 DNAWHDVRVTRNLR 359
Score = 38.9 bits (89), Expect = 0.030
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 961 ITLSFRTTRSPSLLLYVSSFYE-EYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMAD 1019
++ S RT + +LLLY+ + ++L ++L + G L++R+ L + P D +AD
Sbjct: 53 LSFSLRTNATRALLLYLDDGGDCDFLELLLVD-GRLRLRFTLSCAE-PATLQLDTP-VAD 109
Query: 1020 GQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAA 1079
+ H V + R+ + V+ A+ + S E L +G G PD R +A
Sbjct: 110 DRWHMVLLTRDARRTALAVDGEARAAEVRSKRREMQVASDLFVG------GIPPDVRLSA 163
Query: 1080 TS--------GFTGCLSAVRFGRAAPLKAALRPSGPSRVTVRGHVAPMAR-CAAG 1125
+ F G L+ ++ G P A L G T AP CA G
Sbjct: 164 LTLSTVKYEPPFRGLLANLKLGERPP--ALLGSQGLRGATADPLCAPARNPCANG 216
Score = 35.4 bits (80), Expect = 0.33
Identities = 48/219 (21%), Positives = 81/219 (36%), Gaps = 23/219 (10%)
Query: 386 NSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAG 445
+SGE ++F RT LL+ + L L DG+L+L + P +
Sbjct: 49 SSGE----LSFSLRTNATRALLLYLDDGGDCDFLELLLVDGRLRLRFTLSCAEPATLQLD 104
Query: 446 AGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVAVL--IDSGDTYYFGGCLGNSSGSGC 503
+ D +WH V + + VD + + + + + GG + S
Sbjct: 105 TPVADDRWHMVLLTRDARRTALAVDGEARAAEVRSKRREMQVASDLFVGGIPPDVRLSAL 164
Query: 504 KSPL----GGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSY--CE 557
F+G L + +G++ +L QG G+ D C P+ C
Sbjct: 165 TLSTVKYEPPFRGLLANLKLGERP-PALLGSQGLRGATAD---------PLCAPARNPCA 214
Query: 558 HGGECSQ-SWDTFSCDCLGTGYTGETCHSSLYEQSCEAH 595
+GG C+ + CDC TG+ G+ C + AH
Sbjct: 215 NGGLCTVLAPGEVGCDCSHTGFGGKFCSEEEHPMEGPAH 253
Score = 33.5 bits (75), Expect = 1.3
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 787 DKSFWNSASFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGI----------- 835
D + + +F + +++ P + + T + F+TT +G+ + + G
Sbjct: 457 DVAALDPVTFESPEAFVALPRWSAKRTGSISLDFRTTEPNGLLLFSQGRRAGGGAGSHSS 516
Query: 836 ---TDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVD 892
D+ +EL + D+G+G ++ S ND +W HV +R+ + S+ V+
Sbjct: 517 AQRADYFAMEL-LDGHLYLLLDMGSGGIKLRASS-RKVNDGEWCHVDFQRDGRKGSISVN 574
Query: 893 QLPQKMQPAPADGHVR-LQLNSQLFI 917
+ P A G L L S+L++
Sbjct: 575 ---SRSTPFLATGDSEILDLESELYL 597
Score = 32.7 bits (73), Expect = 2.1
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 834 GITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPF-NDNQWHHVRAERNVKGASLQVD 892
G+ D++++ + T V F+VG ++T+ P +D ++H VR R+ A+LQVD
Sbjct: 1146 GLGDYLQLHIDQGT-VGVIFNVGTD--DITIDEPNAIVSDGKYHVVRFTRSGGNATLQVD 1202
Query: 893 QLP-QKMQPAPADGHVRLQLNSQLFIEI 919
P + PA G NSQ I+I
Sbjct: 1203 SWPVNERYPA---GRQLTIFNSQAAIKI 1227
Score = 32.3 bits (72), Expect = 2.8
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 241 LVFFLNSGNAKLPSTIA---PVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQA 297
L L G +L T++ P TL L + + D WH VL+ + VD +
Sbjct: 78 LELLLVDGRLRLRFTLSCAEPATLQLDTPVADDRWHMVLLTRDARRTALAVDGEARAAEV 137
Query: 298 KGDSSNLDLNFEISFGGILSPGRSRAFTRKS------FHGCLENL 336
+ + + ++ GGI R A T + F G L NL
Sbjct: 138 RSKRREMQVASDLFVGGIPPDVRLSALTLSTVKYEPPFRGLLANL 182
>gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]
Length = 1061
Score = 117 bits (292), Expect = 9e-26
Identities = 109/418 (26%), Positives = 179/418 (42%), Gaps = 20/418 (4%)
Query: 177 CAYKSEVVYFDGQSALLYTLDKKPLKPIRDVISLKFKAMQSNGILLHREGQHG-NHITLE 235
C ++ ++ +DG + + DV S +F + ++ G+L+ + + + LE
Sbjct: 306 CEREASILSYDGSMYMKIIMPMVMHTEAEDV-SFRFMSQRAYGLLVATTSRDSADTLRLE 364
Query: 236 LIKGKLVFFLNSGNAKLP--STIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTH 293
L G++ +N ++ S+ P TL G L+D WH+V + + TVD
Sbjct: 365 LDGGRVKLMVNLDCIRINCNSSKGPETLYAGQKLNDNEWHTVRVVRRGKSLKLTVDDDVA 424
Query: 294 HFQAKGDSSNLDL-NFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKP 352
GD + L+ N E GI++ R + SF G L++L +NG+ +L K
Sbjct: 425 EGTMVGDHTRLEFHNIET---GIMTEKRYISVVPSSFIGHLQSLMFNGLLYIDLCKNGDI 481
Query: 353 QILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGEL 412
+ F PVTF + SYL+L + + FQF+T + G +LF
Sbjct: 482 DYCEL-KARFGLRNIIADPVTFKTKSSYLSLATLQAYTSMHLFFQFKTTSPDGFILFNSG 540
Query: 413 QRGSGSFVLFLKDGKLKLSLFQAGQSPRNVTAGAG--LNDGQWHSVSFSAKWSHMNVVVD 470
G+ + L G + +F G P + + LND QWH+V + S+ + +
Sbjct: 541 D-GNDFIAVELVKGYIHY-VFDLGNGPNVIKGNSDRPLNDNQWHNVVITRDNSNTHSLKV 598
Query: 471 DDTAVQPLV--AVLID-SGDTYYFGGCLGNSSG-SGCKSPLGGFQGCLRLITIGDKAVDP 526
D V ++ A +D GD Y G G S + GFQGCL + + + D
Sbjct: 599 DTKVVTQVINGAKNLDLKGDLYMAGLAQGMYSNLPKLVASRDGFQGCLASVDLNGRLPDL 658
Query: 527 ILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGETCH 584
I AL ++ G + C C + G C Q W+ F+CDC T Y+G C+
Sbjct: 659 I---NDALHRSGQIERGCEGPSTTCQEDSCANQGVCMQQWEGFTCDCSMTSYSGNQCN 713
Score = 84.3 bits (207), Expect = 6e-16
Identities = 75/286 (26%), Positives = 121/286 (42%), Gaps = 36/286 (12%)
Query: 328 SFHGCLENLYYNGVDV----TELAKKHKPQILMMGNVSFSCPQPQTV-PVTFLSSRSYLA 382
+F GCL+ + Y D+ + LA+ ++ + G V F C T+ P+ F + +Y++
Sbjct: 27 NFMGCLKEVVYKNNDIRLELSRLARIADTKMKIYGEVVFKCENVATLDPINFETPEAYIS 86
Query: 383 LPGNSGEDKVSVTFQFRTWNRAGHLLF--GELQRGSGS----------FVLFLKDGKLKL 430
LP + + S++F FRT G +LF G+ Q + F + L DG L L
Sbjct: 87 LPKWNTKRMGSISFDFRTTEPNGLILFTHGKPQERKDARSQKNTKVDFFAVELLDGNLYL 146
Query: 431 SLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLVAV----LIDSG 486
L + + NDG+W+ V + V+ P A ++D
Sbjct: 147 LLDMGSGTIKVKATQKKANDGEWYHVDIQRDGRSGTISVNSRRT--PFTASGESEILDLE 204
Query: 487 DTYYFGGCLGNSSGSGCKSPLG------GFQGCLRLITIG--DKAVDPILVQQGALGSFR 538
Y GG N +G + L G+ GC+R + I K + + Q A G
Sbjct: 205 GDMYLGGLPENRAGLILPTELWTAMLNYGYVGCIRDLFIDGRSKNIRQLAEMQNAAG--- 261
Query: 539 DLQIDSCGITDRCLPSY-CEHGGECSQSWDTFSCDCLGTGYTGETC 583
++ ++ + SY C++ C W+ F CDC GTGY G TC
Sbjct: 262 -VKSSCSRMSAKQCDSYPCKNNAVCKDGWNRFICDCTGTGYWGRTC 306
Score = 63.2 bits (152), Expect = 1e-09
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 795 SFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGI-TDFIRIELRAPTEVTFSF 853
+F T++SYL + + F FKTT G + N G DFI +EL + + F
Sbjct: 501 TFKTKSSYLSLATLQAYTSMHLFFQFKTTSPDGFILFNSGDGNDFIAVEL-VKGYIHYVF 559
Query: 854 DVGNGPCEVTVQSPTPFNDNQWHHVRAER-NVKGASLQVDQLPQKMQPAPADGHVRLQLN 912
D+GNGP + S P NDNQWH+V R N SL+VD K+ +G L L
Sbjct: 560 DLGNGPNVIKGNSDRPLNDNQWHNVVITRDNSNTHSLKVD---TKVVTQVINGAKNLDLK 616
Query: 913 SQLFI 917
L++
Sbjct: 617 GDLYM 621
Score = 52.4 bits (124), Expect = 3e-06
Identities = 71/340 (20%), Positives = 123/340 (36%), Gaps = 76/340 (22%)
Query: 208 ISLKFKAMQSNGILLHREGQHGNH-------------ITLELIKGKLVFFLN--SGNAKL 252
IS F+ + NG++L G+ +EL+ G L L+ SG K+
Sbjct: 98 ISFDFRTTEPNGLILFTHGKPQERKDARSQKNTKVDFFAVELLDGNLYLLLDMGSGTIKV 157
Query: 253 PSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGDSSNLDLNFEISF 312
+T +D W+ V I+ +V+ F A G+S LDL ++
Sbjct: 158 KATQKKA--------NDGEWYHVDIQRDGRSGTISVNSRRTPFTASGESEILDLEGDMYL 209
Query: 313 GG--------ILSPGRSRAFTRKSFHGCLENLYYNG--VDVTELAKKHKPQILMMGNVSF 362
GG IL A + GC+ +L+ +G ++ +LA+ +
Sbjct: 210 GGLPENRAGLILPTELWTAMLNYGYVGCIRDLFIDGRSKNIRQLAEMQNAAGVKSSCSRM 269
Query: 363 SCPQPQTVPV-----------TFLSSRSYLALPGNSGEDKVS------------------ 393
S Q + P F+ + G + E + S
Sbjct: 270 SAKQCDSYPCKNNAVCKDGWNRFICDCTGTGYWGRTCEREASILSYDGSMYMKIIMPMVM 329
Query: 394 ------VTFQFRTWNRAGHLLFGELQRGSGSFVLFLKDGKLKLSL--------FQAGQSP 439
V+F+F + G L+ + + + L L G++KL + + + P
Sbjct: 330 HTEAEDVSFRFMSQRAYGLLVATTSRDSADTLRLELDGGRVKLMVNLDCIRINCNSSKGP 389
Query: 440 RNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAVQPLV 479
+ AG LND +WH+V + + + VDDD A +V
Sbjct: 390 ETLYAGQKLNDNEWHTVRVVRRGKSLKLTVDDDVAEGTMV 429
Score = 41.6 bits (96), Expect = 0.005
Identities = 75/309 (24%), Positives = 113/309 (36%), Gaps = 68/309 (22%)
Query: 863 TVQSPTPFNDNQWHHVRAERNVKGASLQVDQ-----------------------LPQK-- 897
T+ + NDN+WH VR R K L VD + +K
Sbjct: 391 TLYAGQKLNDNEWHTVRVVRRGKSLKLTVDDDVAEGTMVGDHTRLEFHNIETGIMTEKRY 450
Query: 898 --MQPAPADGHVR-LQLNSQLFI-----------EISAYFATGSSMTYHFQEHYTLSENS 943
+ P+ GH++ L N L+I E+ A F + + + T S
Sbjct: 451 ISVVPSSFIGHLQSLMFNGLLYIDLCKNGDIDYCELKARFGLRNIIA----DPVTFKTKS 506
Query: 944 SSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDR 1003
S L SL T + F+TT +L+ S ++++V L I Y D
Sbjct: 507 SYL--SLATLQAYTSMHLFFQFKTTSPDGFILFNSGDGNDFIAVELVKG---YIHYVFDL 561
Query: 1004 HQNPDAFTFDF-KNMADGQLHQVKINREEAVV-MVEVNQSAKKQVILSSGTEFNAVKSLI 1061
P+ + + + D Q H V I R+ + ++V+ QVI N K+L
Sbjct: 562 GNGPNVIKGNSDRPLNDNQWHNVVITRDNSNTHSLKVDTKVVTQVI-------NGAKNLD 614
Query: 1062 LGKVLEAAG------ADPDTRRAATSGFTGCLSAVRFGRAAP--LKAALRPSGPSRVTVR 1113
L L AG ++ A+ GF GCL++V P + AL SG R
Sbjct: 615 LKGDLYMAGLAQGMYSNLPKLVASRDGFQGCLASVDLNGRLPDLINDALHRSGQIE---R 671
Query: 1114 GHVAPMARC 1122
G P C
Sbjct: 672 GCEGPSTTC 680
Score = 40.4 bits (93), Expect = 0.010
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 820 FKTTVSSGVFME---NLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWH 876
F TTV G+ + G+ DF+++ + ++ F++G + + TP ND ++H
Sbjct: 749 FSTTVKDGILVRIDSAPGLGDFLQLHIEQG-KIGVVFNIGTVDISIK-EERTPVNDGKYH 806
Query: 877 HVRAERNVKGASLQVDQLP 895
VR RN A+LQVD P
Sbjct: 807 VVRFTRNGGNATLQVDNWP 825
Score = 38.1 bits (87), Expect = 0.051
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 20/138 (14%)
Query: 795 SFNTETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLG--------------ITDFIR 840
+F T +Y+ P ++ + + F F+TT +G+ + G DF
Sbjct: 77 NFETPEAYISLPKWNTKRMGSISFDFRTTEPNGLILFTHGKPQERKDARSQKNTKVDFFA 136
Query: 841 IELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQP 900
+EL + D+G+G +V + ND +W+HV +R+ + ++ V+ + P
Sbjct: 137 VEL-LDGNLYLLLDMGSGTIKVKA-TQKKANDGEWYHVDIQRDGRSGTISVN---SRRTP 191
Query: 901 APADGHVR-LQLNSQLFI 917
A G L L +++
Sbjct: 192 FTASGESEILDLEGDMYL 209
Score = 35.4 bits (80), Expect = 0.33
Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 25/202 (12%)
Query: 185 YFDGQSA--LLYTLDKKPLKPIR-DVISLKFKAMQSNGILLHREGQHG--NHITLELIKG 239
Y G+S +LYT R D +++ F +GIL+ + G + + L + +G
Sbjct: 719 YIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQG 778
Query: 240 KL--VFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKH--THHF 295
K+ VF + + + + PV +D +H V VD H+
Sbjct: 779 KIGVVFNIGTVDISIKEERTPV--------NDGKYHVVRFTRNGGNATLQVDNWPVNEHY 830
Query: 296 QAKGDSSNLDLNFEISFGGILSPGRSRAFTRKSFHGCLENLYYNGVDVTELAKKHKPQIL 355
+ + +I+ GG GR F G L LYY+G+ V +A ++ P I
Sbjct: 831 PTGRQLTIFNTQAQIAIGG-KDKGRL-------FQGQLSGLYYDGLKVLNMAAENNPNIK 882
Query: 356 MMGNVSFSCPQPQTVPVTFLSS 377
+ G+V P + T +S
Sbjct: 883 INGSVRLVGEVPSILGTTQTTS 904
>gi|167830475 milk fat globule-EGF factor 8 protein isoform a [Homo
sapiens]
Length = 387
Score = 90.1 bits (222), Expect = 1e-17
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 15/160 (9%)
Query: 31 CDSPLA---SALPRSSFSSSSELSS------SHGPGFSRLNRRDGAGGWTPLVSNKYQWL 81
C +PL +++P ++SS + S P ++RL+++ W QWL
Sbjct: 230 CANPLGLKNNSIPDKQITASSSYKTWGLHLFSWNPSYARLDKQGNFNAWVAGSYGNDQWL 289
Query: 82 QIDLGERMEVTAVATQG--GYGSSDWVTSYLLMFSDGGRNWKQYR--REESIWGFPGNTN 137
Q+DLG EVT + TQG +GS +V SY + +S+ NW +Y+ R S FPGN +
Sbjct: 290 QVDLGSSKEVTGIITQGARNFGSVQFVASYKVAYSNDSANWTEYQDPRTGSSKIFPGNWD 349
Query: 138 ADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
S + P AR++R LP+AW+ RI +R+E+ GC
Sbjct: 350 NHSHKKNLFETPILARYVRILPVAWH--NRIALRLELLGC 387
Score = 58.9 bits (141), Expect = 3e-08
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 23/171 (13%)
Query: 17 TQTWSPVGAGNPPDCDSPLASALPRSSFSSSSELSSSHG-PGFSRLNRRDGAGGWTPLVS 75
T+ P+G N +S +A++ R +F L H P +RLNR WTP +
Sbjct: 68 TKCVEPLGLENGNIANSQIAASSVRVTF-----LGLQHWVPELARLNRAGMVNAWTPSSN 122
Query: 76 NKYQWLQIDLGERMEVTAVATQGG--YGSSDWVTSYLLMFSDGGRNW-------KQYRRE 126
+ W+Q++L RM VT V TQG S +++ ++ + +S G + K+++
Sbjct: 123 DDNPWIQVNLLRRMWVTGVVTQGASRLASHEYLKAFKVAYSLNGHEFDFIHDVNKKHKE- 181
Query: 127 ESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
F GN N ++V + P EA+++R P + + +R E+ GC
Sbjct: 182 -----FVGNWNKNAVHVNLFETPVEAQYVRLYPTSCHT--ACTLRFELLGC 225
>gi|105990535 coagulation factor V precursor [Homo sapiens]
Length = 2224
Score = 85.9 bits (211), Expect = 2e-16
Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 31 CDSPLA---SALPRSSFSSSSELSSSHG----PGFSRLNRRDGAGGWTPLVSNKYQWLQI 83
C +PL + ++SS S G P +RLN + W +N QWL+I
Sbjct: 2066 CSTPLGMENGKIENKQITASSFKKSWWGDYWEPFRARLNAQGRVNAWQAKANNNKQWLEI 2125
Query: 84 DLGERMEVTAVATQG--GYGSSDWVTSYLLMFSDGGRNWKQYRREESIWG--FPGNTNAD 139
DL + ++TA+ TQG S +V SY + +S+ G WK YR + S+ F GNTN
Sbjct: 2126 DLLKIKKITAIITQGCKSLSSEMYVKSYTIHYSEQGVEWKPYRLKSSMVDKIFEGNTNTK 2185
Query: 140 SVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
V PP +RF+R +P WN I +R+E++GC
Sbjct: 2186 GHVKNFFNPPIISRFIRVIPKTWNQ--SIALRLELFGC 2221
Score = 60.8 bits (146), Expect = 7e-09
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 30 DCDSP--LASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWT--PLVSN--KYQWLQI 83
DC P L++ + S +SE P +RLN W+ L + W+Q+
Sbjct: 1906 DCRMPMGLSTGIISDSQIKASEFLGYWEPRLARLNNGGSYNAWSVEKLAAEFASKPWIQV 1965
Query: 84 DLGERMEVTAVATQGG--YGSSDWVTSYLLMFSDGGRNWKQYRREES--IWGFPGNTNAD 139
D+ + + +T + TQG Y S + T + + +S NW+ ++ + + F GN++A
Sbjct: 1966 DMQKEVIITGIQTQGAKHYLKSCYTTEFYVAYSSNQINWQIFKGNSTRNVMYFNGNSDAS 2025
Query: 140 SVVHYRLQPPFEARFLRFLPL-AWNPRGRIGMRIEVYGC 177
++ + PP AR++R P A+N R +R+E+ GC
Sbjct: 2026 TIKENQFDPPIVARYIRISPTRAYN---RPTLRLELQGC 2061
>gi|62420886 discoidin domain receptor family, member 2 precursor
[Homo sapiens]
Length = 855
Score = 84.3 bits (207), Expect = 6e-16
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 8 VLKVLLLLPTQTWSPVGAGNPPDCDSPLASA---LPRSSFSSSSELSSSHGPGFSRLNRR 64
+L + LLLP + S NP C PL + +P ++SS+ S S + RL+
Sbjct: 8 LLVLFLLLPILS-SAKAQVNPAICRYPLGMSGGQIPDEDITASSQWSESTAAKYGRLDSE 66
Query: 65 DGAGGWTPLV----SNKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLLMFSDGG 117
+G G W P + + ++LQIDL +T V TQG + ++ Y + +S G
Sbjct: 67 EGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG 126
Query: 118 RNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
W +R GN+N + L+PP ARF+RF+P+ + + MR+E+YGC
Sbjct: 127 TRWISWRNRHGKQVLDGNSNPYDIFLKDLEPPIVARFVRFIPVT-DHSMNVCMRVELYGC 185
Query: 178 AYKSEVVYFDGQSALLYTL 196
+ +V ++ + + L
Sbjct: 186 VWLDGLVSYNAPAGQQFVL 204
>gi|62420884 discoidin domain receptor family, member 2 precursor
[Homo sapiens]
Length = 855
Score = 84.3 bits (207), Expect = 6e-16
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 8 VLKVLLLLPTQTWSPVGAGNPPDCDSPLASA---LPRSSFSSSSELSSSHGPGFSRLNRR 64
+L + LLLP + S NP C PL + +P ++SS+ S S + RL+
Sbjct: 8 LLVLFLLLPILS-SAKAQVNPAICRYPLGMSGGQIPDEDITASSQWSESTAAKYGRLDSE 66
Query: 65 DGAGGWTPLV----SNKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLLMFSDGG 117
+G G W P + + ++LQIDL +T V TQG + ++ Y + +S G
Sbjct: 67 EGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG 126
Query: 118 RNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
W +R GN+N + L+PP ARF+RF+P+ + + MR+E+YGC
Sbjct: 127 TRWISWRNRHGKQVLDGNSNPYDIFLKDLEPPIVARFVRFIPVT-DHSMNVCMRVELYGC 185
Query: 178 AYKSEVVYFDGQSALLYTL 196
+ +V ++ + + L
Sbjct: 186 VWLDGLVSYNAPAGQQFVL 204
>gi|38327632 discoidin domain receptor family, member 1 isoform b
[Homo sapiens]
Length = 876
Score = 79.0 bits (193), Expect = 3e-14
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLAS---ALPRSSFSSSSELSSSHGPG 57
M A + L +LLL+ + G +P C L +P S S+SS S S
Sbjct: 1 MGPEALSSLLLLLLVASGDADMKGHFDPAKCRYALGMQDRTIPDSDISASSSWSDSTAAR 60
Query: 58 FSRLNRRDGAGGWTPLVS---NKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLL 111
SRL DG G W P S + ++LQ+DL V V TQG + ++ SY L
Sbjct: 61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120
Query: 112 MFSDGGRNWKQYRREESIWG---FPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRI 168
+S GR W ++ WG GN + + VV L PP AR +RF P A +
Sbjct: 121 RYSRDGRRWMGWKDR---WGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMS-V 176
Query: 169 GMRIEVYGCAYKSEVVYF 186
+R+E+YGC ++ ++ +
Sbjct: 177 CLRVELYGCLWRDGLLSY 194
>gi|83977452 discoidin domain receptor family, member 1 isoform c
[Homo sapiens]
Length = 919
Score = 79.0 bits (193), Expect = 3e-14
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLAS---ALPRSSFSSSSELSSSHGPG 57
M A + L +LLL+ + G +P C L +P S S+SS S S
Sbjct: 1 MGPEALSSLLLLLLVASGDADMKGHFDPAKCRYALGMQDRTIPDSDISASSSWSDSTAAR 60
Query: 58 FSRLNRRDGAGGWTPLVS---NKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLL 111
SRL DG G W P S + ++LQ+DL V V TQG + ++ SY L
Sbjct: 61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120
Query: 112 MFSDGGRNWKQYRREESIWG---FPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRI 168
+S GR W ++ WG GN + + VV L PP AR +RF P A +
Sbjct: 121 RYSRDGRRWMGWKDR---WGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMS-V 176
Query: 169 GMRIEVYGCAYKSEVVYF 186
+R+E+YGC ++ ++ +
Sbjct: 177 CLRVELYGCLWRDGLLSY 194
>gi|83977450 discoidin domain receptor family, member 1 isoform a
[Homo sapiens]
Length = 913
Score = 79.0 bits (193), Expect = 3e-14
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 1 MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDSPLAS---ALPRSSFSSSSELSSSHGPG 57
M A + L +LLL+ + G +P C L +P S S+SS S S
Sbjct: 1 MGPEALSSLLLLLLVASGDADMKGHFDPAKCRYALGMQDRTIPDSDISASSSWSDSTAAR 60
Query: 58 FSRLNRRDGAGGWTPLVS---NKYQWLQIDLGERMEVTAVATQGGYGSS---DWVTSYLL 111
SRL DG G W P S + ++LQ+DL V V TQG + ++ SY L
Sbjct: 61 HSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRL 120
Query: 112 MFSDGGRNWKQYRREESIWG---FPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRI 168
+S GR W ++ WG GN + + VV L PP AR +RF P A +
Sbjct: 121 RYSRDGRRWMGWKDR---WGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMS-V 176
Query: 169 GMRIEVYGCAYKSEVVYF 186
+R+E+YGC ++ ++ +
Sbjct: 177 CLRVELYGCLWRDGLLSY 194
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 77.8 bits (190), Expect = 6e-14
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 14/227 (6%)
Query: 364 CPQPQTVPVTFLSSRSYLALPGNSGEDKVSVTFQFRTWNRAGHLLFGELQRGSGSFVLFL 423
C + PV RS+LA P + + +FR G LL+ RG L L
Sbjct: 1366 CEKVLGAPVPAFEGRSFLAFPTLRAYHTLRLALEFRALEPQGLLLYNGNARGKDFLALAL 1425
Query: 424 KDGKLKLSLFQAGQSPRNVTAGAGLNDGQWHSVSFSAKWSHMNVVVDDDTAV---QPLVA 480
DG+++L F G P +T+ + GQWH + S W + VD +T V P
Sbjct: 1426 LDGRVQLR-FDTGSGPAVLTSAVPVEPGQWHRLELSRHWRRGTLSVDGETPVLGESPSGT 1484
Query: 481 VLIDSGDTYYFGGCLGNSSGSGCKSPL--GGFQGCLRLITIGDKAVDPILVQQGALGSFR 538
++ + GG + + + G +GC+RL+ + ++ ++ + G + R
Sbjct: 1485 DGLNLDTDLFVGGVPEDQAAVALERTFVGAGLRGCIRLLDVNNQRLE---LGIGPGAATR 1541
Query: 539 DLQIDSCGITDRCLPSYCEHGGECSQSWDT--FSCDCLGTGYTGETC 583
+ CG CLP+ C HGG Q+ + F C C G G TC
Sbjct: 1542 GSGVGECG-DHPCLPNPC-HGGAPCQNLEAGRFHCQC-PPGRVGPTC 1585
Score = 43.9 bits (102), Expect = 0.001
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 15/209 (7%)
Query: 390 DKVSVTFQFRTWNRAGHLLF-GELQRGSGSFV-LFLKDGKLKLSLFQAGQSPRNVTAGAG 447
+K+++ F +G LL+ G+ G G FV L L+D +L+ + G+ + +
Sbjct: 1660 EKMALEVVFLARGPSGLLLYNGQKTDGKGDFVSLALRDRRLEFR-YDLGKGAAVIRSREP 1718
Query: 448 LNDGQWHSVSFSAKWSHMNVVVDDDTAV---QPLVAVLIDSGDTYYFGGCLGNSSGSGCK 504
+ G W VS + V D V P+ +++ + Y GG S +
Sbjct: 1719 VTLGAWTRVSLERNGRKGALRVGDGPRVLGESPVPHTVLNLKEPLYVGGAPDFSKLARAA 1778
Query: 505 SPLGGFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCG--ITDRCLPSYCEHGGEC 562
+ GF G ++L+++G + +L + L R + + S R C +G C
Sbjct: 1779 AVSSGFDGAIQLVSLGGR---QLLTPEHVL---RQVDVTSFAGHPCTRASGHPCLNGASC 1832
Query: 563 SQSWDTFSCDCLGTGYTGETCHSSLYEQS 591
+ C C G G++G C L E+S
Sbjct: 1833 VPREAAYVCLCPG-GFSGPHCEKGLVEKS 1860
Score = 37.0 bits (84), Expect = 0.11
Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 208 ISLKFKAMQSNGILLHREGQHG-NHITLELIKGKLVFFLNSGNAKLPSTIAPVTLTLGSL 266
++L+F+A++ G+LL+ G + + L L+ G++ ++G+ P LT
Sbjct: 1396 LALEFRALEPQGLLLYNGNARGKDFLALALLDGRVQLRFDTGS-------GPAVLTSAVP 1448
Query: 267 LDDQHWHSVLIELLDTQVNFTVDKHTHHF-QAKGDSSNLDLNFEISFGGI----LSPGRS 321
++ WH + + + +VD T ++ + L+L+ ++ GG+ +
Sbjct: 1449 VEPGQWHRLELSRHWRRGTLSVDGETPVLGESPSGTDGLNLDTDLFVGGVPEDQAAVALE 1508
Query: 322 RAFTRKSFHGCLENLYYN 339
R F GC+ L N
Sbjct: 1509 RTFVGAGLRGCIRLLDVN 1526
Score = 30.8 bits (68), Expect = 8.1
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 852 SFDVGNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQV 891
S+++G+ P V ++S P N N+W V A R + SLQV
Sbjct: 1931 SYNLGSQP--VVLRSTVPVNTNRWLRVVAHREQREGSLQV 1968
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 77.8 bits (190), Expect = 6e-14
Identities = 50/150 (33%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 46 SSSELSSSHGPGFSRLNRRDGA-------GGWTPLVSNKYQWLQIDLGERMEVTAVATQG 98
+SS L G RLN + GA G W + QW+++D T V TQG
Sbjct: 402 ASSMLRHGLGAQRGRLNMQTGATEDDYYDGAWCAEDDARTQWIEVDTRRTTRFTGVITQG 461
Query: 99 GYGS--SDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLR 156
S D+VT++ + FS+ + W Y F GN + D+ V L P ARF+R
Sbjct: 462 RDSSIHDDFVTTFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIR 521
Query: 157 FLPLAWNPRGRIGMRIEVYGCAYKSEVVYF 186
PL WN G + MR+EV GC+ Y+
Sbjct: 522 IYPLTWN--GSLCMRLEVLGCSVAPVYSYY 549
>gi|10518506 coagulation factor VIII isoform b precursor [Homo
sapiens]
Length = 216
Score = 77.4 bits (189), Expect = 8e-14
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 31 CDSPL---ASALPRSSFSSSS---ELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQID 84
C PL + A+ + ++SS + ++ P +RL+ + + W P V+N +WLQ+D
Sbjct: 58 CSMPLGMESKAISDAQITASSYFTNMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVD 117
Query: 85 LGERMEVTAVATQG--GYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+ M+VT V TQG +S +V +L+ S G W + + + F GN ++ + V
Sbjct: 118 FQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPV 177
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
L PP R+LR P +W +I +R+EV GC
Sbjct: 178 VNSLDPPLLTRYLRIHPQSW--VHQIALRMEVLGC 210
Score = 32.0 bits (71), Expect = 3.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 132 FPGNTNADSVVHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYKS 181
F GN ++ + H PP AR++R P ++ R +R+E+ GC S
Sbjct: 10 FFGNVDSSGIKHNIFNPPIIARYIRLHPTHYSIRST--LRMELMGCDLNS 57
>gi|4503647 coagulation factor VIII isoform a precursor [Homo sapiens]
Length = 2351
Score = 77.4 bits (189), Expect = 8e-14
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 31 CDSPL---ASALPRSSFSSSS---ELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQID 84
C PL + A+ + ++SS + ++ P +RL+ + + W P V+N +WLQ+D
Sbjct: 2193 CSMPLGMESKAISDAQITASSYFTNMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVD 2252
Query: 85 LGERMEVTAVATQG--GYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+ M+VT V TQG +S +V +L+ S G W + + + F GN ++ + V
Sbjct: 2253 FQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPV 2312
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
L PP R+LR P +W +I +R+EV GC
Sbjct: 2313 VNSLDPPLLTRYLRIHPQSW--VHQIALRMEVLGC 2345
Score = 63.2 bits (152), Expect = 1e-09
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 10/157 (6%)
Query: 31 CDSPL--ASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGER 88
C +PL AS R ++S P +RL+ W+ + W+++DL
Sbjct: 2040 CQTPLGMASGHIRDFQITASGQYGQWAPKLARLHYSGSINAWS--TKEPFSWIKVDLLAP 2097
Query: 89 MEVTAVATQGGYG--SSDWVTSYLLMFSDGGRNWKQYRREES--IWGFPGNTNADSVVHY 144
M + + TQG SS +++ +++M+S G+ W+ YR + + F GN ++ + H
Sbjct: 2098 MIIHGIKTQGARQKFSSLYISQFIIMYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHN 2157
Query: 145 RLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGCAYKS 181
PP AR++R P ++ R +R+E+ GC S
Sbjct: 2158 IFNPPIIARYIRLHPTHYSIRST--LRMELMGCDLNS 2192
>gi|41872572 neuropilin 2 isoform 3 precursor [Homo sapiens]
Length = 909
Score = 76.3 bits (186), Expect = 2e-13
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 31 CDSPL---ASALPRSSFSSSSELSSSHG-PGFSRLNRRDGAGGWTPLVSNKYQWLQIDLG 86
C+ PL + + S+SS S P SRL+ D GWTP + + ++LQ+DL
Sbjct: 277 CNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDN--GWTPNLDSNKEYLQVDLR 334
Query: 87 ERMEVTAVATQGGYGSSD----WVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVV 142
+TA+ATQG +V SY L S G +W YR ++ F N +A VV
Sbjct: 335 FLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVV 394
Query: 143 HYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
+L P RF+R P W+ I +R+E++GC
Sbjct: 395 LNKLHAPLLTRFVRIRPQTWH--SGIALRLELFGC 427
Score = 61.2 bits (147), Expect = 6e-09
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 35 LASALPRSSFSSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKY---QWLQIDLGERMEV 91
L+ + S S+SS P +RL GW P + +WLQ+DLG V
Sbjct: 441 LSGLIADSQISASSTQEYLWSPSAARLV--SSRSGWFPRIPQAQPGEEWLQVDLGTPKTV 498
Query: 92 TAVATQGGYGSSD--------WVTSYLLMFSDGGRNWK--QYRREESIWGFPGNTNADSV 141
V QG G +V + + +S G++W+ Q R + F GN + D+
Sbjct: 499 KGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDT- 557
Query: 142 VHYRLQPPFEARFLRFLPLAWNPRGRIGMRIEVYGC 177
R P A+++R P W+P G IGMR+EV GC
Sbjct: 558 PDIRRFDPIPAQYVRVYPERWSPAG-IGMRLEVLGC 592
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,941,617
Number of Sequences: 37866
Number of extensions: 2392718
Number of successful extensions: 7679
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 6693
Number of HSP's gapped (non-prelim): 795
length of query: 1207
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1093
effective length of database: 13,930,794
effective search space: 15226357842
effective search space used: 15226357842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.