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Search of human proteins with 239743634
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
(692 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 1406 0.0
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 1406 0.0
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 50 9e-06
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 50 9e-06
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-05
gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens] 48 3e-05
gi|33286446 opioid growth factor receptor [Homo sapiens] 47 5e-05
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 46 1e-04
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 46 1e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 45 2e-04
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 45 2e-04
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 45 2e-04
gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo ... 45 2e-04
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi... 45 2e-04
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi... 45 2e-04
gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo sapi... 45 2e-04
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 45 2e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 45 2e-04
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 45 2e-04
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 45 2e-04
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 45 2e-04
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 45 2e-04
gi|157785645 SPEG complex locus [Homo sapiens] 45 2e-04
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 45 3e-04
gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens] 45 3e-04
gi|194272172 double homeobox, 4 [Homo sapiens] 45 3e-04
gi|194272217 double homeobox, 4-like [Homo sapiens] 45 3e-04
gi|194272216 double homeobox, 4-like [Homo sapiens] 45 3e-04
gi|194272215 double homeobox, 4-like [Homo sapiens] 45 3e-04
gi|194272192 double homeobox, 4-like [Homo sapiens] 45 3e-04
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 1406 bits (3639), Expect = 0.0
Identities = 692/692 (100%), Positives = 692/692 (100%)
Query: 1 MDEFELLIFAKSDTASYQRPDTLTTMGLFKSRSPREEGARTNCHHTEGGAGDKGKSCLPT 60
MDEFELLIFAKSDTASYQRPDTLTTMGLFKSRSPREEGARTNCHHTEGGAGDKGKSCLPT
Sbjct: 1 MDEFELLIFAKSDTASYQRPDTLTTMGLFKSRSPREEGARTNCHHTEGGAGDKGKSCLPT 60
Query: 61 DSRFPANLLHQKCCHKKTVWTQFPDDIPITGPNFFRVTSQVCSHSLVPSLYRPYEKYLAW 120
DSRFPANLLHQKCCHKKTVWTQFPDDIPITGPNFFRVTSQVCSHSLVPSLYRPYEKYLAW
Sbjct: 61 DSRFPANLLHQKCCHKKTVWTQFPDDIPITGPNFFRVTSQVCSHSLVPSLYRPYEKYLAW 120
Query: 121 QLPALLDGVEVVGGKLGAEGVLRCHRAAAIVLRAVAGAGAHRLQVRDVRLVPGPAGPRLL 180
QLPALLDGVEVVGGKLGAEGVLRCHRAAAIVLRAVAGAGAHRLQVRDVRLVPGPAGPRLL
Sbjct: 121 QLPALLDGVEVVGGKLGAEGVLRCHRAAAIVLRAVAGAGAHRLQVRDVRLVPGPAGPRLL 180
Query: 181 RDVNDHAVAVSGEGCPLFSIPPLILTVHGQEPEDDQVEEGPDDRQPHQDIHKAKGHVERL 240
RDVNDHAVAVSGEGCPLFSIPPLILTVHGQEPEDDQVEEGPDDRQPHQDIHKAKGHVERL
Sbjct: 181 RDVNDHAVAVSGEGCPLFSIPPLILTVHGQEPEDDQVEEGPDDRQPHQDIHKAKGHVERL 240
Query: 241 LLQGTLGLQGHVVPEPNGSQRDEAVVVGVEEAPLLTLGEGGRPDAQRPHAGEEAHSHHVL 300
LLQGTLGLQGHVVPEPNGSQRDEAVVVGVEEAPLLTLGEGGRPDAQRPHAGEEAHSHHVL
Sbjct: 241 LLQGTLGLQGHVVPEPNGSQRDEAVVVGVEEAPLLTLGEGGRPDAQRPHAGEEAHSHHVL 300
Query: 301 HRHVSVAHATALLNALQQVAHEGVHALAQALEHDQCQRDAQHGVEHAEGLARIGARCSVP 360
HRHVSVAHATALLNALQQVAHEGVHALAQALEHDQCQRDAQHGVEHAEGLARIGARCSVP
Sbjct: 301 HRHVSVAHATALLNALQQVAHEGVHALAQALEHDQCQRDAQHGVEHAEGLARIGARCSVP 360
Query: 361 ITSLTYGGDDRDRKVEGAGEFPLDAGAVRFRLQDHQLQLPVVLAADVVLPLDPDLLGFEF 420
ITSLTYGGDDRDRKVEGAGEFPLDAGAVRFRLQDHQLQLPVVLAADVVLPLDPDLLGFEF
Sbjct: 361 ITSLTYGGDDRDRKVEGAGEFPLDAGAVRFRLQDHQLQLPVVLAADVVLPLDPDLLGFEF 420
Query: 421 LLLAHLVVRLEGVEHGGAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVP 480
LLLAHLVVRLEGVEHGGAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVP
Sbjct: 421 LLLAHLVVRLEGVEHGGAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVP 480
Query: 481 LQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQP 540
LQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQP
Sbjct: 481 LQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQP 540
Query: 541 APLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAV 600
APLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAV
Sbjct: 541 APLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAV 600
Query: 601 PSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQS 660
PSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQS
Sbjct: 601 PSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQS 660
Query: 661 PAPQERKQPWRVESLRDSGLEEENGIQPEMAG 692
PAPQERKQPWRVESLRDSGLEEENGIQPEMAG
Sbjct: 661 PAPQERKQPWRVESLRDSGLEEENGIQPEMAG 692
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 1406 bits (3639), Expect = 0.0
Identities = 692/692 (100%), Positives = 692/692 (100%)
Query: 1 MDEFELLIFAKSDTASYQRPDTLTTMGLFKSRSPREEGARTNCHHTEGGAGDKGKSCLPT 60
MDEFELLIFAKSDTASYQRPDTLTTMGLFKSRSPREEGARTNCHHTEGGAGDKGKSCLPT
Sbjct: 1 MDEFELLIFAKSDTASYQRPDTLTTMGLFKSRSPREEGARTNCHHTEGGAGDKGKSCLPT 60
Query: 61 DSRFPANLLHQKCCHKKTVWTQFPDDIPITGPNFFRVTSQVCSHSLVPSLYRPYEKYLAW 120
DSRFPANLLHQKCCHKKTVWTQFPDDIPITGPNFFRVTSQVCSHSLVPSLYRPYEKYLAW
Sbjct: 61 DSRFPANLLHQKCCHKKTVWTQFPDDIPITGPNFFRVTSQVCSHSLVPSLYRPYEKYLAW 120
Query: 121 QLPALLDGVEVVGGKLGAEGVLRCHRAAAIVLRAVAGAGAHRLQVRDVRLVPGPAGPRLL 180
QLPALLDGVEVVGGKLGAEGVLRCHRAAAIVLRAVAGAGAHRLQVRDVRLVPGPAGPRLL
Sbjct: 121 QLPALLDGVEVVGGKLGAEGVLRCHRAAAIVLRAVAGAGAHRLQVRDVRLVPGPAGPRLL 180
Query: 181 RDVNDHAVAVSGEGCPLFSIPPLILTVHGQEPEDDQVEEGPDDRQPHQDIHKAKGHVERL 240
RDVNDHAVAVSGEGCPLFSIPPLILTVHGQEPEDDQVEEGPDDRQPHQDIHKAKGHVERL
Sbjct: 181 RDVNDHAVAVSGEGCPLFSIPPLILTVHGQEPEDDQVEEGPDDRQPHQDIHKAKGHVERL 240
Query: 241 LLQGTLGLQGHVVPEPNGSQRDEAVVVGVEEAPLLTLGEGGRPDAQRPHAGEEAHSHHVL 300
LLQGTLGLQGHVVPEPNGSQRDEAVVVGVEEAPLLTLGEGGRPDAQRPHAGEEAHSHHVL
Sbjct: 241 LLQGTLGLQGHVVPEPNGSQRDEAVVVGVEEAPLLTLGEGGRPDAQRPHAGEEAHSHHVL 300
Query: 301 HRHVSVAHATALLNALQQVAHEGVHALAQALEHDQCQRDAQHGVEHAEGLARIGARCSVP 360
HRHVSVAHATALLNALQQVAHEGVHALAQALEHDQCQRDAQHGVEHAEGLARIGARCSVP
Sbjct: 301 HRHVSVAHATALLNALQQVAHEGVHALAQALEHDQCQRDAQHGVEHAEGLARIGARCSVP 360
Query: 361 ITSLTYGGDDRDRKVEGAGEFPLDAGAVRFRLQDHQLQLPVVLAADVVLPLDPDLLGFEF 420
ITSLTYGGDDRDRKVEGAGEFPLDAGAVRFRLQDHQLQLPVVLAADVVLPLDPDLLGFEF
Sbjct: 361 ITSLTYGGDDRDRKVEGAGEFPLDAGAVRFRLQDHQLQLPVVLAADVVLPLDPDLLGFEF 420
Query: 421 LLLAHLVVRLEGVEHGGAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVP 480
LLLAHLVVRLEGVEHGGAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVP
Sbjct: 421 LLLAHLVVRLEGVEHGGAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVP 480
Query: 481 LQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQP 540
LQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQP
Sbjct: 481 LQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQP 540
Query: 541 APLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAV 600
APLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAV
Sbjct: 541 APLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAV 600
Query: 601 PSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQS 660
PSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQS
Sbjct: 601 PSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQS 660
Query: 661 PAPQERKQPWRVESLRDSGLEEENGIQPEMAG 692
PAPQERKQPWRVESLRDSGLEEENGIQPEMAG
Sbjct: 661 PAPQERKQPWRVESLRDSGLEEENGIQPEMAG 692
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 49.7 bits (117), Expect = 9e-06
Identities = 62/216 (28%), Positives = 81/216 (37%), Gaps = 30/216 (13%)
Query: 479 VPLQRPAAAA------ASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASG---NP 529
VPL PA+A ASS + +A+S G G A A R R RG+ G +P
Sbjct: 593 VPLTTPASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPARARGEIGGLSLSP 652
Query: 530 DTLRQTRPKQPAPLRRAMQGGPAGYRAGLAALRTP-PPAPAGNAGTGTGARKRPEGGRGA 588
R+ +P P P + G + AA R P PP P A RKR + A
Sbjct: 653 SPERR-KPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSA 711
Query: 589 RYPCGSSSRVAVPSKEPAG-------------PRAQRNLLPLLPLLAPSRWWG-GKVCEV 634
S R P+ P G PRA+ P PL A R K E
Sbjct: 712 HTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAP-RPLGAHGRRRSPAKRAEA 770
Query: 635 AVSLESPASGE----GAEQVQREGQPAPQSPAPQER 666
A L + G+ G +V Q + PAP ++
Sbjct: 771 ASMLAADVRGKTRSLGRAEVALGAQGPREKPAPPQK 806
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 49.7 bits (117), Expect = 9e-06
Identities = 62/216 (28%), Positives = 81/216 (37%), Gaps = 30/216 (13%)
Query: 479 VPLQRPAAAA------ASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASG---NP 529
VPL PA+A ASS + +A+S G G A A R R RG+ G +P
Sbjct: 588 VPLTTPASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPARARGEIGGLSLSP 647
Query: 530 DTLRQTRPKQPAPLRRAMQGGPAGYRAGLAALRTP-PPAPAGNAGTGTGARKRPEGGRGA 588
R+ +P P P + G + AA R P PP P A RKR + A
Sbjct: 648 SPERR-KPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSA 706
Query: 589 RYPCGSSSRVAVPSKEPAG-------------PRAQRNLLPLLPLLAPSRWWG-GKVCEV 634
S R P+ P G PRA+ P PL A R K E
Sbjct: 707 HTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAP-RPLGAHGRRRSPAKRAEA 765
Query: 635 AVSLESPASGE----GAEQVQREGQPAPQSPAPQER 666
A L + G+ G +V Q + PAP ++
Sbjct: 766 ASMLAADVRGKTRSLGRAEVALGAQGPREKPAPPQK 801
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 48.9 bits (115), Expect = 2e-05
Identities = 52/156 (33%), Positives = 63/156 (40%), Gaps = 27/156 (17%)
Query: 460 GRQQGAGAGGMSRRLTAARVPLQRPAAAAA---SSSAAAAAASKLGGAGPGSAEKADRHR 516
G Q+ GAGG PL PA +AA + A+ AA + G AGP R R
Sbjct: 64 GSQEHPGAGG----------PLCFPARSAAWGPPARASRAAGRRAGPAGP-PCRAPGRGR 112
Query: 517 RLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAGYRAG---LAALRTPPPAPAGNAG 573
RR A G T PA + RA G A AG + A R PPP + G
Sbjct: 113 AAATRRSPAPG-------TARGSPAGVERA-GGATAASSAGTRSVPARRLPPPCGGTSLG 164
Query: 574 TGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPR 609
G+ A +RP R P S A+P P PR
Sbjct: 165 AGSRALRRPGSAALPRSPSSSRRWAAMPG--PGAPR 198
Score = 30.4 bits (67), Expect = 5.7
Identities = 37/132 (28%), Positives = 47/132 (35%), Gaps = 29/132 (21%)
Query: 542 PLRRAMQGGPA------GYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSS 595
P R A G PA G RAG A PP A G R+ P G P G
Sbjct: 78 PARSAAWGPPARASRAAGRRAGPAG----PPCRAPGRGRAAATRRSPAPGTARGSPAGVE 133
Query: 596 SRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQ 655
+ AG R+ +P L P GG + G G+ ++R G
Sbjct: 134 RAGGATAASSAGTRS----VPARRLPPPC---GG-----------TSLGAGSRALRRPGS 175
Query: 656 PA-PQSPAPQER 666
A P+SP+ R
Sbjct: 176 AALPRSPSSSRR 187
>gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 483
Score = 47.8 bits (112), Expect = 3e-05
Identities = 49/150 (32%), Positives = 56/150 (37%), Gaps = 28/150 (18%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASGE--- 645
PC VA P AGP+ Q L P P S WWG G+ +VA + P +GE
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGEAPP 393
Query: 646 --------GAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASARQGQMQGIPAPSQALQEPAP 423
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 47.4 bits (111), Expect = 5e-05
Identities = 51/187 (27%), Positives = 61/187 (32%), Gaps = 29/187 (15%)
Query: 487 AAASSSAAAAAASKLGGAGPGSAEKADRHRRLLE-----RRGQASGNPDTLRQTRPKQPA 541
+AA +S A + G P KA +E R G G P + +T PA
Sbjct: 468 SAAVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPA 527
Query: 542 PLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCG---SSSRV 598
GPAG + TP P PAG AG G P G + S
Sbjct: 528 --------GPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPS 579
Query: 599 AVPSKEPAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAP 658
P PAGP P +PS G + PA E AE P P
Sbjct: 580 ETPGPSPAGPTRDE------PAESPSETPGPRPA-------GPAGDEPAESPSETPGPRP 626
Query: 659 QSPAPQE 665
PA E
Sbjct: 627 AGPAGDE 633
Score = 34.3 bits (77), Expect = 0.40
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 11/130 (8%)
Query: 443 GEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAAAASKLG 502
G D+ +SP P + AG G + + P RPA A A + S+
Sbjct: 528 GPAGDEPAESPSETP---GPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESP--SETP 582
Query: 503 GAGPGSAEKADRHRRLLERRGQASGNP--DTLRQTRPKQPAPLRRAMQGGPAGYRAGLAA 560
G P + + E G P D ++ + P P GPAG +
Sbjct: 583 GPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGP----RPAGPAGDEPAESP 638
Query: 561 LRTPPPAPAG 570
TP P+PAG
Sbjct: 639 SETPGPSPAG 648
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 46.2 bits (108), Expect = 1e-04
Identities = 67/225 (29%), Positives = 80/225 (35%), Gaps = 57/225 (25%)
Query: 462 QQGAGAGGMSRRLTA-ARVPLQRPAAAAASSSAAAA--------AASKLGG------AGP 506
Q GA G +T R L R A A AAA A +KLGG GP
Sbjct: 359 QAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGP 418
Query: 507 GSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAGYRAGLAALRTPPP 566
G + R R NP A + AG RAG A RT
Sbjct: 419 GPWDDPARRR-----------NPGA--------------AARAKLAGQRAGRARARTGSQ 453
Query: 567 APAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRW 626
+ G G GA + P GGR G+ R E A PR R LLP LP + P+R
Sbjct: 454 VGSRGRGWGPGAGRVPSGGRRG---VGNPERW---GGEAAAPRPSRVLLPELPAVDPAR- 506
Query: 627 WGGKVCEVAVSLESPASGEGAEQVQR--EGQPAPQSPAPQERKQP 669
E A+ + E R +G AP S P R +P
Sbjct: 507 --------DTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRP 543
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 46.2 bits (108), Expect = 1e-04
Identities = 67/225 (29%), Positives = 80/225 (35%), Gaps = 57/225 (25%)
Query: 462 QQGAGAGGMSRRLTA-ARVPLQRPAAAAASSSAAAA--------AASKLGG------AGP 506
Q GA G +T R L R A A AAA A +KLGG GP
Sbjct: 359 QAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGP 418
Query: 507 GSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAGYRAGLAALRTPPP 566
G + R R NP A + AG RAG A RT
Sbjct: 419 GPWDDPARRR-----------NPGA--------------AARAKLAGQRAGRARARTGSQ 453
Query: 567 APAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRW 626
+ G G GA + P GGR G+ R E A PR R LLP LP + P+R
Sbjct: 454 VGSRGRGWGPGAGRVPSGGRRG---VGNPERW---GGEAAAPRPSRVLLPELPAVDPAR- 506
Query: 627 WGGKVCEVAVSLESPASGEGAEQVQR--EGQPAPQSPAPQERKQP 669
E A+ + E R +G AP S P R +P
Sbjct: 507 --------DTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRP 543
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.4 bits (106), Expect = 2e-04
Identities = 44/134 (32%), Positives = 53/134 (39%), Gaps = 21/134 (15%)
Query: 476 AARVPLQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQT 535
A R P R AAA A + + S G AG G A A+ G P+
Sbjct: 44 APRTPEVRAAAAGALGNHVVSG-SPAGAAGAGPAAPAE---------GAPGAAPE----- 88
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSS 595
P P RA GG R G + R P PAG A R PEG G+ P ++
Sbjct: 89 ----PPPAGRARPGGGGPQRPGPPSPRRPL-VPAGPAPPAAKLRPPPEGSAGSCAPVPAA 143
Query: 596 SRVAV-PSKEPAGP 608
+ VA P PAGP
Sbjct: 144 AAVAAGPEPAPAGP 157
Score = 38.1 bits (87), Expect = 0.028
Identities = 64/241 (26%), Positives = 85/241 (35%), Gaps = 44/241 (18%)
Query: 454 HVLPLHGRQQGAGAGGMSRRLTA---ARVPLQRPAAAAASSSAAA-----AAASKLGGAG 505
H+ P + A AG + + + A PAA A + AA A ++ GG G
Sbjct: 42 HLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGG 101
Query: 506 P---------------GSAEKADRHRRLLE-RRGQASGNPDTLRQTRPKQPAPLRRAMQG 549
P G A A + R E G + P +PAP A
Sbjct: 102 PQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPA 161
Query: 550 GPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRV-AVPSKEPAGP 608
GP A LAA P P P G G G K P G A+ GS++ + + + PA
Sbjct: 162 GP----AALAARAGPGPGPGPGPGPGPGPGK-PAGPGAAQTLNGSAALLNSHHAAAPAVS 216
Query: 609 RAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQSPAPQERKQ 668
LLPL P+ G V + P G A PAP +P+P
Sbjct: 217 LVNNGPAALLPLPKPAA--PGTVIQT-----PPFVGAAA-------PPAPAAPSPPAAPA 262
Query: 669 P 669
P
Sbjct: 263 P 263
Score = 37.4 bits (85), Expect = 0.047
Identities = 51/186 (27%), Positives = 66/186 (35%), Gaps = 41/186 (22%)
Query: 443 GEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAAAASKLG 502
G A +P V P Q G AG AA A + AA A G
Sbjct: 285 GHPAGPPTAAPAVPPPAAAQNGGSAG-----------------AAPAPAPAAGGPAGVSG 327
Query: 503 GAGPGSAE-------KADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAGYR 555
GPG+A KA+ +R+++ P + PA +M GP
Sbjct: 328 QPGPGAAAAAPAPGVKAESPKRVVQAA------PPAAQTLAASGPASTAASMVIGPTMQG 381
Query: 556 AGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPRAQRNLL 615
A + PPPAP GT TG P+G GA + S P+ +G RA
Sbjct: 382 ALPSPAAVPPPAP----GTPTGL---PKGAAGA----VTQSLSRTPTATTSGIRATLTPT 430
Query: 616 PLLPLL 621
L P L
Sbjct: 431 VLAPRL 436
Score = 30.8 bits (68), Expect = 4.4
Identities = 39/131 (29%), Positives = 44/131 (33%), Gaps = 19/131 (14%)
Query: 484 PAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPL 543
PA AA S AA A A+ P A L G +G P P P P
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPAT----LARPPGHPAGPPTAA----PAVPPPA 301
Query: 544 RRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSK 603
A GG AG P PAPA AG G +P G A P +
Sbjct: 302 A-AQNGGSAG--------AAPAPAPA--AGGPAGVSGQPGPGAAAAAPAPGVKAESPKRV 350
Query: 604 EPAGPRAQRNL 614
A P A + L
Sbjct: 351 VQAAPPAAQTL 361
Score = 30.4 bits (67), Expect = 5.7
Identities = 53/185 (28%), Positives = 65/185 (35%), Gaps = 31/185 (16%)
Query: 485 AAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRP--KQPAP 542
+AA +S AAA A L GP + LL A+ P T+ QT P AP
Sbjct: 201 SAALLNSHHAAAPAVSLVNNGPAA---------LLPLPKPAA--PGTVIQTPPFVGAAAP 249
Query: 543 LRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPS 602
A PA A PPP PA RP G +P G + A P+
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPA------PATLARPPG-----HPAGPPT--AAPA 296
Query: 603 KEPAGPRAQRNLLPLLPLLAPSRWWGGKVC---EVAVSLESPASGEGAEQVQREGQPAPQ 659
P P AP+ V + +PA G AE +R Q AP
Sbjct: 297 VPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAP- 355
Query: 660 SPAPQ 664
PA Q
Sbjct: 356 -PAAQ 359
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 45.1 bits (105), Expect = 2e-04
Identities = 48/150 (32%), Positives = 55/150 (36%), Gaps = 28/150 (18%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 -------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASARQGQMQGIPAPSQALQEPAP 423
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 45.1 bits (105), Expect = 2e-04
Identities = 48/150 (32%), Positives = 55/150 (36%), Gaps = 28/150 (18%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 -------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASARQGQMQGIPAPSQALQEPAP 423
>gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo
sapiens]
Length = 483
Score = 45.1 bits (105), Expect = 2e-04
Identities = 48/150 (32%), Positives = 55/150 (36%), Gaps = 28/150 (18%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 -------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASARQGQMQGIPAPSQALQEPAP 423
>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 45.1 bits (105), Expect = 2e-04
Identities = 48/150 (32%), Positives = 55/150 (36%), Gaps = 28/150 (18%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 -------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASARQGQMQGIPAPSQALQEPAP 423
>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 45.1 bits (105), Expect = 2e-04
Identities = 48/150 (32%), Positives = 55/150 (36%), Gaps = 28/150 (18%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 -------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASARQGQMQGIPAPSQALQEPAP 423
>gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 45.1 bits (105), Expect = 2e-04
Identities = 48/150 (32%), Positives = 55/150 (36%), Gaps = 28/150 (18%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 -------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASARQGQMQGIPAPSQALQEPAP 423
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 45.1 bits (105), Expect = 2e-04
Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 14/231 (6%)
Query: 437 GAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAA 496
G ++ + + +E S P + G + A P + A A + AA
Sbjct: 327 GKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAA 386
Query: 497 AASKLGGA---GPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAG 553
A ++G S+E++D R L A P L ++ +PA M GP G
Sbjct: 387 AQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVKP--LGKSPQVKPAS---TMGMGPLG 441
Query: 554 YRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSK-EPAGPRAQR 612
AG PP G A K E + SS VP+ PA ++
Sbjct: 442 KGAGPV-----PPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLG 496
Query: 613 NLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQSPAP 663
N+L P +P++ K VAV +++ + +E + A AP
Sbjct: 497 NILQAKPTSSPAKGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAP 547
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 45.1 bits (105), Expect = 2e-04
Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 14/231 (6%)
Query: 437 GAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAA 496
G ++ + + +E S P + G + A P + A A + AA
Sbjct: 404 GKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAA 463
Query: 497 AASKLGGA---GPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAG 553
A ++G S+E++D R L A P L ++ +PA M GP G
Sbjct: 464 AQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVKP--LGKSPQVKPAS---TMGMGPLG 518
Query: 554 YRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSK-EPAGPRAQR 612
AG PP G A K E + SS VP+ PA ++
Sbjct: 519 KGAGPV-----PPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLG 573
Query: 613 NLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQSPAP 663
N+L P +P++ K VAV +++ + +E + A AP
Sbjct: 574 NILQAKPTSSPAKGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAP 624
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 45.1 bits (105), Expect = 2e-04
Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 14/231 (6%)
Query: 437 GAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAA 496
G ++ + + +E S P + G + A P + A A + AA
Sbjct: 404 GKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAA 463
Query: 497 AASKLGGA---GPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAG 553
A ++G S+E++D R L A P L ++ +PA M GP G
Sbjct: 464 AQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVKP--LGKSPQVKPAS---TMGMGPLG 518
Query: 554 YRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSK-EPAGPRAQR 612
AG PP G A K E + SS VP+ PA ++
Sbjct: 519 KGAGPV-----PPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLG 573
Query: 613 NLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQSPAP 663
N+L P +P++ K VAV +++ + +E + A AP
Sbjct: 574 NILQAKPTSSPAKGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAP 624
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 45.1 bits (105), Expect = 2e-04
Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 14/231 (6%)
Query: 437 GAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAA 496
G ++ + + +E S P + G + A P + A A + AA
Sbjct: 327 GKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAA 386
Query: 497 AASKLGGA---GPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAG 553
A ++G S+E++D R L A P L ++ +PA M GP G
Sbjct: 387 AQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVKP--LGKSPQVKPAS---TMGMGPLG 441
Query: 554 YRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSK-EPAGPRAQR 612
AG PP G A K E + SS VP+ PA ++
Sbjct: 442 KGAGPV-----PPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLG 496
Query: 613 NLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQSPAP 663
N+L P +P++ K VAV +++ + +E + A AP
Sbjct: 497 NILQAKPTSSPAKGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAP 547
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 45.1 bits (105), Expect = 2e-04
Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 14/231 (6%)
Query: 437 GAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAA 496
G ++ + + +E S P + G + A P + A A + AA
Sbjct: 404 GKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAA 463
Query: 497 AASKLGGA---GPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAG 553
A ++G S+E++D R L A P L ++ +PA M GP G
Sbjct: 464 AQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVKP--LGKSPQVKPAS---TMGMGPLG 518
Query: 554 YRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSK-EPAGPRAQR 612
AG PP G A K E + SS VP+ PA ++
Sbjct: 519 KGAGPV-----PPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLG 573
Query: 613 NLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQSPAP 663
N+L P +P++ K VAV +++ + +E + A AP
Sbjct: 574 NILQAKPTSSPAKGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAP 624
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 45.1 bits (105), Expect = 2e-04
Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 14/231 (6%)
Query: 437 GAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAA 496
G ++ + + +E S P + G + A P + A A + AA
Sbjct: 404 GKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAA 463
Query: 497 AASKLGGA---GPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAG 553
A ++G S+E++D R L A P L ++ +PA M GP G
Sbjct: 464 AQVQVGKQEEDSRSSSEESDSDREALAAMNAAQVKP--LGKSPQVKPAS---TMGMGPLG 518
Query: 554 YRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSK-EPAGPRAQR 612
AG PP G A K E + SS VP+ PA ++
Sbjct: 519 KGAGPV-----PPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEVPTAVAPAQEKSLG 573
Query: 613 NLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQSPAP 663
N+L P +P++ K VAV +++ + +E + A AP
Sbjct: 574 NILQAKPTSSPAKGPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAP 624
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 45.1 bits (105), Expect = 2e-04
Identities = 64/240 (26%), Positives = 81/240 (33%), Gaps = 35/240 (14%)
Query: 447 DDEGQSPHVLPLHGRQQGAGAG---GMSRRLTAARVPLQRPAAAAASSSAAAAAASKL-- 501
D E SP LP G++ AGA G RR ++A L R AA+ +L
Sbjct: 1983 DQEAPSPEALPSPGQEPAAGASPRRGELRRGSSAESALPRAGPRELGRGLHKAASVELPQ 2042
Query: 502 -------------GGAGPGS-AEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAM 547
GG G G A++ R+ L R G G LR PL ++
Sbjct: 2043 RRSPSPGATRLARGGLGEGEYAQRLQALRQRLLRGGPEDGKVSGLR-------GPLLESL 2095
Query: 548 QGGPAGYRAGLAALRTPPP---APAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKE 604
G R AA P P N G +K +G P G R P +
Sbjct: 2096 GGRARDPRMARAASSEAAPHHQPPLEN----RGLQKSSSFSQGEAEPRGRHRRAGAPLEI 2151
Query: 605 PAGPRAQRNLLPLLPLLAPSRWWGGKVCEVAVSLESPASGEGAEQVQREGQPAPQSPAPQ 664
P R L L A S S P++ + AE APQ PAPQ
Sbjct: 2152 PVARLGARRLQESPSLSALSE--AQPSSPARPSAPKPSTPKSAEPSATTPSDAPQPPAPQ 2209
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 44.7 bits (104), Expect = 3e-04
Identities = 47/141 (33%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 487 AAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRA 546
A +SSA AAAA L AG G E+AD RR L R S D L P+QP L +
Sbjct: 30 ALKASSAPAAAAGLLREAGSGGRERADWRRRQL--RKVRSVELDQL----PEQPLFLAAS 83
Query: 547 MQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARK---RPEGGRGARYPCGSSSRVAVPSK 603
A+ +P P PA AG+GTG + P G +R + VA P
Sbjct: 84 PP----------ASSTSPSPEPADAAGSGTGFQPVAVPPPHGAASRGGAHLTESVAAPDS 133
Query: 604 EPAGPRAQRNLLPLLPLLAPS 624
+ P A P PS
Sbjct: 134 GASSPAAAEPGEKRAPAAEPS 154
>gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 44.7 bits (104), Expect = 3e-04
Identities = 48/152 (31%), Positives = 55/152 (36%), Gaps = 30/152 (19%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 ---------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASASARQGQMQGIPAPSQALQEPAP 425
>gi|194272172 double homeobox, 4 [Homo sapiens]
Length = 485
Score = 44.7 bits (104), Expect = 3e-04
Identities = 48/152 (31%), Positives = 55/152 (36%), Gaps = 30/152 (19%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 ---------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASASARQGQMQGIPAPSQALQEPAP 425
>gi|194272217 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 44.7 bits (104), Expect = 3e-04
Identities = 48/152 (31%), Positives = 55/152 (36%), Gaps = 30/152 (19%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 ---------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASASARQGQMQGIPAPSQALQEPAP 425
>gi|194272216 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 44.7 bits (104), Expect = 3e-04
Identities = 48/152 (31%), Positives = 55/152 (36%), Gaps = 30/152 (19%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 ---------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASASARQGQMQGIPAPSQALQEPAP 425
>gi|194272215 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 44.7 bits (104), Expect = 3e-04
Identities = 48/152 (31%), Positives = 55/152 (36%), Gaps = 30/152 (19%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 ---------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASASARQGQMQGIPAPSQALQEPAP 425
>gi|194272192 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 44.7 bits (104), Expect = 3e-04
Identities = 48/152 (31%), Positives = 55/152 (36%), Gaps = 30/152 (19%)
Query: 536 RPKQPAPLRRAMQGGPAGYRAGLAALRTP------PPAPAGNAGTGTGARKRPEGGRGAR 589
+P Q AP Q PA AA P P AP G R G
Sbjct: 280 QPSQAAPAEGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQRDGLP 339
Query: 590 YPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWG-GKVCEVAVSLESPASG---- 644
PC VA P AGP+ Q L P P S WWG G+ +VA + P +G
Sbjct: 340 GPCA----VAQPGPAQAGPQGQGVLAP--PTSQGSPWWGWGRGPQVAGAAWEPQAGAAPP 393
Query: 645 ---------EGAEQVQREGQPAP----QSPAP 663
A Q Q +G PAP Q PAP
Sbjct: 394 PQPAPPDASASARQGQMQGIPAPSQALQEPAP 425
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,429,557
Number of Sequences: 37866
Number of extensions: 1923952
Number of successful extensions: 12540
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 691
Number of HSP's that attempted gapping in prelim test: 10622
Number of HSP's gapped (non-prelim): 2174
length of query: 692
length of database: 18,247,518
effective HSP length: 109
effective length of query: 583
effective length of database: 14,120,124
effective search space: 8232032292
effective search space used: 8232032292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.