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Search of human proteins with 239743263
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743263 PREDICTED: hypothetical protein XP_002342813 [Homo
sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754641 PREDICTED: hypothetical protein [Homo sapiens] 503 e-143
gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo ... 503 e-143
gi|239743263 PREDICTED: hypothetical protein XP_002342813 [Homo ... 503 e-143
gi|239508944 PREDICTED: hypothetical protein [Homo sapiens] 503 e-143
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 45 4e-05
gi|169179422 PREDICTED: hypothetical protein [Homo sapiens] 45 4e-05
gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens] 45 7e-05
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 44 2e-04
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 44 2e-04
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 44 2e-04
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 43 3e-04
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 43 3e-04
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 43 3e-04
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 40 0.001
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 40 0.002
gi|48762934 alpha 2 type I collagen [Homo sapiens] 39 0.003
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 39 0.003
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 39 0.004
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 39 0.004
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 39 0.004
gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo ... 38 0.006
gi|194272140 dendrin [Homo sapiens] 38 0.006
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 38 0.008
gi|57242766 hypothetical protein LOC168455 [Homo sapiens] 38 0.008
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 38 0.008
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|40556370 PHD finger protein 15 [Homo sapiens] 37 0.011
>gi|239754641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 503 bits (1294), Expect = e-143
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP 60
MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP
Sbjct: 1 MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP 60
Query: 61 RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA
Sbjct: 61 RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
Query: 121 AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS 180
AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS
Sbjct: 121 AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS 180
Query: 181 GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA 229
GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA
Sbjct: 181 GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA 229
>gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo
sapiens]
Length = 229
Score = 503 bits (1294), Expect = e-143
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP 60
MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP
Sbjct: 1 MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP 60
Query: 61 RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA
Sbjct: 61 RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
Query: 121 AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS 180
AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS
Sbjct: 121 AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS 180
Query: 181 GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA 229
GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA
Sbjct: 181 GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA 229
>gi|239743263 PREDICTED: hypothetical protein XP_002342813 [Homo
sapiens]
Length = 229
Score = 503 bits (1294), Expect = e-143
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP 60
MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP
Sbjct: 1 MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP 60
Query: 61 RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA
Sbjct: 61 RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
Query: 121 AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS 180
AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS
Sbjct: 121 AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS 180
Query: 181 GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA 229
GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA
Sbjct: 181 GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA 229
>gi|239508944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 503 bits (1294), Expect = e-143
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP 60
MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP
Sbjct: 1 MSSPFSFGGDFLFSSRSRFVFSVSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSP 60
Query: 61 RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA
Sbjct: 61 RRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
Query: 121 AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS 180
AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS
Sbjct: 121 AWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGS 180
Query: 181 GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA 229
GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA
Sbjct: 181 GFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSPTA 229
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 45.4 bits (106), Expect = 4e-05
Identities = 53/176 (30%), Positives = 59/176 (33%), Gaps = 24/176 (13%)
Query: 59 SPRRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASG 118
+PRR RR Q Q P + RP P G PP + R
Sbjct: 2278 TPRRGRR----QLPQTPSTPRPHVSYSPVIRKAGGSGPPQQQQQQQQQQQQQAVAR---- 2329
Query: 119 PAAWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEA 178
P RAA +G T RP T G SG S E V GP R P
Sbjct: 2330 -----PGRAATSGPRRYPGPTAEPLAGDRPPT-GGHSSGRSPRMERRVPGPARSESPRAC 2383
Query: 179 GSGFRRLRRRRP----GFPGPRHWEAGLGK------GSGRGGGDAETSGGELAPGP 224
G R P G PGPRH G G G GGG+ +G AP P
Sbjct: 2384 RHGGARWPASGPHVSEGPPGPRHHGYYRGSDYDEADGPGSGGGEEAMAGAYDAPPP 2439
>gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 645
Score = 45.4 bits (106), Expect = 4e-05
Identities = 62/209 (29%), Positives = 77/209 (36%), Gaps = 29/209 (13%)
Query: 30 PVNFLLTLSPACRPRPRCSAEGWRRCWRRSPRRS----RRRRCPQSLQPPPSLRPRCPRR 85
P +FLL L PA + G R P R R CP L PP L P
Sbjct: 326 PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPG- 384
Query: 86 PG---QCNDGRGSP--PALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRT- 139
PG +GR SP P LP S S W S AA PA +P+G W T
Sbjct: 385 PGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSG-----WGTW 439
Query: 140 VARPPPGRPATPGDRKSGESVG----------TELPVKGPGRWRCPVEAGSGFRRLRRRR 189
++ PPP +P + S+G + L G G C +A R R
Sbjct: 440 LSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQG---CSGQALLRCGSNRTLR 496
Query: 190 PGFPGPRHWEAGLGKGSGRGGGDAETSGG 218
G G + LG +G G G + GG
Sbjct: 497 GGGTGQKWPGVPLGARTGLGAGVRQHPGG 525
>gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens]
Length = 485
Score = 44.7 bits (104), Expect = 7e-05
Identities = 43/128 (33%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 26 PSRPPVNFLLTLSPA-----CRPRPRCSAEGWRRCWRRSPRRSRRRRCPQSLQPPPSLRP 80
P R P+ L P CR R R + +C R PR RR P + P R
Sbjct: 369 PWRSPLLLLAMWGPQAPPCLCRKRGRGACI---KCERLRPRIRRRGLGPPAAAPA---RR 422
Query: 81 RCPRRPGQCNDGRGSPPALPSSTWR---TTWSCIRCRWASGPAAWWPARAAPAGAETREW 137
R PR P C +P ALP+ T R + W+ + R + A WP R AGA++ W
Sbjct: 423 RIPRTPALC-----TPLALPAPTTRRRQSPWTRFQWRRRAWAAPLWPPRG--AGADSPRW 475
Query: 138 R-TVARPP 144
R RPP
Sbjct: 476 RGRRVRPP 483
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 43.5 bits (101), Expect = 2e-04
Identities = 64/222 (28%), Positives = 84/222 (37%), Gaps = 38/222 (17%)
Query: 20 VFSVSEPSRPPVNFLLTLSPACR-PRPRCSAEGW-RRCWRRSPRRSRRRRCPQSLQPP-- 75
++S++EP +P SP R P R S GW R R + +R P++ QP
Sbjct: 12 IYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGHTAPRTQQPKPS 71
Query: 76 -PSLRPRCPRRPGQCNDGR---GSPPALPSST------WRTTWSCIRCRWASGPAAWWPA 125
PS PR P PG G PP L ++T + R RW P P
Sbjct: 72 GPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPP----PG 127
Query: 126 RAAPAGAETREWRTVARPPPGRPATPGDR---KSGESVGTELPVKGPGRWRCPVEAGSGF 182
A G+ R R PP AT +S S GT P + P +
Sbjct: 128 AATATGSRHR------REPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVP------Y 175
Query: 183 RRLRRRRPGFP-GPRHWEAGL-GKGSGRGGGDAETSGGELAP 222
R R P P GP+ + +GS RG AE G+L P
Sbjct: 176 TREGPREPTPPAGPQGFAGSFCAEGSRRG---AEVGWGKLEP 214
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 43.5 bits (101), Expect = 2e-04
Identities = 64/222 (28%), Positives = 84/222 (37%), Gaps = 38/222 (17%)
Query: 20 VFSVSEPSRPPVNFLLTLSPACR-PRPRCSAEGW-RRCWRRSPRRSRRRRCPQSLQPP-- 75
++S++EP +P SP R P R S GW R R + +R P++ QP
Sbjct: 12 IYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGHTAPRTQQPKPS 71
Query: 76 -PSLRPRCPRRPGQCNDGR---GSPPALPSST------WRTTWSCIRCRWASGPAAWWPA 125
PS PR P PG G PP L ++T + R RW P P
Sbjct: 72 GPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPP----PG 127
Query: 126 RAAPAGAETREWRTVARPPPGRPATPGDR---KSGESVGTELPVKGPGRWRCPVEAGSGF 182
A G+ R R PP AT +S S GT P + P +
Sbjct: 128 AATATGSRHR------REPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVP------Y 175
Query: 183 RRLRRRRPGFP-GPRHWEAGL-GKGSGRGGGDAETSGGELAP 222
R R P P GP+ + +GS RG AE G+L P
Sbjct: 176 TREGPREPTPPAGPQGFAGSFCAEGSRRG---AEVGWGKLEP 214
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 43.5 bits (101), Expect = 2e-04
Identities = 64/222 (28%), Positives = 84/222 (37%), Gaps = 38/222 (17%)
Query: 20 VFSVSEPSRPPVNFLLTLSPACR-PRPRCSAEGW-RRCWRRSPRRSRRRRCPQSLQPP-- 75
++S++EP +P SP R P R S GW R R + +R P++ QP
Sbjct: 12 IYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGHTAPRTQQPKPS 71
Query: 76 -PSLRPRCPRRPGQCNDGR---GSPPALPSST------WRTTWSCIRCRWASGPAAWWPA 125
PS PR P PG G PP L ++T + R RW P P
Sbjct: 72 GPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPP----PG 127
Query: 126 RAAPAGAETREWRTVARPPPGRPATPGDR---KSGESVGTELPVKGPGRWRCPVEAGSGF 182
A G+ R R PP AT +S S GT P + P +
Sbjct: 128 AATATGSRHR------REPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVP------Y 175
Query: 183 RRLRRRRPGFP-GPRHWEAGL-GKGSGRGGGDAETSGGELAP 222
R R P P GP+ + +GS RG AE G+L P
Sbjct: 176 TREGPREPTPPAGPQGFAGSFCAEGSRRG---AEVGWGKLEP 214
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/143 (32%), Positives = 50/143 (34%), Gaps = 49/143 (34%)
Query: 54 RCWRRSPRRSRRRRCPQ-SLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIR 112
R W PRR R RR P+ SLQ P RP C R G+ PA
Sbjct: 374 RVWSPPPRRQRPRRLPRASLQEEPKRRPPCAR-------PSGAGPA-------------- 412
Query: 113 CRWASGPAAWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGR- 171
GPAAW P GA T PP RP R+ G P GP
Sbjct: 413 ---REGPAAW------PGGAPT--------PPHARPT---GRRQDPEPGPRAPRGGPASS 452
Query: 172 -WRCPVEAGSGF-----RRLRRR 188
W AG G+ R RRR
Sbjct: 453 GWHAGSAAGRGWDPGGGSRARRR 475
Score = 33.1 bits (74), Expect = 0.20
Identities = 40/143 (27%), Positives = 50/143 (34%), Gaps = 38/143 (26%)
Query: 82 CPRRPGQ--CNDGRGSPPALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRT 139
C + GQ DG G+ + P+ W + P P R A + R
Sbjct: 352 CAHQDGQRRTRDGAGNHASEPARVW-----------SPPPRRQRPRRLPRASLQEEPKR- 399
Query: 140 VARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRRRPGFPGPR--- 196
RPP RP+ G + G P PG P A R RR+ PGPR
Sbjct: 400 --RPPCARPSGAGPAREG-------PAAWPGGAPTPPHA----RPTGRRQDPEPGPRAPR 446
Query: 197 ------HWEAG--LGKGSGRGGG 211
W AG G+G GGG
Sbjct: 447 GGPASSGWHAGSAAGRGWDPGGG 469
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/143 (32%), Positives = 50/143 (34%), Gaps = 49/143 (34%)
Query: 54 RCWRRSPRRSRRRRCPQ-SLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIR 112
R W PRR R RR P+ SLQ P RP C R G+ PA
Sbjct: 374 RVWSPPPRRQRPRRLPRASLQEEPKRRPPCAR-------PSGAGPA-------------- 412
Query: 113 CRWASGPAAWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGR- 171
GPAAW P GA T PP RP R+ G P GP
Sbjct: 413 ---REGPAAW------PGGAPT--------PPHARPT---GRRQDPEPGPRAPRGGPASS 452
Query: 172 -WRCPVEAGSGF-----RRLRRR 188
W AG G+ R RRR
Sbjct: 453 GWHAGSAAGRGWDPGGGSRARRR 475
Score = 33.1 bits (74), Expect = 0.20
Identities = 40/143 (27%), Positives = 50/143 (34%), Gaps = 38/143 (26%)
Query: 82 CPRRPGQ--CNDGRGSPPALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRT 139
C + GQ DG G+ + P+ W + P P R A + R
Sbjct: 352 CAHQDGQRRTRDGAGNHASEPARVW-----------SPPPRRQRPRRLPRASLQEEPKR- 399
Query: 140 VARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRRRPGFPGPR--- 196
RPP RP+ G + G P PG P A R RR+ PGPR
Sbjct: 400 --RPPCARPSGAGPAREG-------PAAWPGGAPTPPHA----RPTGRRQDPEPGPRAPR 446
Query: 197 ------HWEAG--LGKGSGRGGG 211
W AG G+G GGG
Sbjct: 447 GGPASSGWHAGSAAGRGWDPGGG 469
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 42.7 bits (99), Expect = 3e-04
Identities = 64/221 (28%), Positives = 82/221 (37%), Gaps = 36/221 (16%)
Query: 25 EPSRPPVNFLLTLSPACRPRPRCS-AEGWRRCWRRSPRRSRRRRCPQSL------QPPPS 77
EP+ PP SPA + G + R P R+ RR+ P Q PP
Sbjct: 335 EPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPR 394
Query: 78 LRPRCPRRPG---QCNDGRGSPPALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAET 134
RPR R G + + RGSP A +S R S + A A P+G
Sbjct: 395 ERPRAAGRRGRMAEASGRRGSPRARKAS-----------RSQSETSLLGRASAVPSGPPK 443
Query: 135 REWRTVARPPPGRPAT-PGDRKSGESVGTELPVKGPGRWR--CPVEAGSGFRRLRRRRPG 191
P P RP P + ++ G+ RWR ++A G RR+R R P
Sbjct: 444 YPTAEREEPRPPRPRRGPAPTLAAQAAGS------CRRWRSTAEIDAADG-RRVRPRAPA 496
Query: 192 F----PGPRHWEAGLGKGSGRGGGDAETSGGELAP-GPRSP 227
PGP G G D+E S G L P G R P
Sbjct: 497 ARVPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGP 537
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 40.4 bits (93), Expect = 0.001
Identities = 43/136 (31%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 72 LQPPPSLRPRCPRRPGQCNDGRGSPPA--------LPSSTWRTTWSCIRCRWASGPAAWW 123
++ PP+ R P GR P A +P S T W +GPA W
Sbjct: 1 MRGPPAWPLRLLEPPSPAEPGRLLPVACVWAAASRVPGSLSPFTGLRPARLWGAGPALLW 60
Query: 124 PARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFR 183
AA R WR+ R G A+ G +G L +GPG RC AG G
Sbjct: 61 GVGAA------RRWRSGCRGG-GPGASRGVLGLARLLG--LWARGPGSCRCGAFAGPGAP 111
Query: 184 RLRRRR-PGFPGPRHW 198
RL R R PG P W
Sbjct: 112 RLPRARFPGGPAAAAW 127
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 39.7 bits (91), Expect = 0.002
Identities = 58/194 (29%), Positives = 65/194 (33%), Gaps = 42/194 (21%)
Query: 45 PRCSAEGWRRCWRRSPRRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTW 104
PR ++ W C PR R P Q P + R PRRP PP S
Sbjct: 16 PRAASTTWVPCQICGPRERHGPRTPGG-QLPGARRGPGPRRPAPLP---ARPPGALGSVL 71
Query: 105 RTTWSCIRCRWASGPAAWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTEL 164
R P RA P G R AR P RP P R+ G L
Sbjct: 72 R------------------PLRARP-GCRPRRPHPAARCLPLRPHRP-TRRHRRPGGFPL 111
Query: 165 --------PVKGPGRWRCPVEAGSGFRRLRR-RRPGFPGPRHWEAGLGKGSGRGGGDAET 215
P PGR AG + R +RPG G R G GS RGGG
Sbjct: 112 AWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGG--PGSPRGGGT--- 166
Query: 216 SGGELAPGPRSPTA 229
+ PG R P A
Sbjct: 167 ----VGPGDRGPAA 176
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 39.3 bits (90), Expect = 0.003
Identities = 47/150 (31%), Positives = 52/150 (34%), Gaps = 20/150 (13%)
Query: 75 PPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAET 134
PP LR R DGR P S R ASGPA P G
Sbjct: 395 PPGLRGSPGSRGLPGADGRAGVMGPPGS-----------RGASGPAGV----RGPNGDAG 439
Query: 135 REWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRRRPGFPG 194
R P G P +PG+ G E PV PG P G R GFPG
Sbjct: 440 RPGEPGLMGPRGLPGSPGNIGPA---GKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPG 496
Query: 195 PRHWEAGLGKGSGRGGGDAETSGGELAPGP 224
P+ GK + G A +G APGP
Sbjct: 497 PKGPTGDPGKNGDK--GHAGLAGARGAPGP 524
Score = 29.3 bits (64), Expect = 2.9
Identities = 36/121 (29%), Positives = 46/121 (38%), Gaps = 33/121 (27%)
Query: 124 PARAAPAGAETREWRTVARPP--------PGRPATPGDRKSGESVGTELPVKGPGRWRCP 175
P + PAGA R A PP PG+P PG+R VG + PG P
Sbjct: 123 PGQTGPAGA-----RGPAGPPGKAGEDGHPGKPGRPGER---GVVGPQGARGFPGTPGLP 174
Query: 176 VEAGSGFRRLR--------RRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGEL----APG 223
GF+ +R + +PG PG + G+ G A GE APG
Sbjct: 175 -----GFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPG 229
Query: 224 P 224
P
Sbjct: 230 P 230
Score = 28.9 bits (63), Expect = 3.8
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 129 PAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRR 188
P G R+ PPG P PG G + + KG G P+ G R
Sbjct: 46 PPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPM--GLMGPRGPPG 103
Query: 189 RPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSP 227
G PGP+ ++ G+ G+ +G A GP P
Sbjct: 104 AAGAPGPQGFQGPAGE-----PGEPGQTGPAGARGPAGP 137
Score = 28.1 bits (61), Expect = 6.5
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 146 GRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRRRPGFPGPRHWEAGLGKG 205
G P PG R VG G P AGS + PG GP+ G+
Sbjct: 319 GAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEE 378
Query: 206 SGRG-GGDAETSGGELAPGPR 225
RG G+A ++G PG R
Sbjct: 379 GKRGPNGEAGSAGPPGPPGLR 399
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 39.3 bits (90), Expect = 0.003
Identities = 49/164 (29%), Positives = 56/164 (34%), Gaps = 26/164 (15%)
Query: 69 PQSLQPP-PSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPAAWWPARA 127
P S PP P RP CP G C RG+ P W TW A+ A P R+
Sbjct: 111 PASWAPPQPGRRPTCP---GCC---RGAASGAPR--WVRTW-------AAAAVAAGPGRS 155
Query: 128 APAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRR 187
AP W A P G + G + S + P G R GS R
Sbjct: 156 APQREPRAAW---AACPAGPSSAAGPERGHVSCAADEP--GTERSGAAAARGSAGASSRG 210
Query: 188 RRPGFPGPRHWEAGLGKGSG-----RGGGDAETSGGELAPGPRS 226
R RH L G G G G A G +LA P S
Sbjct: 211 RGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPAS 254
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 39.3 bits (90), Expect = 0.003
Identities = 49/164 (29%), Positives = 56/164 (34%), Gaps = 26/164 (15%)
Query: 69 PQSLQPP-PSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPAAWWPARA 127
P S PP P RP CP G C RG+ P W TW A+ A P R+
Sbjct: 111 PASWAPPQPGRRPTCP---GCC---RGAASGAPR--WVRTW-------AAAAVAAGPGRS 155
Query: 128 APAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRR 187
AP W A P G + G + S + P G R GS R
Sbjct: 156 APQREPRAAW---AACPAGPSSAAGPERGHVSCAADEP--GTERSGAAAARGSAGASSRG 210
Query: 188 RRPGFPGPRHWEAGLGKGSG-----RGGGDAETSGGELAPGPRS 226
R RH L G G G G A G +LA P S
Sbjct: 211 RGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPAS 254
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 38.9 bits (89), Expect = 0.004
Identities = 55/176 (31%), Positives = 65/176 (36%), Gaps = 32/176 (18%)
Query: 46 RCSAEGWRR--CWRRSPRRSRRRRC--PQSLQPPPSLRPRCPRRPGQCNDGRGSP----- 96
RC G R C R +R R C P + R P+ G+ + R SP
Sbjct: 102 RCCTRGRGRFPCAGSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALLIC 161
Query: 97 ------PALPSSTWRTTWSCIRCRWASGPAAWWPARAAP----AGAETREWRTVARPP-P 145
PALP++ I R +G AA RA P AG R RT A PP P
Sbjct: 162 IAPRPRPALPAALH------IGARATAGLAA---KRAQPQLCSAGTAARGRRTRASPPTP 212
Query: 146 GRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGF---RRLRRRRPGFPGPRHW 198
RP PG R G + GR G+ R LRR P P P HW
Sbjct: 213 PRPRPPGLRSGDVPRGGARVERPTGRRGAGGRGGAQRIPPRPLRRLVPIHPHPSHW 268
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 38.9 bits (89), Expect = 0.004
Identities = 55/176 (31%), Positives = 65/176 (36%), Gaps = 32/176 (18%)
Query: 46 RCSAEGWRR--CWRRSPRRSRRRRC--PQSLQPPPSLRPRCPRRPGQCNDGRGSP----- 96
RC G R C R +R R C P + R P+ G+ + R SP
Sbjct: 102 RCCTRGRGRFPCAGSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALLIC 161
Query: 97 ------PALPSSTWRTTWSCIRCRWASGPAAWWPARAAP----AGAETREWRTVARPP-P 145
PALP++ I R +G AA RA P AG R RT A PP P
Sbjct: 162 IAPRPRPALPAALH------IGARATAGLAA---KRAQPQLCSAGTAARGRRTRASPPTP 212
Query: 146 GRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGF---RRLRRRRPGFPGPRHW 198
RP PG R G + GR G+ R LRR P P P HW
Sbjct: 213 PRPRPPGLRSGDVPRGGARVERPTGRRGAGGRGGAQRIPPRPLRRLVPIHPHPSHW 268
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 38.9 bits (89), Expect = 0.004
Identities = 52/193 (26%), Positives = 65/193 (33%), Gaps = 29/193 (15%)
Query: 38 SPACRPRPRCSAEGWRRCWRRSPRRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPP 97
SP+ R P G R RR RRRR +S + R R RRP RGS
Sbjct: 363 SPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPA-PPRGSSR 421
Query: 98 ALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRTVARPPPGRPA--TPGDRK 155
+L S R++ R A GP P + G R RPP RPA +P
Sbjct: 422 SL--SRARSSSDSGSGRGAPGPG---PEPGSERGHGGHGKRAKERPPRARPASTSPSPGA 476
Query: 156 SGESVGTELPVKGPGRWRCPVEAGSGFRRLRRRRPGFPGPRHWEAGLGKGSGRG-GGDAE 214
G G E + R PG P PR W + R +
Sbjct: 477 HGRRGGPE-------------------GKSSSRSPG-PHPRSWSSSRSPSKSRSRSAEKR 516
Query: 215 TSGGELAPGPRSP 227
+P P+ P
Sbjct: 517 PHSPSRSPSPKKP 529
>gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo
sapiens]
Length = 267
Score = 38.1 bits (87), Expect = 0.006
Identities = 38/140 (27%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 56 WRRSPRRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRW 115
W S RRR ++ QP + R P R G C G PP WR W + R
Sbjct: 35 WGIRADSSPRRRTVRTAQP----KERSPLRRGSCARGEKRPPGPTGGQWR--WG-VSPRP 87
Query: 116 ASGPAAWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCP 175
++ A P A G E RE R A G +T + G+
Sbjct: 88 SAASATGPPQDRAARGCELREGRAEA----GHSSTSQKDTLSKGSAAAATAVAAGKHLAV 143
Query: 176 VEAGSGFRRLRRRRPGFPGP 195
E G RR PGP
Sbjct: 144 PETRGGVPARRRETANPPGP 163
Score = 29.3 bits (64), Expect = 2.9
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 93 RGSPPALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRTVARPPPGRPATPG 152
RGSPP ++ W T ++ S P W R A + R RT A+P P G
Sbjct: 8 RGSPPGCKAALWSTLGGSMQ---QSAPTGQWGIR-ADSSPRRRTVRT-AQPKERSPLRRG 62
Query: 153 DRKSGESVGTELPVKGPGRWR 173
GE P G+WR
Sbjct: 63 SCARGEK---RPPGPTGGQWR 80
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 38.1 bits (87), Expect = 0.006
Identities = 51/191 (26%), Positives = 63/191 (32%), Gaps = 18/191 (9%)
Query: 44 RPRCSAEGWRRCWRRSPRRSRRR--RCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPS 101
R R A G RR PR R R Q P LRP G+ P + P
Sbjct: 127 RKRRKAGGARRSPPGRPRPEPRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPG 186
Query: 102 STWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVG 161
S W W R GP ++ A T R RPPP A P ++G
Sbjct: 187 SAWAGPWGGRR----PGPPSYEAHLLLRGSAGTAPRRRWDRPPP-YVAPPSYEGPHRTLG 241
Query: 162 TELPVKGPGRWRCPVEAG--------SGFRRLRRRRPGFPGPRHWEAGLGKGSGRGGGDA 213
T+ +GPG + P + G R +R P GL +G G GG
Sbjct: 242 TK---RGPGNSQVPTSSAPAATPARTDGGRTKKRLDPRIYRDVLGAWGLRQGQGLLGGSP 298
Query: 214 ETSGGELAPGP 224
P P
Sbjct: 299 GCGAARARPEP 309
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.7 bits (86), Expect = 0.008
Identities = 33/104 (31%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 124 PARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFR 183
P A P GA R PG PG S G P G P G
Sbjct: 512 PGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGP 571
Query: 184 RLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPRSP 227
R + GFPGP+ + GK RGG GG PGP+ P
Sbjct: 572 RGQPGVMGFPGPKGNDGAPGKNGERGG-----PGG---PGPQGP 607
Score = 32.3 bits (72), Expect = 0.35
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 124 PARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFR 183
P P G + T + PPG GD+ G + PG P E G
Sbjct: 599 PGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENG---- 654
Query: 184 RLRRRRPGFPGPRHWEAGLGKGSGRGGGDAETSGGELAPG 223
+PG PGP+ +AG G+ G GDA G PG
Sbjct: 655 -----KPGEPGPK-GDAG-APGAPGGKGDAGAPGERGPPG 687
Score = 30.8 bits (68), Expect = 1.0
Identities = 34/111 (30%), Positives = 38/111 (34%), Gaps = 13/111 (11%)
Query: 118 GPAAWWPARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVE 177
G A P A P G+ T P G P PG ++GE G G P E
Sbjct: 782 GGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPG--QNGEP-------GGKGERGAPGE 832
Query: 178 AGSGFRRLRRRRPGFPGPRHWEAGLG----KGSGRGGGDAETSGGELAPGP 224
G G PG GP G +GS G G A G PGP
Sbjct: 833 KGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGP 883
Score = 30.4 bits (67), Expect = 1.3
Identities = 31/92 (33%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 144 PPGRPATPGDRKSGESVGTELP-VKGPGRWRCPVEAGSGFRRLRRRRPGFPGPRHWEAGL 202
PPG PGD+ G + G LP + GP P E G PG PG G
Sbjct: 769 PPGPAGQPGDKGEGGAPG--LPGIAGPR--GSPGERGETGPPGPAGFPGAPGQNGEPGGK 824
Query: 203 G-------KGSGRGGGDAETSGGELAPGPRSP 227
G KG G G A GG GP P
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP 856
Score = 29.3 bits (64), Expect = 2.9
Identities = 46/154 (29%), Positives = 55/154 (35%), Gaps = 42/154 (27%)
Query: 80 PRCPRRPGQCNDGRGSPPALPSS--TWRTTWSC------IRCRWASGPAAWWPARAAPAG 131
P P +PG + G PP + S T +S ++ A G A +P A P G
Sbjct: 123 PGIPGQPG--SPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPG 180
Query: 132 AETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRRRPG 191
PPG P T G S S G + P PG +AG G
Sbjct: 181 ------------PPGPPGTSGHPGSPGSPGYQGPPGEPG------QAGPS---------G 213
Query: 192 FPGPRHWEAGLGKGSGRGGGDAETSGGELAPGPR 225
PGP G SG G D E SG PG R
Sbjct: 214 PPGP----PGAIGPSGPAGKDGE-SGRPGRPGER 242
Score = 29.3 bits (64), Expect = 2.9
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 144 PPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRRRPGFPGPRHWEAGLG 203
PPG P T G S + G P PG P + G + G PGP G+
Sbjct: 334 PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGP----PGI- 388
Query: 204 KGSGRGGGDAETSGGELAPG 223
GS G G+ +G APG
Sbjct: 389 NGSPGGKGEMGPAGIPGAPG 408
Score = 29.3 bits (64), Expect = 2.9
Identities = 32/114 (28%), Positives = 37/114 (32%), Gaps = 34/114 (29%)
Query: 124 PARAAPAGAETREWRTVARPPPGRPATP---GDRKSGESVGTELPVKGPGRWRCPVEAGS 180
P A AG R+ + PGR +P GDR S G PG
Sbjct: 1001 PGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPG------APG---------- 1044
Query: 181 GFRRLRRRRPGFPGPRHWEAGLGKGSGRG-------GGDAETSGGELAPGPRSP 227
PG PGP GK RG G +G APGP+ P
Sbjct: 1045 --------APGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090
Score = 27.7 bits (60), Expect = 8.5
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 145 PGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRRRPGFPGPRHWEAGLGK 204
PG PG S + G P PG+ P AG+ PG PG + G+
Sbjct: 875 PGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGN------TGAPGSPGVSGPKGDAGQ 928
Query: 205 GSGRGGGDAETSGGELAPGP 224
+G A+ G APGP
Sbjct: 929 PGEKGSPGAQGPPG--APGP 946
>gi|57242766 hypothetical protein LOC168455 [Homo sapiens]
Length = 235
Score = 37.7 bits (86), Expect = 0.008
Identities = 37/116 (31%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 23 VSEPSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRSPRRSRRRRCPQSLQPPPSLR-PR 81
V +P PP A RP PR +A RR R + R R+ R P PPP P
Sbjct: 108 VPDPPGPPT----ARGQARRPVPRAAARRRRRGARAAAARRRKPRPPPPPPPPPEESCPA 163
Query: 82 CPRRPGQCNDGRGSPPALPSST-WRTTWSCIRCRWASGPAAWWPARAAPAGAETRE 136
P PG C GR ++T TT+ IR G W A A R+
Sbjct: 164 KPVAPGPCFGGRTLEEIWRAATPTLTTFPTIRV----GSDVWGERSLAAARRRARQ 215
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.7 bits (86), Expect = 0.008
Identities = 57/193 (29%), Positives = 67/193 (34%), Gaps = 25/193 (12%)
Query: 38 SPACRPRPRCSAEGWRRC-----W--RRSPRRSRRRRCPQSLQPPPSLRPRCPRRPGQCN 90
+P R R + WRR W RSP+R R R PQ P R R +R G+
Sbjct: 499 TPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQR---PGWSRSRNTQRRGRSR 555
Query: 91 DGR------GSPPALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRTVARPP 144
R SP S RT R R + PA P +R RT AR
Sbjct: 556 SARRGRSHSRSPATRGRSRSRTPARRGRSR-SRTPARRRSRSRTPTRRRSRS-RTPARRG 613
Query: 145 PGRPATPGDRKSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRRRPGFPGPRHWEAGLGK 204
R TP R+S T PV+ R R P R R R P G +
Sbjct: 614 RSRSRTPARRRS----RTRSPVRRRSRSRSPARRSG---RSRSRTPARRGRSRSRTPARR 666
Query: 205 GSGRGGGDAETSG 217
G R A SG
Sbjct: 667 GRSRSRTPARRSG 679
Score = 33.9 bits (76), Expect = 0.12
Identities = 49/154 (31%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 38 SPACRPRPRCSAEGWRRCWRRSPRRSRRRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPP 97
+PA R R R RR R+P R R R R P R G+ R P
Sbjct: 577 TPARRGRSRSRTPARRRSRSRTPTRRRS-------------RSRTPARRGR---SRSRTP 620
Query: 98 ALPSSTWRTTWSCIRCRWASGPAAWWPARA---APAGAETREWRTVARPPPGRPATPGDR 154
A S R S +R R S A R+ PA RT AR R TP R
Sbjct: 621 ARRRSRTR---SPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPA-R 676
Query: 155 KSGESVGTELPVKGPGRWRCPVEAGSGFRRLRRR 188
+SG S +G R R P S R L RR
Sbjct: 677 RSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRR 710
Score = 28.1 bits (61), Expect = 6.5
Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 38 SPACRPRPRCSAEGWRRCWRRSP--RRSR----RRRCPQSLQPPPSLRPRC-PRRPGQCN 90
+PA R R R RR RSP RRSR RR +S P+ R R R P +
Sbjct: 608 TPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRG 667
Query: 91 DGRGSPPALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRTVARPPP--GRP 148
R PA S R+ R R S +R+ + R R+ +R P GR
Sbjct: 668 RSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSR---SLVRRGRSHSRTPQRRGRS 724
Query: 149 ATPGDRKS 156
+ +RK+
Sbjct: 725 GSSSERKN 732
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 37.4 bits (85), Expect = 0.011
Identities = 58/196 (29%), Positives = 72/196 (36%), Gaps = 50/196 (25%)
Query: 26 PSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRS---PRRSRRRRCPQSLQPPPSLRPRC 82
P RP V F S P P A G R+ + R+ PR S L PS RP C
Sbjct: 207 PERPRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTS------SFLSEVPSTRPLC 260
Query: 83 ---------------------PRRPGQCND---GRGSPPALP---SSTWRTTWSCIRCRW 115
PR C + GR SPP SS+ + + R
Sbjct: 261 ATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRT 320
Query: 116 ASGPAA--WWPARAAPAG---AETREWRTVARPPPGRPATP-----GDRKSGESVGTELP 165
P A WPA AP AE+R A+ PP R P R+ G G+ELP
Sbjct: 321 LPAPPAPTAWPAAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGRE-GSELP 379
Query: 166 VKG---PGRWRCPVEA 178
G PGR + P ++
Sbjct: 380 PSGEETPGRRKSPSQS 395
Score = 35.8 bits (81), Expect = 0.031
Identities = 54/195 (27%), Positives = 72/195 (36%), Gaps = 56/195 (28%)
Query: 39 PACRPRPRCSAEGWRRC----WRR----------------SPRRSRRRRCPQ---SLQPP 75
PA P P E WRR W R P+ +R+ + P+ ++PP
Sbjct: 61 PAHSPDPGEGCEAWRRLSADRWPRPASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPP 120
Query: 76 PSLR---PRCPRRP-GQCNDGRG------SPPA----LPSSTWRTTWSCIRCRWASGPAA 121
P R + P RP G C +G SPP +P+S T S + R + A
Sbjct: 121 PRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPEPIPASAAVT--SGLTARGPNTSAT 178
Query: 122 WWPARAAPAGAETR-----EWRTVARPPPGRPATPGDR-KSGESVGTELPVKGPGRWRCP 175
P + + T + R A PPP RP P R SG SV T P
Sbjct: 179 PGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGLSVPTP-----------P 227
Query: 176 VEAGSGFRRLRRRRP 190
AG ++ R RP
Sbjct: 228 EHAGGRRKKFTRTRP 242
Score = 28.5 bits (62), Expect = 5.0
Identities = 45/171 (26%), Positives = 59/171 (34%), Gaps = 23/171 (13%)
Query: 66 RRCPQSLQPP-----PSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
R +L+PP L+PRC R P D P WR + RW PA
Sbjct: 36 RHSASALRPPRLSRGKDLKPRCGRGPAHSPD-----PGEGCEAWRRLSA---DRWPR-PA 86
Query: 121 AWWP--ARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEA 178
+ P A A+ G + + R P P P R VG + PGR
Sbjct: 87 SLSPRAALASAPGQKPQPARQAQLPRPVSGVRPPPR---GRVGLS---QAPGRPLGACAR 140
Query: 179 GSGFRRLRRRRPGFPGPRHWEAGLGKG-SGRGGGDAETSGGELAPGPRSPT 228
G R + P P P A + G + RG + T G + G T
Sbjct: 141 AKGIRLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERT 191
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 37.4 bits (85), Expect = 0.011
Identities = 58/196 (29%), Positives = 72/196 (36%), Gaps = 50/196 (25%)
Query: 26 PSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRS---PRRSRRRRCPQSLQPPPSLRPRC 82
P RP V F S P P A G R+ + R+ PR S L PS RP C
Sbjct: 207 PERPRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTS------SFLSEVPSTRPLC 260
Query: 83 ---------------------PRRPGQCND---GRGSPPALP---SSTWRTTWSCIRCRW 115
PR C + GR SPP SS+ + + R
Sbjct: 261 ATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRT 320
Query: 116 ASGPAA--WWPARAAPAG---AETREWRTVARPPPGRPATP-----GDRKSGESVGTELP 165
P A WPA AP AE+R A+ PP R P R+ G G+ELP
Sbjct: 321 LPAPPAPTAWPAAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGRE-GSELP 379
Query: 166 VKG---PGRWRCPVEA 178
G PGR + P ++
Sbjct: 380 PSGEETPGRRKSPSQS 395
Score = 35.8 bits (81), Expect = 0.031
Identities = 54/195 (27%), Positives = 72/195 (36%), Gaps = 56/195 (28%)
Query: 39 PACRPRPRCSAEGWRRC----WRR----------------SPRRSRRRRCPQ---SLQPP 75
PA P P E WRR W R P+ +R+ + P+ ++PP
Sbjct: 61 PAHSPDPGEGCEAWRRLSADRWPRPASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPP 120
Query: 76 PSLR---PRCPRRP-GQCNDGRG------SPPA----LPSSTWRTTWSCIRCRWASGPAA 121
P R + P RP G C +G SPP +P+S T S + R + A
Sbjct: 121 PRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPEPIPASAAVT--SGLTARGPNTSAT 178
Query: 122 WWPARAAPAGAETR-----EWRTVARPPPGRPATPGDR-KSGESVGTELPVKGPGRWRCP 175
P + + T + R A PPP RP P R SG SV T P
Sbjct: 179 PGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGLSVPTP-----------P 227
Query: 176 VEAGSGFRRLRRRRP 190
AG ++ R RP
Sbjct: 228 EHAGGRRKKFTRTRP 242
Score = 28.5 bits (62), Expect = 5.0
Identities = 45/171 (26%), Positives = 59/171 (34%), Gaps = 23/171 (13%)
Query: 66 RRCPQSLQPP-----PSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
R +L+PP L+PRC R P D P WR + RW PA
Sbjct: 36 RHSASALRPPRLSRGKDLKPRCGRGPAHSPD-----PGEGCEAWRRLSA---DRWPR-PA 86
Query: 121 AWWP--ARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEA 178
+ P A A+ G + + R P P P R VG + PGR
Sbjct: 87 SLSPRAALASAPGQKPQPARQAQLPRPVSGVRPPPR---GRVGLS---QAPGRPLGACAR 140
Query: 179 GSGFRRLRRRRPGFPGPRHWEAGLGKG-SGRGGGDAETSGGELAPGPRSPT 228
G R + P P P A + G + RG + T G + G T
Sbjct: 141 AKGIRLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERT 191
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 37.4 bits (85), Expect = 0.011
Identities = 58/196 (29%), Positives = 72/196 (36%), Gaps = 50/196 (25%)
Query: 26 PSRPPVNFLLTLSPACRPRPRCSAEGWRRCWRRS---PRRSRRRRCPQSLQPPPSLRPRC 82
P RP V F S P P A G R+ + R+ PR S L PS RP C
Sbjct: 207 PERPRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTS------SFLSEVPSTRPLC 260
Query: 83 ---------------------PRRPGQCND---GRGSPPALP---SSTWRTTWSCIRCRW 115
PR C + GR SPP SS+ + + R
Sbjct: 261 ATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRT 320
Query: 116 ASGPAA--WWPARAAPAG---AETREWRTVARPPPGRPATP-----GDRKSGESVGTELP 165
P A WPA AP AE+R A+ PP R P R+ G G+ELP
Sbjct: 321 LPAPPAPTAWPAAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGRE-GSELP 379
Query: 166 VKG---PGRWRCPVEA 178
G PGR + P ++
Sbjct: 380 PSGEETPGRRKSPSQS 395
Score = 35.8 bits (81), Expect = 0.031
Identities = 54/195 (27%), Positives = 72/195 (36%), Gaps = 56/195 (28%)
Query: 39 PACRPRPRCSAEGWRRC----WRR----------------SPRRSRRRRCPQ---SLQPP 75
PA P P E WRR W R P+ +R+ + P+ ++PP
Sbjct: 61 PAHSPDPGEGCEAWRRLSADRWPRPASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPP 120
Query: 76 PSLR---PRCPRRP-GQCNDGRG------SPPA----LPSSTWRTTWSCIRCRWASGPAA 121
P R + P RP G C +G SPP +P+S T S + R + A
Sbjct: 121 PRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPEPIPASAAVT--SGLTARGPNTSAT 178
Query: 122 WWPARAAPAGAETR-----EWRTVARPPPGRPATPGDR-KSGESVGTELPVKGPGRWRCP 175
P + + T + R A PPP RP P R SG SV T P
Sbjct: 179 PGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGLSVPTP-----------P 227
Query: 176 VEAGSGFRRLRRRRP 190
AG ++ R RP
Sbjct: 228 EHAGGRRKKFTRTRP 242
Score = 28.5 bits (62), Expect = 5.0
Identities = 45/171 (26%), Positives = 59/171 (34%), Gaps = 23/171 (13%)
Query: 66 RRCPQSLQPP-----PSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPA 120
R +L+PP L+PRC R P D P WR + RW PA
Sbjct: 36 RHSASALRPPRLSRGKDLKPRCGRGPAHSPD-----PGEGCEAWRRLSA---DRWPR-PA 86
Query: 121 AWWP--ARAAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGPGRWRCPVEA 178
+ P A A+ G + + R P P P R VG + PGR
Sbjct: 87 SLSPRAALASAPGQKPQPARQAQLPRPVSGVRPPPR---GRVGLS---QAPGRPLGACAR 140
Query: 179 GSGFRRLRRRRPGFPGPRHWEAGLGKG-SGRGGGDAETSGGELAPGPRSPT 228
G R + P P P A + G + RG + T G + G T
Sbjct: 141 AKGIRLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERT 191
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 37.4 bits (85), Expect = 0.011
Identities = 46/161 (28%), Positives = 64/161 (39%), Gaps = 34/161 (21%)
Query: 61 RRSR-RRRCPQSLQPPPSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGP 119
R++R R R P +PPP P PG R +P P TW + GP
Sbjct: 592 RKARGRTRLPAKKKPPP---PPPQDGPGS----RTTPDKAPKKTWGQDAGS--GKGGQGP 642
Query: 120 AAWWPAR-------AAPAGAETREWRTVARPPPGRPATPGDRKSGESVGTELPVKGP--- 169
P R ++PA + T PPP P TP D + + +++ V GP
Sbjct: 643 PTRKPPRRTSSHLPSSPAAGDCPILATPESPPPLAPETP-DEAASVAADSDVQVPGPAAS 701
Query: 170 ----GRWRCPVEAGSGFRRLRRRRPGFPGPRHWEAGLGKGS 206
GR R P E+ ++ RR PG +AG+G S
Sbjct: 702 PKPLGRLRPPRES-----KVTRRLPG----ARPDAGMGPPS 733
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.486
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,631,721
Number of Sequences: 37866
Number of extensions: 1037445
Number of successful extensions: 7276
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 563
Number of HSP's that attempted gapping in prelim test: 6189
Number of HSP's gapped (non-prelim): 1513
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.