Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239743055
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743055 PREDICTED: hypothetical protein XP_002342730 [Homo
sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743055 PREDICTED: hypothetical protein XP_002342730 [Homo ... 494 e-140
gi|237820624 pleckstrin homology domain containing, family N mem... 35 0.056
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 35 0.073
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo sap... 33 0.21
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|239751136 PREDICTED: hypothetical protein XP_002347722 isofor... 33 0.21
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|239745629 PREDICTED: hypothetical protein XP_002344147 isofor... 33 0.21
gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Ho... 33 0.21
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 33 0.28
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 33 0.28
gi|239753743 PREDICTED: hypothetical protein [Homo sapiens] 33 0.28
gi|239748232 PREDICTED: hypothetical protein XP_002346598 [Homo ... 33 0.28
gi|239742133 PREDICTED: hypothetical protein XP_002342440 [Homo ... 33 0.28
gi|4827004 single-minded homolog 2 long isoform [Homo sapiens] 33 0.28
gi|4505531 oxysterol binding protein [Homo sapiens] 33 0.28
gi|195232763 ADAM metallopeptidase domain 29 preproprotein [Homo... 32 0.36
gi|195232761 ADAM metallopeptidase domain 29 preproprotein [Homo... 32 0.36
gi|195232759 ADAM metallopeptidase domain 29 preproprotein [Homo... 32 0.36
gi|73765552 ADAM metallopeptidase domain 29 preproprotein [Homo ... 32 0.36
gi|42518070 tight junction protein 2 (zona occludens 2) isoform ... 32 0.36
gi|33636722 plasticity related gene 1 [Homo sapiens] 32 0.36
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 32 0.36
gi|4505965 POU class 4 homeobox 3 [Homo sapiens] 32 0.47
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 32 0.47
gi|148727255 microtubule associated serine/threonine kinase fami... 32 0.47
gi|116268091 PHD finger protein 23 [Homo sapiens] 32 0.62
gi|11967991 SRY-box 17 [Homo sapiens] 32 0.62
gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 32 0.62
>gi|239743055 PREDICTED: hypothetical protein XP_002342730 [Homo
sapiens]
Length = 235
Score = 494 bits (1272), Expect = e-140
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MKAQLLGAGSAHHLCDGCNSHQTPTRLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRP 60
MKAQLLGAGSAHHLCDGCNSHQTPTRLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRP
Sbjct: 1 MKAQLLGAGSAHHLCDGCNSHQTPTRLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRP 60
Query: 61 ELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSACGAGPGVGAAKGALCRTRTQHGH 120
ELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSACGAGPGVGAAKGALCRTRTQHGH
Sbjct: 61 ELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSACGAGPGVGAAKGALCRTRTQHGH 120
Query: 121 SECGPGIPKPPSRESEAGGDGGRQEAWLCVLGKLRFLTLSLNVQAGVKSVTAGARRLLCE 180
SECGPGIPKPPSRESEAGGDGGRQEAWLCVLGKLRFLTLSLNVQAGVKSVTAGARRLLCE
Sbjct: 121 SECGPGIPKPPSRESEAGGDGGRQEAWLCVLGKLRFLTLSLNVQAGVKSVTAGARRLLCE 180
Query: 181 FHGASAGAVLFNARTCSVWASLGLWALPALGHRPGRLYLNAHVVPGPPQSSRPRP 235
FHGASAGAVLFNARTCSVWASLGLWALPALGHRPGRLYLNAHVVPGPPQSSRPRP
Sbjct: 181 FHGASAGAVLFNARTCSVWASLGLWALPALGHRPGRLYLNAHVVPGPPQSSRPRP 235
>gi|237820624 pleckstrin homology domain containing, family N member
1 isoform b [Homo sapiens]
Length = 576
Score = 35.0 bits (79), Expect = 0.056
Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 9/141 (6%)
Query: 17 GCNSHQTPT-RLRLWSDREGPGEDSITL-SPRQEGTCSSPPAPLRPELPSQSHPEYLKAL 74
GC+S TP RL L S + P S T SP + P R + E+L A+
Sbjct: 389 GCSSQHTPLHRLSLESSPDAPDHTSETSHSPLYADPYTPPATSHRRVTDVRGLEEFLSAM 448
Query: 75 GFPR------LLPQRSHEHHVSSSSKSSACGAGPGVGAAKGALCRTRTQHGHSECGPGIP 128
R LP S S+ AGP + + KGAL Q G P
Sbjct: 449 QSARGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLSKKGALQSRAAQRHRGSAKDGGP 508
Query: 129 KPP-SRESEAGGDGGRQEAWL 148
+PP + + + G E WL
Sbjct: 509 QPPDAPQLVSSAREGSPEPWL 529
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 34.7 bits (78), Expect = 0.073
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 22 QTPTRLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRPEL-PSQSHPEYLKALGF-PRL 79
Q + + W ++ G T+ P Q + + PP P RP P Q HP++L ++GF PR
Sbjct: 679 QEQMKQQQWQQQQQQGVLPQTV-PSQPSSSTVPPPPHRPLYQPMQPHPQHLASMGFDPRW 737
Query: 80 LPQRSH 85
L +S+
Sbjct: 738 LMMQSY 743
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.21
Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 27/127 (21%)
Query: 26 RLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSH 85
R + ++R G G TL+P PP+P P +L G RLLP+R
Sbjct: 182 RRKAGAERAGAGP---TLTPPLPAGSPDPPSPAATAAPQPEQRPHLSR-GQWRLLPRRRP 237
Query: 86 EHHVSSSSKSSACGAGP--GVGAAKGA------------------LCRTRTQHGHSECGP 125
E S+ S+ A P G GAA L R+R Q G C P
Sbjct: 238 ERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRPAWAGLGPFWHLRRSRRQDG--LCCP 295
Query: 126 GIPKPPS 132
G P+PPS
Sbjct: 296 G-PRPPS 301
>gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 158
Score = 33.1 bits (74), Expect = 0.21
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 81 PQRSHEHHVSSSSKSSACGAGPGVGAAKGALCR 113
P+R H HH ++ + S A GPG G LCR
Sbjct: 10 PRRCHHHHEATGAASGAAAGGPGAGCV--GLCR 40
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.21
Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 27/127 (21%)
Query: 26 RLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSH 85
R + ++R G G TL+P PP+P P +L G RLLP+R
Sbjct: 182 RRKAGAERAGAGP---TLTPPLPAGSPDPPSPAATAAPQPEQRPHLSR-GQWRLLPRRRP 237
Query: 86 EHHVSSSSKSSACGAGP--GVGAAKGA------------------LCRTRTQHGHSECGP 125
E S+ S+ A P G GAA L R+R Q G C P
Sbjct: 238 ERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRPAWAGLGPFWHLRRSRRQDG--LCCP 295
Query: 126 GIPKPPS 132
G P+PPS
Sbjct: 296 G-PRPPS 301
>gi|239751136 PREDICTED: hypothetical protein XP_002347722 isoform 2
[Homo sapiens]
Length = 158
Score = 33.1 bits (74), Expect = 0.21
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 81 PQRSHEHHVSSSSKSSACGAGPGVGAAKGALCR 113
P+R H HH ++ + S A GPG G LCR
Sbjct: 10 PRRCHHHHEATGAASGAAAGGPGAGCV--GLCR 40
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.21
Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 27/127 (21%)
Query: 26 RLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSH 85
R + ++R G G TL+P PP+P P +L G RLLP+R
Sbjct: 182 RRKAGAERAGAGP---TLTPPLPAGSPDPPSPAATAAPQPEQRPHLSR-GQWRLLPRRRP 237
Query: 86 EHHVSSSSKSSACGAGP--GVGAAKGA------------------LCRTRTQHGHSECGP 125
E S+ S+ A P G GAA L R+R Q G C P
Sbjct: 238 ERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRPAWAGLGPFWHLRRSRRQDG--LCCP 295
Query: 126 GIPKPPS 132
G P+PPS
Sbjct: 296 G-PRPPS 301
>gi|239745629 PREDICTED: hypothetical protein XP_002344147 isoform 2
[Homo sapiens]
Length = 158
Score = 33.1 bits (74), Expect = 0.21
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 81 PQRSHEHHVSSSSKSSACGAGPGVGAAKGALCR 113
P+R H HH ++ + S A GPG G LCR
Sbjct: 10 PRRCHHHHEATGAASGAAAGGPGAGCV--GLCR 40
>gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Homo
sapiens]
Length = 3526
Score = 33.1 bits (74), Expect = 0.21
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 47 QEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSACGAGPGVGA 106
QE +S +PE P + K + R + S E+++ +S + A V +
Sbjct: 2402 QETNVASEIPSKQPETPDDIPQK--KPARYRRAVSYDSKEYYMRLASGNPAIVQDAIVES 2459
Query: 107 AKGALCRTRTQHGHSECGP--GIPKPPSRESEAGGDGGRQE 145
++G + +HG G+ KPP + S + DGG +E
Sbjct: 2460 SEGEAAQQEPEHGEDTIAKVKGLVKPPLKRSRSAPDGGDEE 2500
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 32.7 bits (73), Expect = 0.28
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 35 GPGEDSITLSPRQEGT-------CSSPPAPLRPELPSQSHP 68
GPG LSP EG+ +PPAP+ P PSQS P
Sbjct: 558 GPGGPEPELSPITEGSEARAGPPAPAPPAPIPPPAPSQSSP 598
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 32.7 bits (73), Expect = 0.28
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 35 GPGEDSITLSPRQEGT-------CSSPPAPLRPELPSQSHP 68
GPG LSP EG+ +PPAP+ P PSQS P
Sbjct: 558 GPGGPEPELSPITEGSEARAGPPAPAPPAPIPPPAPSQSSP 598
>gi|239753743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 32.7 bits (73), Expect = 0.28
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 89 VSSSSKSSACGAGPGVG-AAKGALCRTRTQHGHSECGPGIPKPPSRESEAGGDGGRQEAW 147
V++ S A AG V A A+CR+ + S C P +P + +++ GR+E W
Sbjct: 108 VTTGSSVGALSAGKVVSRAGASAVCRSLEE---SPCQPWVPAAAAAKTDGTDLAGRREPW 164
Query: 148 LCVLGKL 154
+ + G L
Sbjct: 165 MALPGSL 171
>gi|239748232 PREDICTED: hypothetical protein XP_002346598 [Homo
sapiens]
Length = 175
Score = 32.7 bits (73), Expect = 0.28
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 89 VSSSSKSSACGAGPGVG-AAKGALCRTRTQHGHSECGPGIPKPPSRESEAGGDGGRQEAW 147
V++ S A AG V A A+CR+ + S C P +P + +++ GR+E W
Sbjct: 108 VTTGSSVGALSAGKVVSRAGASAVCRSLEE---SPCQPWVPAAAAAKTDGTDLAGRREPW 164
Query: 148 LCVLGKL 154
+ + G L
Sbjct: 165 MALPGSL 171
>gi|239742133 PREDICTED: hypothetical protein XP_002342440 [Homo
sapiens]
Length = 175
Score = 32.7 bits (73), Expect = 0.28
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 89 VSSSSKSSACGAGPGVG-AAKGALCRTRTQHGHSECGPGIPKPPSRESEAGGDGGRQEAW 147
V++ S A AG V A A+CR+ + S C P +P + +++ GR+E W
Sbjct: 108 VTTGSSVGALSAGKVVSRAGASAVCRSLEE---SPCQPWVPAAAAAKTDGTDLAGRREPW 164
Query: 148 LCVLGKL 154
+ + G L
Sbjct: 165 MALPGSL 171
>gi|4827004 single-minded homolog 2 long isoform [Homo sapiens]
Length = 667
Score = 32.7 bits (73), Expect = 0.28
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 51 CSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSACGAGPGVGAAKGA 110
C +PP P P P+Q P L L + R+L +R + ++ AC G G AA GA
Sbjct: 580 CCAPPTPEAPGAPAQL-PFVL--LNYHRVLARRGPLGGAAPAASGLACAPG-GPEAATGA 635
Query: 111 LCRTRTQHGHSECGPGIPKP 130
L R R + PG P P
Sbjct: 636 L-RLRHPSPAATSPPGAPLP 654
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 32.7 bits (73), Expect = 0.28
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 100 AGPGVGAAKGALCRTRT------QHGHSECGPGIPKPP---SRESEAGGDGGRQEAWL 148
AGPG GAA G + G + GP P PP S S AGG G +E WL
Sbjct: 39 AGPGSGAASGTVVAAAAGGPGPGAGGVAAAGPA-PAPPTGGSGGSGAGGSGSAREGWL 95
>gi|195232763 ADAM metallopeptidase domain 29 preproprotein [Homo
sapiens]
Length = 820
Score = 32.3 bits (72), Expect = 0.36
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 21 HQTPTRLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLL 80
H+ P + + W P + ++P Q P P PSQS P + + P ++
Sbjct: 726 HELPPQSQPWVM---PSQSQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVM 782
Query: 81 PQRSHEHHVSSSSK 94
P +SH S S+
Sbjct: 783 PSQSHPQLTPSQSQ 796
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 36 PGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSK 94
P + ++P Q P P +PSQSHP+ + P + P + + S S+
Sbjct: 756 PSQSQPPVTPSQSQPRVMPSQSQPPVMPSQSHPQLTPSQSQPPVTPSQRQPQLMPSQSQ 814
>gi|195232761 ADAM metallopeptidase domain 29 preproprotein [Homo
sapiens]
Length = 820
Score = 32.3 bits (72), Expect = 0.36
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 21 HQTPTRLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLL 80
H+ P + + W P + ++P Q P P PSQS P + + P ++
Sbjct: 726 HELPPQSQPWVM---PSQSQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVM 782
Query: 81 PQRSHEHHVSSSSK 94
P +SH S S+
Sbjct: 783 PSQSHPQLTPSQSQ 796
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 36 PGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSK 94
P + ++P Q P P +PSQSHP+ + P + P + + S S+
Sbjct: 756 PSQSQPPVTPSQSQPRVMPSQSQPPVMPSQSHPQLTPSQSQPPVTPSQRQPQLMPSQSQ 814
>gi|195232759 ADAM metallopeptidase domain 29 preproprotein [Homo
sapiens]
Length = 820
Score = 32.3 bits (72), Expect = 0.36
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 21 HQTPTRLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLL 80
H+ P + + W P + ++P Q P P PSQS P + + P ++
Sbjct: 726 HELPPQSQPWVM---PSQSQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVM 782
Query: 81 PQRSHEHHVSSSSK 94
P +SH S S+
Sbjct: 783 PSQSHPQLTPSQSQ 796
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 36 PGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSK 94
P + ++P Q P P +PSQSHP+ + P + P + + S S+
Sbjct: 756 PSQSQPPVTPSQSQPRVMPSQSQPPVMPSQSHPQLTPSQSQPPVTPSQRQPQLMPSQSQ 814
>gi|73765552 ADAM metallopeptidase domain 29 preproprotein [Homo
sapiens]
Length = 820
Score = 32.3 bits (72), Expect = 0.36
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 21 HQTPTRLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLL 80
H+ P + + W P + ++P Q P P PSQS P + + P ++
Sbjct: 726 HELPPQSQPWVM---PSQSQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVM 782
Query: 81 PQRSHEHHVSSSSK 94
P +SH S S+
Sbjct: 783 PSQSHPQLTPSQSQ 796
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 36 PGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSK 94
P + ++P Q P P +PSQSHP+ + P + P + + S S+
Sbjct: 756 PSQSQPPVTPSQSQPRVMPSQSQPPVMPSQSHPQLTPSQSQPPVTPSQRQPQLMPSQSQ 814
>gi|42518070 tight junction protein 2 (zona occludens 2) isoform 1
[Homo sapiens]
Length = 1190
Score = 32.3 bits (72), Expect = 0.36
Identities = 45/186 (24%), Positives = 64/186 (34%), Gaps = 33/186 (17%)
Query: 52 SSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSACGAG-PGVGAAKGA 110
+SPP +PE P ++ F + +S+ V+ + A G P AAK
Sbjct: 985 NSPPPAFKPEPPKAKTQNKEESYDFSKSYEYKSNPSAVAGNETPGASTKGYPPPVAAKPT 1044
Query: 111 LCRTRTQHGHSECGPGIPKPPSRESEAGGDGGRQE-AWLCVLGKLRFLTLSLNVQAGVKS 169
G S P P PP E G Q+ A VLGK++ K
Sbjct: 1045 F-------GRSILKPSTPIPPQEGEEVGESSEEQDNAPKSVLGKVKIFE---------KM 1088
Query: 170 VTAGARRLLCEFHGASAGAVLFNARTCSVWASLGLWALPALGHRPGRLYLNAHVVPGPPQ 229
+ + E A NAR ++A+P H+P PG PQ
Sbjct: 1089 DHKARLQRMQELQEAQ------NARIEIAQKHPDIYAVPIKTHKPD---------PGTPQ 1133
Query: 230 SSRPRP 235
+ RP
Sbjct: 1134 HTSSRP 1139
>gi|33636722 plasticity related gene 1 [Homo sapiens]
Length = 763
Score = 32.3 bits (72), Expect = 0.36
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 16/157 (10%)
Query: 20 SHQTPTRLRLWSDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRL 79
S P+R+ + D GPG + + P C++ P P + QS P + + P
Sbjct: 481 SSSEPSRVGVNGDHHGPGNQYLKIQPGAVPGCNN-SMPGGPRVSIQSRPGSSQLVHIP-- 537
Query: 80 LPQRSHEHHVSSSSKSSACGAGPGVGAAKGALCRTRTQHGHSECGPGIPKPPSRESEAG- 138
+ ++S+S KSS+ A A K C S P I + + + G
Sbjct: 538 ---EETQENISTSPKSSSARAKWLKAAEKTVAC------NRSNSQPRIMQVIAMSKQQGV 588
Query: 139 ---GDGGRQEAWLCVLGKLRFLTLSLNVQAGVKSVTA 172
+ + + G +R+ TL+ + +G+ V A
Sbjct: 589 LQSSPKNTEGSTVSCTGSIRYKTLTDHEPSGIVRVEA 625
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 32.3 bits (72), Expect = 0.36
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 23/110 (20%)
Query: 14 LCDGCN----SHQTPTRLRLW--SDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSH 67
LC+ CN H+T T + + + R P PR+ PP P P PS +
Sbjct: 684 LCEACNIRFSRHETYTVHKRYYCASRHDP-------PPRRPAAPPGPPGPAAPPAPSPAA 736
Query: 68 P---------EYLKALGFPRLLPQRSHEHHVSSSSKSSACGAGPGVGAAK 108
P L A G P P H S S G+GPG+ A+
Sbjct: 737 PVRTRRRRKLYELHAAGAPP-PPPPGHAPAPESPRPGSGSGSGPGLAPAR 785
>gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
Length = 338
Score = 32.0 bits (71), Expect = 0.47
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 56 APLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSAC 98
AP +P+Q HP +L A+G SH H V+ S AC
Sbjct: 134 APEHSVMPAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPAC 176
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 32.0 bits (71), Expect = 0.47
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 86 EHHVSSSSKSSACGAGPGVG-----AAKGALCRTRTQHGHSECGPGIPKPPSRESEAGGD 140
EHH KS+ G G A K +L CGPG P PSR+ D
Sbjct: 1471 EHHGIGDLKSNVLSVEEGEGLRTADAEKSSLSHPGIPPSPPSCGPGSPLMPSRDVHCTTD 1530
Query: 141 GGRQEA 146
G + +A
Sbjct: 1531 GRQCQA 1536
Score = 29.6 bits (65), Expect = 2.3
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 23 TPTRLRLWS----DREGPGEDS---ITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALG 75
TPT+ + D PG DS ++P++ T + L + P + + G
Sbjct: 1146 TPTKQAAFKESLKDSSSPGHDSPLDSKITPQKRHTQAGEGTSLETKTPRTPKRQGTQPPG 1205
Query: 76 FPRLLPQRSHEHHVSSSSKSSACGAGPGVGAAK 108
F LP + H V+SS +S +C A P A+
Sbjct: 1206 F---LPNCTWPHSVNSSPESPSCPAPPTSSTAQ 1235
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 32.0 bits (71), Expect = 0.47
Identities = 38/125 (30%), Positives = 47/125 (37%), Gaps = 26/125 (20%)
Query: 31 SDREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVS 90
S RE PG T P + PP P+ S SH P P+ H
Sbjct: 1970 SGRE-PGAKPSTAEP--SSSPQDPPKPVAAHSESSSHKPRPGPDPGP---PKTKHPDRSL 2023
Query: 91 SSSKSSACGAGPGVGAAKGALCRT-------RTQHGHSECGPGI-PKPPSRESEAG---- 138
SS K P VGA KG T R GHS+ GP + P P +++A
Sbjct: 2024 SSQK-------PSVGATKGKEPATQSLGGSSREGKGHSKSGPDVFPATPGSQNKASDGIG 2076
Query: 139 -GDGG 142
G+GG
Sbjct: 2077 QGEGG 2081
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 31.6 bits (70), Expect = 0.62
Identities = 36/115 (31%), Positives = 43/115 (37%), Gaps = 25/115 (21%)
Query: 32 DREGPGEDSITLSPRQEGTCSSPPAPLRPELPSQ---SHPEYLKALGFPRLLPQRSHEHH 88
D +GP S LSP S PPA L P SQ SHP PR +++ +
Sbjct: 139 DLDGPKVAS-PLSPTSLTHTSRPPAALTPVPLSQGDLSHP--------PRKKDRKNRK-- 187
Query: 89 VSSSSKSSACGAGPGVGAAKGALCRTRTQHGHSECGPGIPKPPSRESEAGGDGGR 143
GPG GA G L R R G E I K R+ + G R
Sbjct: 188 -----------LGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDR 231
>gi|11967991 SRY-box 17 [Homo sapiens]
Length = 414
Score = 31.6 bits (70), Expect = 0.62
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 49 GTCSSPPAPLRPEL-PSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSACGAGPGVGAA 107
G P P+ P L P + P L P L HV + S GAG G G
Sbjct: 261 GPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSAL-------HVYYGAMGSP-GAGGGRGFQ 312
Query: 108 KGALCRTRTQHGHSECGPGIPKPP 131
+ + QH H GPG P PP
Sbjct: 313 MQPQHQHQHQHQHHPPGPGQPSPP 336
>gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 31.6 bits (70), Expect = 0.62
Identities = 55/187 (29%), Positives = 67/187 (35%), Gaps = 42/187 (22%)
Query: 52 SSPPAPLRPELPSQSHPEYLKALGFPRLLPQRSHEHHVSSSSKSSACGAGPGVGAAK--G 109
SSPPAPL PS+ + G + S A G P VGA + G
Sbjct: 45 SSPPAPL----PSRDRCGRRRLRG---------------TWSGRLALGKRPTVGARRSPG 85
Query: 110 ALCRTRTQHGHSECGPGIPKPPSRESEAGGDGGRQEAWLCVLGKLRFLTLSLNVQAGVKS 169
A R H CGPG+ A G R + G +R + + G+ +
Sbjct: 86 AGPGRRMDENHERCGPGV---EFVAVVASGPRWRDQ------GLVRQVLVGAE---GLPA 133
Query: 170 VTAGAR-RLLCEFHGASAGAVLFNARTCSVWASLGLWALPALGHRPGRLYLNAHVVPGPP 228
AG R L S G V AR C L P L PG L L VPGP
Sbjct: 134 SQAGRRGTALVSVAVGSRGRVFLVARPC-----LRFLPQPPLCGLPGALAL---AVPGPC 185
Query: 229 QSSRPRP 235
S+ P P
Sbjct: 186 LSAPPSP 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,558,938
Number of Sequences: 37866
Number of extensions: 681825
Number of successful extensions: 3494
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 3382
Number of HSP's gapped (non-prelim): 216
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.