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Search of human proteins with 239743002
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743002 PREDICTED: hypothetical protein XP_002342694 [Homo
sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754381 PREDICTED: similar to FLJ44955 protein [Homo sapiens] 414 e-116
gi|239748982 PREDICTED: hypothetical protein XP_002346844 [Homo ... 414 e-116
gi|239743002 PREDICTED: hypothetical protein XP_002342694 [Homo ... 414 e-116
gi|239753728 PREDICTED: similar to hCG1997218 [Homo sapiens] 150 7e-37
gi|239748245 PREDICTED: hypothetical protein XP_002346621 [Homo ... 150 7e-37
gi|239742146 PREDICTED: hypothetical protein XP_002342415 [Homo ... 150 7e-37
gi|45827734 small proline-rich protein 1A [Homo sapiens] 31 0.62
gi|148743793 osteoprotegerin precursor [Homo sapiens] 30 1.4
gi|83582815 small proline-rich protein 1B [Homo sapiens] 30 1.8
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso... 29 3.1
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso... 29 3.1
gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b ... 28 5.2
gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a ... 28 5.2
gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c ... 28 5.2
gi|27502386 nuclear factor of activated T-cells, cytosolic compo... 28 6.9
gi|38146094 mediator complex subunit 16 [Homo sapiens] 28 6.9
gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo sa... 27 9.0
gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo sa... 27 9.0
>gi|239754381 PREDICTED: similar to FLJ44955 protein [Homo sapiens]
Length = 201
Score = 414 bits (1065), Expect = e-116
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MALTKMLIMIWTMKSRLSWSQMEMRNLLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELER 60
MALTKMLIMIWTMKSRLSWSQMEMRNLLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELER
Sbjct: 1 MALTKMLIMIWTMKSRLSWSQMEMRNLLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELER 60
Query: 61 DDLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQPDNVIEKKILFSEEKFKL 120
DDLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQPDNVIEKKILFSEEKFKL
Sbjct: 61 DDLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQPDNVIEKKILFSEEKFKL 120
Query: 121 AAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQP 180
AAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQP
Sbjct: 121 AAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQP 180
Query: 181 KDLVPCVPATPAMAKRGQGTV 201
KDLVPCVPATPAMAKRGQGTV
Sbjct: 181 KDLVPCVPATPAMAKRGQGTV 201
>gi|239748982 PREDICTED: hypothetical protein XP_002346844 [Homo
sapiens]
Length = 201
Score = 414 bits (1065), Expect = e-116
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MALTKMLIMIWTMKSRLSWSQMEMRNLLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELER 60
MALTKMLIMIWTMKSRLSWSQMEMRNLLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELER
Sbjct: 1 MALTKMLIMIWTMKSRLSWSQMEMRNLLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELER 60
Query: 61 DDLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQPDNVIEKKILFSEEKFKL 120
DDLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQPDNVIEKKILFSEEKFKL
Sbjct: 61 DDLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQPDNVIEKKILFSEEKFKL 120
Query: 121 AAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQP 180
AAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQP
Sbjct: 121 AAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQP 180
Query: 181 KDLVPCVPATPAMAKRGQGTV 201
KDLVPCVPATPAMAKRGQGTV
Sbjct: 181 KDLVPCVPATPAMAKRGQGTV 201
>gi|239743002 PREDICTED: hypothetical protein XP_002342694 [Homo
sapiens]
Length = 201
Score = 414 bits (1065), Expect = e-116
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MALTKMLIMIWTMKSRLSWSQMEMRNLLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELER 60
MALTKMLIMIWTMKSRLSWSQMEMRNLLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELER
Sbjct: 1 MALTKMLIMIWTMKSRLSWSQMEMRNLLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELER 60
Query: 61 DDLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQPDNVIEKKILFSEEKFKL 120
DDLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQPDNVIEKKILFSEEKFKL
Sbjct: 61 DDLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQPDNVIEKKILFSEEKFKL 120
Query: 121 AAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQP 180
AAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQP
Sbjct: 121 AAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQP 180
Query: 181 KDLVPCVPATPAMAKRGQGTV 201
KDLVPCVPATPAMAKRGQGTV
Sbjct: 181 KDLVPCVPATPAMAKRGQGTV 201
>gi|239753728 PREDICTED: similar to hCG1997218 [Homo sapiens]
Length = 171
Score = 150 bits (379), Expect = 7e-37
Identities = 74/107 (69%), Positives = 87/107 (81%)
Query: 27 LLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELERDDLGYLVEEVSKQQSIQEVTWVLLKA 86
L+G +K YVLAKRL AFCPCP+DLWN E+ERDDL LVEE+SKQQSIQEVTW LLK+
Sbjct: 39 LVGNWSKGDSYVLAKRLAAFCPCPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKS 98
Query: 87 FSFIREAEHKRLENLQPDNVIEKKILFSEEKFKLAAKIWISNEELNI 133
F+FIREA HK LENLQPDN +EKKI FSEEK K A++I+I ++ I
Sbjct: 99 FNFIREAVHKSLENLQPDNALEKKIPFSEEKLKPASEIYIMKSQMLI 145
>gi|239748245 PREDICTED: hypothetical protein XP_002346621 [Homo
sapiens]
Length = 171
Score = 150 bits (379), Expect = 7e-37
Identities = 74/107 (69%), Positives = 87/107 (81%)
Query: 27 LLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELERDDLGYLVEEVSKQQSIQEVTWVLLKA 86
L+G +K YVLAKRL AFCPCP+DLWN E+ERDDL LVEE+SKQQSIQEVTW LLK+
Sbjct: 39 LVGNWSKGDSYVLAKRLAAFCPCPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKS 98
Query: 87 FSFIREAEHKRLENLQPDNVIEKKILFSEEKFKLAAKIWISNEELNI 133
F+FIREA HK LENLQPDN +EKKI FSEEK K A++I+I ++ I
Sbjct: 99 FNFIREAVHKSLENLQPDNALEKKIPFSEEKLKPASEIYIMKSQMLI 145
>gi|239742146 PREDICTED: hypothetical protein XP_002342415 [Homo
sapiens]
Length = 171
Score = 150 bits (379), Expect = 7e-37
Identities = 74/107 (69%), Positives = 87/107 (81%)
Query: 27 LLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELERDDLGYLVEEVSKQQSIQEVTWVLLKA 86
L+G +K YVLAKRL AFCPCP+DLWN E+ERDDL LVEE+SKQQSIQEVTW LLK+
Sbjct: 39 LVGNWSKGDSYVLAKRLAAFCPCPRDLWNSEMERDDLECLVEEISKQQSIQEVTWALLKS 98
Query: 87 FSFIREAEHKRLENLQPDNVIEKKILFSEEKFKLAAKIWISNEELNI 133
F+FIREA HK LENLQPDN +EKKI FSEEK K A++I+I ++ I
Sbjct: 99 FNFIREAVHKSLENLQPDNALEKKIPFSEEKLKPASEIYIMKSQMLI 145
>gi|45827734 small proline-rich protein 1A [Homo sapiens]
Length = 89
Score = 31.2 bits (69), Expect = 0.62
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 135 PQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQPKDLVPCVPATP 191
PQ + V + CQ Q+ + +T P K P+ P QPK PC P P
Sbjct: 14 PQPQQQQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPKVPEPCQPKVP 70
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 30.0 bits (66), Expect = 1.4
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 67 VEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLENLQP----DNVIEKKILFSEEKFKLAA 122
VE + +Q S QE T+ LLK + + + + +Q +N +++ I + F+
Sbjct: 237 VERIKRQHSSQEQTFQLLKLWKHQNKDQDIVKKIIQDIDLCENSVQRHIGHANLTFEQLR 296
Query: 123 KIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWR 160
+ S + +D E +AC+ S Q L L WR
Sbjct: 297 SLMESLPGKKVGAEDI-EKTIKACKPSDQILKLLSLWR 333
>gi|83582815 small proline-rich protein 1B [Homo sapiens]
Length = 89
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 135 PQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCSVQPKDLVPCVPATP 191
PQ + V + CQ Q+ + +T P K P+ P QPK PC P P
Sbjct: 14 PQLQQQQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPKVPEPCHPKVP 70
>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3p [Homo sapiens]
Length = 476
Score = 28.9 bits (63), Expect = 3.1
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 27 LLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELERDDLGYLVEEVSKQQSIQEVTWVLLKA 86
LLG TR ++A+R P + + N +LE+ + EE +++ +E+ L+
Sbjct: 198 LLGEMEAKTRELIARRTT---PLLEYIKNRKLEKQRIR---EEKREERRRRELEKKRLRE 251
Query: 87 FSFIREAEHKRLENLQPDNVIEKKILFSEEKFKLAAKIWISNEELNINPQDNGENV 142
R E +R + + D +KKI E + KL K E P++ GE +
Sbjct: 252 EEKRRRREEERCKKKETDK--QKKIAEKEVRIKLLKKPEKGEEPTTEKPKERGEEI 305
>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3pdelta [Homo sapiens]
Length = 443
Score = 28.9 bits (63), Expect = 3.1
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 27 LLGIGAKVTRYVLAKRLVAFCPCPKDLWNFELERDDLGYLVEEVSKQQSIQEVTWVLLKA 86
LLG TR ++A+R P + + N +LE+ + EE +++ +E+ L+
Sbjct: 165 LLGEMEAKTRELIARRTT---PLLEYIKNRKLEKQRIR---EEKREERRRRELEKKRLRE 218
Query: 87 FSFIREAEHKRLENLQPDNVIEKKILFSEEKFKLAAKIWISNEELNINPQDNGENV 142
R E +R + + D +KKI E + KL K E P++ GE +
Sbjct: 219 EEKRRRREEERCKKKETDK--QKKIAEKEVRIKLLKKPEKGEEPTTEKPKERGEEI 272
>gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b
[Homo sapiens]
Length = 613
Score = 28.1 bits (61), Expect = 5.2
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 62 DLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLEN-LQPDNVIEKKILF--SEEKF 118
D+ YL E VSK + ++ + F FI + + L++ L P + ++ + +E F
Sbjct: 49 DMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCF 108
Query: 119 KLAAKIWISNEELNIN 134
L K +++ +N
Sbjct: 109 SLRMKSTLTSRGRTLN 124
>gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a
[Homo sapiens]
Length = 667
Score = 28.1 bits (61), Expect = 5.2
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 62 DLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLEN-LQPDNVIEKKILF--SEEKF 118
D+ YL E VSK + ++ + F FI + + L++ L P + ++ + +E F
Sbjct: 103 DMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCF 162
Query: 119 KLAAKIWISNEELNIN 134
L K +++ +N
Sbjct: 163 SLRMKSTLTSRGRTLN 178
>gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c
[Homo sapiens]
Length = 669
Score = 28.1 bits (61), Expect = 5.2
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 62 DLGYLVEEVSKQQSIQEVTWVLLKAFSFIREAEHKRLEN-LQPDNVIEKKILF--SEEKF 118
D+ YL E VSK + ++ + F FI + + L++ L P + ++ + +E F
Sbjct: 105 DMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCF 164
Query: 119 KLAAKIWISNEELNIN 134
L K +++ +N
Sbjct: 165 SLRMKSTLTSRGRTLN 180
>gi|27502386 nuclear factor of activated T-cells, cytosolic
component 1 isoform C [Homo sapiens]
Length = 930
Score = 27.7 bits (60), Expect = 6.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 172 PRPPCSVQPKDLVPCVPATPAMAKRGQ 198
P PP + +P L PC PA P R Q
Sbjct: 837 PLPPATQEPTCLQPCSPACPPATGRPQ 863
>gi|38146094 mediator complex subunit 16 [Homo sapiens]
Length = 877
Score = 27.7 bits (60), Expect = 6.9
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 118 FKLAAKIWISNEELNINPQDNGENVCRACQRSSQQLLLSQTWRPRRKKWFHGLGPRPPCS 177
F+L K+WI + + + V C SQ L+ S W P L P+ P
Sbjct: 690 FRLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLR 749
Query: 178 VQ 179
+Q
Sbjct: 750 LQ 751
>gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo
sapiens]
Length = 484
Score = 27.3 bits (59), Expect = 9.0
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 156 SQTWRPRRKKWFHGLGPRPPCSVQPKDLVPCVP 188
S+ W R W+ L RP C D+ CVP
Sbjct: 341 SRLWTARHNAWYAALATRPGCKGYSTDV--CVP 371
>gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo
sapiens]
Length = 507
Score = 27.3 bits (59), Expect = 9.0
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 156 SQTWRPRRKKWFHGLGPRPPCSVQPKDLVPCVP 188
S+ W R W+ L RP C D+ CVP
Sbjct: 364 SRLWTARHNAWYAALATRPGCKGYSTDV--CVP 394
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,190,765
Number of Sequences: 37866
Number of extensions: 358363
Number of successful extensions: 1098
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 18
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.