Guide to the Human Genome
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Name: LOC100291141 Sequence: fasta or formatted (201aa) NCBI GI: 239748982
Description:

PREDICTED: hypothetical protein XP_002346844

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         12           2
 C cysteine            3.0          6           1
 D aspartate           3.0          6           2
 E glutamate           7.5         15           2
 F phenylalanine       3.5          7           1
 G glycine             4.0          8           1
 H histidine           1.0          2           1
 I isoleucine          5.0         10           1
 K lysine              8.5         17           2
 L leucine            11.4         23           3
 M methionine          3.5          7           1
 N asparagine          4.5          9           1
 P proline             6.0         12           2
 Q glutamine           6.0         12           2
 R arginine            7.0         14           2
 S serine              6.0         12           2
 T threonine           3.5          7           1
 V valine              6.5         13           1
 W tryptophan          3.5          7           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346844 
LOC100293762          1.000   PREDICTED: similar to FLJ44955 protein 
LOC100289222          1.000   PREDICTED: hypothetical protein XP_002342694 
LOC100293187          0.321   PREDICTED: similar to hCG1997218 
LOC100291294          0.321   PREDICTED: hypothetical protein XP_002346621 
LOC100289257          0.321   PREDICTED: hypothetical protein XP_002342415 
SPRR1A                0.015   small proline-rich protein 1A 
TNFRSF11B             0.013   osteoprotegerin precursor 
SPRR1B                0.013   small proline-rich protein 1B 
UPF3A                 0.010   UPF3 regulator of nonsense transcripts homolog A iso...
UPF3A                 0.010   UPF3 regulator of nonsense transcripts homolog A iso...
HIF3A                 0.008   hypoxia inducible factor 3, alpha subunit isoform b ...
HIF3A                 0.008   hypoxia inducible factor 3, alpha subunit isoform a ...
HIF3A                 0.008   hypoxia inducible factor 3, alpha subunit isoform c ...
NFATC1                0.008   nuclear factor of activated T-cells, cytosolic compo...
MED16                 0.008   mediator complex subunit 16 
LDHD                  0.005   D-lactate dehydrogenase isoform 2 precursor 
LDHD                  0.005   D-lactate dehydrogenase isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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