Search of human proteins with 239742716

Search of human proteins with 239742716

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742716 PREDICTED: hypothetical protein XP_002342633 [Homo
sapiens]
         (170 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754173 PREDICTED: hypothetical protein [Homo sapiens]           332   7e-92
gi|239748693 PREDICTED: hypothetical protein XP_002346765 [Homo ...   332   7e-92
gi|239742716 PREDICTED: hypothetical protein XP_002342633 [Homo ...   332   7e-92
gi|134142826 pericentriolar material 1 [Homo sapiens]                  30   0.77 
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H...    30   1.0  
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig...    30   1.0  
gi|46409304 glutamate-rich 1 [Homo sapiens]                            29   1.7  
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]              29   1.7  
gi|239754351 PREDICTED: hypothetical protein [Homo sapiens]            28   2.9  
gi|239748899 PREDICTED: hypothetical protein [Homo sapiens]            28   2.9  
gi|239742923 PREDICTED: hypothetical protein XP_002342686 [Homo ...    28   2.9  
gi|23111026 sorting nexin 11 [Homo sapiens]                            28   2.9  
gi|23111028 sorting nexin 11 [Homo sapiens]                            28   2.9  
gi|194018550 c-Maf-inducing protein isoform C-mip [Homo sapiens]       28   3.8  
gi|29789255 c-Maf-inducing protein isoform Tc-mip [Homo sapiens]       28   3.8  
gi|66346698 alpha-N-acetylglucosaminidase precursor [Homo sapiens]     28   3.8  
gi|109826351 melanophilin isoform 2 [Homo sapiens]                     28   3.8  
gi|13129108 melanophilin isoform 1 [Homo sapiens]                      28   3.8  
gi|82659087 staufen isoform b [Homo sapiens]                           28   5.0  
gi|223633935 hypothetical protein LOC254427 [Homo sapiens]             27   6.5  
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s...    27   6.5  
gi|224493919 zinc finger and SCAN domain containing 18 isoform 2...    27   8.5  
gi|224493912 zinc finger and SCAN domain containing 18 isoform 3...    27   8.5  
gi|226371704 zinc finger and SCAN domain containing 18 isoform 3...    27   8.5  
gi|60097902 filaggrin [Homo sapiens]                                   27   8.5  
gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens]     27   8.5  
gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens]       27   8.5  
gi|118402582 cell division cycle 20 [Homo sapiens]                     27   8.5  
gi|224493905 zinc finger and SCAN domain containing 18 isoform 1...    27   8.5  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    27   8.5  

>gi|239754173 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score =  332 bits (852), Expect = 7e-92
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MVVSISQLQIQIQVLNESIATERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDL 60
           MVVSISQLQIQIQVLNESIATERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDL
Sbjct: 1   MVVSISQLQIQIQVLNESIATERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDL 60

Query: 61  DFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLT 120
           DFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLT
Sbjct: 61  DFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLT 120

Query: 121 WSEPSWTLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK 170
           WSEPSWTLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK
Sbjct: 121 WSEPSWTLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK 170


>gi|239748693 PREDICTED: hypothetical protein XP_002346765 [Homo
           sapiens]
          Length = 170

 Score =  332 bits (852), Expect = 7e-92
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MVVSISQLQIQIQVLNESIATERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDL 60
           MVVSISQLQIQIQVLNESIATERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDL
Sbjct: 1   MVVSISQLQIQIQVLNESIATERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDL 60

Query: 61  DFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLT 120
           DFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLT
Sbjct: 61  DFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLT 120

Query: 121 WSEPSWTLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK 170
           WSEPSWTLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK
Sbjct: 121 WSEPSWTLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK 170


>gi|239742716 PREDICTED: hypothetical protein XP_002342633 [Homo
           sapiens]
          Length = 170

 Score =  332 bits (852), Expect = 7e-92
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MVVSISQLQIQIQVLNESIATERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDL 60
           MVVSISQLQIQIQVLNESIATERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDL
Sbjct: 1   MVVSISQLQIQIQVLNESIATERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDL 60

Query: 61  DFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLT 120
           DFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLT
Sbjct: 61  DFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLT 120

Query: 121 WSEPSWTLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK 170
           WSEPSWTLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK
Sbjct: 121 WSEPSWTLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK 170


>gi|134142826 pericentriolar material 1 [Homo sapiens]
          Length = 2024

 Score = 30.4 bits (67), Expect = 0.77
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 16   NESIATERKVFRNDNSSGRKP--SVPTFFQSVCSEGGSRPKDSQT-DLDFSSSRA----- 67
            N S  +E++     NSSG+    + P  F+S  S G  +P++ +  + +  SSR      
Sbjct: 1155 NISTPSEQQQPLAQNSSGKTEYMAFPKPFESSSSIGAEKPRNKKLPEEEVESSRTPWLYE 1214

Query: 68   --GAAEKPPLDTGSLKTGEKSGRENR 91
              G  EKP + TG   + EKS   NR
Sbjct: 1215 QEGEVEKPFIKTGFSVSVEKSTSSNR 1240


>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
           sapiens]
          Length = 340

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 42  FQSVCSEGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEK---------SGRENRG 92
           FQ + SE G+  ++ +     ++  AGA      +TG++  GE          S  E  G
Sbjct: 102 FQDIPSEAGAAGEEEEAGDGGAAGAAGAIG----ETGAVGKGEAEATGEGGSASEAEGAG 157

Query: 93  ETGASASLRVRVRARQS 109
           E GA   LRV   AR+S
Sbjct: 158 EGGAGDELRVAEEARES 174


>gi|169216749 PREDICTED: similar to Putative paraneoplastic
           antigen-like protein 6B-like protein [Homo sapiens]
          Length = 340

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 42  FQSVCSEGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEK---------SGRENRG 92
           FQ + SE G+  ++ +     ++  AGA      +TG++  GE          S  E  G
Sbjct: 102 FQDIPSEAGAAGEEEEAGDGGAAGAAGAIG----ETGAVGKGEAEATGEGGSASEAEGAG 157

Query: 93  ETGASASLRVRVRARQS 109
           E GA   LRV   AR+S
Sbjct: 158 EGGAGDELRVAEEARES 174


>gi|46409304 glutamate-rich 1 [Homo sapiens]
          Length = 443

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 52  RPKDSQTDLDFSSSRAGAAEKPPLDTGS---LKTGEKSGRENRGETGASASLRVRVRARQ 108
           +P+DS  +         A E+  +DT        GE+  ++ R E GA AS     RARQ
Sbjct: 191 QPEDSSNE---GEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDGADASEEDLTRARQ 247

Query: 109 SRGASS 114
             GA +
Sbjct: 248 EEGADA 253


>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
          Length = 1729

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 44   SVCSEGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASL 100
            S C E G R   S +         G   + PL+   L  GE SG E +GE  +S+SL
Sbjct: 1371 SQCPEPGLRHNGSLSP--------GLEARDPLEARELGVGETSGPETQGEDYSSSSL 1419


>gi|239754351 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 174

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 66  RAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLTWSEPS 125
           RAGA  +PPL   SL +     R +    GA+ +   + RA +           TW+ P 
Sbjct: 20  RAGAGGRPPLLPPSLPSIGTRWRRDAALKGATPTGLAQARAVERERD-------TWA-PP 71

Query: 126 WTLRAPLLKISHPNLLPNI 144
           W L A +  ++ P  +P I
Sbjct: 72  WPLPAQVASLAFPAPVPGI 90


>gi|239748899 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 174

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 66  RAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLTWSEPS 125
           RAGA  +PPL   SL +     R +    GA+ +   + RA +           TW+ P 
Sbjct: 20  RAGAGGRPPLLPPSLPSIGTRWRRDAALKGATPTGLAQARAVERERD-------TWA-PP 71

Query: 126 WTLRAPLLKISHPNLLPNI 144
           W L A +  ++ P  +P I
Sbjct: 72  WPLPAQVASLAFPAPVPGI 90


>gi|239742923 PREDICTED: hypothetical protein XP_002342686 [Homo
           sapiens]
          Length = 174

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 66  RAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLSLTWSEPS 125
           RAGA  +PPL   SL +     R +    GA+ +   + RA +           TW+ P 
Sbjct: 20  RAGAGGRPPLLPPSLPSIGTRWRRDAALKGATPTGLAQARAVERERD-------TWA-PP 71

Query: 126 WTLRAPLLKISHPNLLPNI 144
           W L A +  ++ P  +P I
Sbjct: 72  WPLPAQVASLAFPAPVPGI 90


>gi|23111026 sorting nexin 11 [Homo sapiens]
          Length = 270

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 36  PSVPTFFQSVCSEGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKT 82
           P++P     +C + G RPK+  + L       G     PLD G L+T
Sbjct: 221 PTLPPLSSPLCCDFG-RPKEGTSTLQSVRRAVGGDHAVPLDPGQLET 266


>gi|23111028 sorting nexin 11 [Homo sapiens]
          Length = 270

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 36  PSVPTFFQSVCSEGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKT 82
           P++P     +C + G RPK+  + L       G     PLD G L+T
Sbjct: 221 PTLPPLSSPLCCDFG-RPKEGTSTLQSVRRAVGGDHAVPLDPGQLET 266


>gi|194018550 c-Maf-inducing protein isoform C-mip [Homo sapiens]
          Length = 773

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 127 TLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK 170
           ++  P     HP +LPN+ +  +    S Y++  N+    P +K
Sbjct: 310 SMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLK 353


>gi|29789255 c-Maf-inducing protein isoform Tc-mip [Homo sapiens]
          Length = 679

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 127 TLRAPLLKISHPNLLPNIQSAAIQQKISLYQDSSNTSQGKPDVK 170
           ++  P     HP +LPN+ +  +    S Y++  N+    P +K
Sbjct: 216 SMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLK 259


>gi|66346698 alpha-N-acetylglucosaminidase precursor [Homo sapiens]
          Length = 743

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 59  DLDFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSRGASSLCLS 118
           D   S  RA AA KP LDT SL  G  +    RG TG +A+  +    R   G       
Sbjct: 47  DFSVSVERALAA-KPGLDTYSLGGGGAARVRVRGSTGVAAAAGLHRYLRDFCGC-----H 100

Query: 119 LTWSEPSWTLRAPL 132
           + WS     L  PL
Sbjct: 101 VAWSGSQLRLPRPL 114


>gi|109826351 melanophilin isoform 2 [Homo sapiens]
          Length = 572

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 5   ISQLQIQIQVLNESIATERKVFRNDNSSG---RKPSVPTFFQSVCSEGGSRPKDSQTDLD 61
           + Q + ++  +   IA  R        SG   RK ++P F   V  + G RP+D   D  
Sbjct: 448 VQQAESEVSDIESRIAALRAAGLTVKPSGKPRRKSNLPIFLPRVAGKLGKRPEDPNAD-- 505

Query: 62  FSSSRAGAAEKPPL 75
             SS A A   P L
Sbjct: 506 -PSSEAKAMAVPYL 518


>gi|13129108 melanophilin isoform 1 [Homo sapiens]
          Length = 600

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 5   ISQLQIQIQVLNESIATERKVFRNDNSSG---RKPSVPTFFQSVCSEGGSRPKDSQTDLD 61
           + Q + ++  +   IA  R        SG   RK ++P F   V  + G RP+D   D  
Sbjct: 476 VQQAESEVSDIESRIAALRAAGLTVKPSGKPRRKSNLPIFLPRVAGKLGKRPEDPNAD-- 533

Query: 62  FSSSRAGAAEKPPL 75
             SS A A   P L
Sbjct: 534 -PSSEAKAMAVPYL 546


>gi|82659087 staufen isoform b [Homo sapiens]
          Length = 577

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 9  QIQIQVLNESIATERKVFRNDNSSGRKP---SVPTFFQSVCSEGGSRP-KDSQTDLDFSS 64
          Q+Q+QV N S A       N N S       S+P+   S+ SE   RP ++S       +
Sbjct: 3  QVQVQVQNPSAALSGSQILNKNQSLLSQPLMSIPSTTSSLPSENAGRPIQNSALPSASIT 62

Query: 65 SRAGAAEK--PPLDTGSL--KTGEK 85
          S + AAE   P ++  +L  K G+K
Sbjct: 63 STSAAAESITPTVELNALCMKLGKK 87


>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
          Length = 435

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 48  EGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRAR 107
           E  S P + +  +D      GA E   L  G+   G     +   +  A         A 
Sbjct: 96  ESTSSPSEPEDVIDLVQPAPGAGEAEGLPEGTQAAGPAPAGKEHRKQDAETPPPPDPPAP 155

Query: 108 QSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQ-QKIS 154
           ++  A    L  T   P   LRAP   + HP LL ++ +  +  QKIS
Sbjct: 156 ETLLAPPP-LPSTPDPPRRELRAPSPPVEHPRLLRSVPTPLVMAQKIS 202


>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
           sapiens]
          Length = 908

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 21  TERKVFRNDNSSGRKPSVPTFFQSVCSEGGSRPKDSQTDLDFSSSRAGAAEKPP 74
           T+RK  R   S GR+    +  QS  ++     K  + +LD   +R G A  PP
Sbjct: 83  TDRKRSRKSPSPGRRNPETSVTQSSSAQDEPATKKKKDELDPLLTRTGGAYIPP 136


>gi|224493919 zinc finger and SCAN domain containing 18 isoform 2
           [Homo sapiens]
          Length = 374

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 53  PKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGE 93
           P+D+++D    S R    ++P  D G+ K G K      G+
Sbjct: 202 PQDAESDSATGSQRQSVIQQPAPDRGTAKLGTKRPHPEDGD 242


>gi|224493912 zinc finger and SCAN domain containing 18 isoform 3
           [Homo sapiens]
          Length = 510

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 53  PKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGE 93
           P+D+++D    S R    ++P  D G+ K G K      G+
Sbjct: 338 PQDAESDSATGSQRQSVIQQPAPDRGTAKLGTKRPHPEDGD 378


>gi|226371704 zinc finger and SCAN domain containing 18 isoform 3
           [Homo sapiens]
          Length = 510

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 53  PKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGE 93
           P+D+++D    S R    ++P  D G+ K G K      G+
Sbjct: 338 PQDAESDSATGSQRQSVIQQPAPDRGTAKLGTKRPHPEDGD 378


>gi|60097902 filaggrin [Homo sapiens]
          Length = 4061

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 17/86 (19%)

Query: 43   QSVCSEGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSGREN------------ 90
            Q+  SEG S   D+Q+    +  +AG  ++   ++   ++GE+SGR              
Sbjct: 1718 QASDSEGHSEESDTQSVS--AHGQAGPHQQSHQESTRGQSGERSGRSGSFLYQVSTHEQS 1775

Query: 91   ---RGETGASASLRVRVRARQSRGAS 113
                G TG S   R R R  Q+R +S
Sbjct: 1776 ESAHGRTGPSTGGRQRSRHEQARDSS 1801


>gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo
          sapiens]
          Length = 562

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 29 DNSSGRKPSV-PTFFQSVCSEGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSG 87
          D ++  KP++ P  F     +G   P + +   D      G AE P   TG  ++  +  
Sbjct: 3  DLANEEKPAIAPPVFVFQKDKGQKSPAEQKNLSDSGEEPRGEAEAPHHGTGHPESAGEHA 62

Query: 88 RENRGETGASAS 99
           E     GASAS
Sbjct: 63 LEPPAPAGASAS 74


>gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens]
          Length = 567

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 29 DNSSGRKPSV-PTFFQSVCSEGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSG 87
          D ++  KP++ P  F     +G   P + +   D      G AE P   TG  ++  +  
Sbjct: 3  DLANEEKPAIAPPVFVFQKDKGQKSPAEQKNLSDSGEEPRGEAEAPHHGTGHPESAGEHA 62

Query: 88 RENRGETGASAS 99
           E     GASAS
Sbjct: 63 LEPPAPAGASAS 74


>gi|118402582 cell division cycle 20 [Homo sapiens]
          Length = 499

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 51  SRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGETGASASLRVRVRARQSR 110
           ++P++SQT       +A A      D    K    SG+      G    L+V    + + 
Sbjct: 99  NQPENSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATP 158

Query: 111 GASSLCLSLTWSEPSWTLRAPLLKIS-HPNLLP----NIQSAAIQQKISLYQDSS 160
           G+S        S P   L AP ++   + NL+     N+ + A+   + L+  SS
Sbjct: 159 GSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASS 213


>gi|224493905 zinc finger and SCAN domain containing 18 isoform 1
           [Homo sapiens]
          Length = 566

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 53  PKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGE 93
           P+D+++D    S R    ++P  D G+ K G K      G+
Sbjct: 394 PQDAESDSATGSQRQSVIQQPAPDRGTAKLGTKRPHPEDGD 434


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform
           5 [Homo sapiens]
          Length = 6907

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 34  RKPSVPTFFQSVCSEGGSRPKDSQTDLDFSSSRAGAAEKPPLDTGSLKTGEKSGRENRGE 93
           +K   PTF  S    G    K+ +  ++FS+  +   E P     ++K GEK  +EN   
Sbjct: 676 KKQDQPTFDNS----GNILSKEEKATVEFSTDMS--VELPENYNQNIKAGEKHEKENEEF 729

Query: 94  TG 95
           TG
Sbjct: 730 TG 731


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.124    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,446,847
Number of Sequences: 37866
Number of extensions: 276683
Number of successful extensions: 793
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 36
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.