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Search of human proteins with 239742428
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742428 PREDICTED: hypothetical protein XP_002342513 [Homo
sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753921 PREDICTED: hypothetical protein [Homo sapiens] 372 e-104
gi|239748463 PREDICTED: hypothetical protein [Homo sapiens] 372 e-104
gi|239742428 PREDICTED: hypothetical protein XP_002342513 [Homo ... 372 e-104
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 30 1.4
gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo ... 30 1.4
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 30 1.4
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 30 1.4
gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens] 30 1.4
gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens] 30 1.4
gi|21450844 megakaryocyte-associated tyrosine kinase isoform c [... 29 1.9
gi|21450842 megakaryocyte-associated tyrosine kinase isoform b [... 29 1.9
gi|21450846 megakaryocyte-associated tyrosine kinase isoform a [... 29 1.9
gi|13489054 mitogen-activated protein kinase kinase 2 [Homo sapi... 27 7.1
gi|6274550 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9,... 27 9.2
gi|32189371 transmembrane protein 165 [Homo sapiens] 27 9.2
>gi|239753921 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 372 bits (956), Expect = e-104
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKIERNE 60
MKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKIERNE
Sbjct: 1 MKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKIERNE 60
Query: 61 LPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGAHVPDST 120
LPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGAHVPDST
Sbjct: 61 LPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGAHVPDST 120
Query: 121 LLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHYKSCKVE 178
LLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHYKSCKVE
Sbjct: 121 LLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHYKSCKVE 178
>gi|239748463 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 372 bits (956), Expect = e-104
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKIERNE 60
MKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKIERNE
Sbjct: 1 MKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKIERNE 60
Query: 61 LPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGAHVPDST 120
LPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGAHVPDST
Sbjct: 61 LPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGAHVPDST 120
Query: 121 LLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHYKSCKVE 178
LLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHYKSCKVE
Sbjct: 121 LLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHYKSCKVE 178
>gi|239742428 PREDICTED: hypothetical protein XP_002342513 [Homo
sapiens]
Length = 178
Score = 372 bits (956), Expect = e-104
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKIERNE 60
MKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKIERNE
Sbjct: 1 MKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKIERNE 60
Query: 61 LPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGAHVPDST 120
LPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGAHVPDST
Sbjct: 61 LPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGAHVPDST 120
Query: 121 LLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHYKSCKVE 178
LLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHYKSCKVE
Sbjct: 121 LLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHYKSCKVE 178
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 29.6 bits (65), Expect = 1.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 50 REDWPKIERNELPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELI 96
R+ +P E + F + PT ++++ +D+VH G+ +SE I
Sbjct: 702 RDKYPLSENHNNNTFLKHLENPPTSQRIEPRYDIVHAVGERVHSEAI 748
>gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo
sapiens]
Length = 1595
Score = 29.6 bits (65), Expect = 1.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 50 REDWPKIERNELPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELI 96
R+ +P E + F + PT ++++ +D+VH G+ +SE I
Sbjct: 702 RDKYPLSENHNNNTFLKHLENPPTSQRIEPRYDIVHAVGERVHSEAI 748
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 29 NLAELEEWMDRKKFYEIMFAKREDWPKIERNELPNFFSDCGHFPTQKQVDDTWDLVHQDG 88
N + ++E D K Y+ + E + + + S T K ++ H+D
Sbjct: 1139 NESVIKEREDLKSLYDSLIKDHEKLELLHERQASEYESLISKHGTLKSAHKNLEVEHRDL 1198
Query: 89 KEKYSELIKKSKAIEML 105
+++Y++L+K+ +E L
Sbjct: 1199 EDRYNQLLKQKGQLEDL 1215
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 29 NLAELEEWMDRKKFYEIMFAKREDWPKIERNELPNFFSDCGHFPTQKQVDDTWDLVHQDG 88
N + ++E D K Y+ + E + + + S T K ++ H+D
Sbjct: 1138 NESVIKEREDLKSLYDSLIKDHEKLELLHERQASEYESLISKHGTLKSAHKNLEVEHRDL 1197
Query: 89 KEKYSELIKKSKAIEML 105
+++Y++L+K+ +E L
Sbjct: 1198 EDRYNQLLKQKGQLEDL 1214
>gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]
Length = 610
Score = 29.6 bits (65), Expect = 1.4
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 32 ELEEWMDRKKFYEIMFAKREDWPKIERNELPNFFSDCGHFPTQKQVDDTWDLVHQDGKEK 91
E W + FYE + WP +N + S C F + D + Q+G EK
Sbjct: 279 EAAYWASMRSFYEKNPSCSRPWPPKPKNAITIALSSCALF----NMVDGRKIYEQEGLEK 334
Query: 92 YSE 94
Y E
Sbjct: 335 YME 337
>gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens]
Length = 550
Score = 29.6 bits (65), Expect = 1.4
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 32 ELEEWMDRKKFYEIMFAKREDWPKIERNELPNFFSDCGHFPTQKQVDDTWDLVHQDGKEK 91
E W + FYE + WP +N + S C F + D + Q+G EK
Sbjct: 219 EAAYWASMRSFYEKNPSCSRPWPPKPKNAITIALSSCALF----NMVDGRKIYEQEGLEK 274
Query: 92 YSE 94
Y E
Sbjct: 275 YME 277
>gi|21450844 megakaryocyte-associated tyrosine kinase isoform c
[Homo sapiens]
Length = 466
Score = 29.3 bits (64), Expect = 1.9
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 44/157 (28%)
Query: 9 GRLIHRVRYR-RGLWRTRQIL----NLAELEEWMDRKKFY------------EIMFAKRE 51
G L++ +R R R L T Q+L ++AE E+++ KK E + AK
Sbjct: 269 GNLVNFLRTRGRALVNTAQLLQFSLHVAEGMEYLESKKLVHRDLAARNILVSEDLVAKVS 328
Query: 52 DW--PKIERNELPNFFSDCGHFPTQ------------KQVDDTWDL------VHQDGKEK 91
D+ K ER L D P + D W V G+
Sbjct: 329 DFGLAKAERKGL-----DSSRLPVKWTAPEALKHGKFTSKSDVWSFGVLLWEVFSYGRAP 383
Query: 92 YSELIKK--SKAIEMLFTLYPPEGAHVPDSTLLKSTW 126
Y ++ K S+A+E + + PPEG P L+ S W
Sbjct: 384 YPKMSLKEVSEAVEKGYRMEPPEGCPGPVHVLMSSCW 420
>gi|21450842 megakaryocyte-associated tyrosine kinase isoform b
[Homo sapiens]
Length = 508
Score = 29.3 bits (64), Expect = 1.9
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 44/157 (28%)
Query: 9 GRLIHRVRYR-RGLWRTRQIL----NLAELEEWMDRKKFY------------EIMFAKRE 51
G L++ +R R R L T Q+L ++AE E+++ KK E + AK
Sbjct: 311 GNLVNFLRTRGRALVNTAQLLQFSLHVAEGMEYLESKKLVHRDLAARNILVSEDLVAKVS 370
Query: 52 DW--PKIERNELPNFFSDCGHFPTQ------------KQVDDTWDL------VHQDGKEK 91
D+ K ER L D P + D W V G+
Sbjct: 371 DFGLAKAERKGL-----DSSRLPVKWTAPEALKHGKFTSKSDVWSFGVLLWEVFSYGRAP 425
Query: 92 YSELIKK--SKAIEMLFTLYPPEGAHVPDSTLLKSTW 126
Y ++ K S+A+E + + PPEG P L+ S W
Sbjct: 426 YPKMSLKEVSEAVEKGYRMEPPEGCPGPVHVLMSSCW 462
>gi|21450846 megakaryocyte-associated tyrosine kinase isoform a
[Homo sapiens]
Length = 507
Score = 29.3 bits (64), Expect = 1.9
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 44/157 (28%)
Query: 9 GRLIHRVRYR-RGLWRTRQIL----NLAELEEWMDRKKFY------------EIMFAKRE 51
G L++ +R R R L T Q+L ++AE E+++ KK E + AK
Sbjct: 310 GNLVNFLRTRGRALVNTAQLLQFSLHVAEGMEYLESKKLVHRDLAARNILVSEDLVAKVS 369
Query: 52 DW--PKIERNELPNFFSDCGHFPTQ------------KQVDDTWDL------VHQDGKEK 91
D+ K ER L D P + D W V G+
Sbjct: 370 DFGLAKAERKGL-----DSSRLPVKWTAPEALKHGKFTSKSDVWSFGVLLWEVFSYGRAP 424
Query: 92 YSELIKK--SKAIEMLFTLYPPEGAHVPDSTLLKSTW 126
Y ++ K S+A+E + + PPEG P L+ S W
Sbjct: 425 YPKMSLKEVSEAVEKGYRMEPPEGCPGPVHVLMSSCW 461
>gi|13489054 mitogen-activated protein kinase kinase 2 [Homo
sapiens]
Length = 400
Score = 27.3 bits (59), Expect = 7.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 117 PDSTLLKSTWLRPIVNGEEGYRYIVNGHP 145
PD+ L++ + RP+V+GEEG + ++ P
Sbjct: 270 PDAKELEAIFGRPVVDGEEGEPHSISPRP 298
>gi|6274550 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9,
22kDa [Homo sapiens]
Length = 179
Score = 26.9 bits (58), Expect = 9.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 33 LEEWMDRKK-FYEIMFAKREDWPKIER 58
L++W +K Y FAKRE W K+ R
Sbjct: 104 LDDWHPSEKAMYPDYFAKREQWKKLRR 130
>gi|32189371 transmembrane protein 165 [Homo sapiens]
Length = 324
Score = 26.9 bits (58), Expect = 9.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 26 QILNLAELEEWMDRKKFYEIMFAKRED 52
Q L L L EW DR + I+ A RED
Sbjct: 239 QALTLTFLAEWGDRSQLTTIVLAARED 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,916,948
Number of Sequences: 37866
Number of extensions: 289525
Number of successful extensions: 661
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 17
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.