Guide to the Human Genome
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Name: LOC100292136 Sequence: fasta or formatted (178aa) NCBI GI: 239753921
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          8           1
 C cysteine            1.1          2           1
 D aspartate           4.5          8           2
 E glutamate           8.4         15           2
 F phenylalanine       3.4          6           2
 G glycine             5.1          9           1
 H histidine           3.4          6           1
 I isoleucine          6.2         11           1
 K lysine              9.6         17           2
 L leucine             8.4         15           2
 M methionine          3.4          6           1
 N asparagine          3.9          7           1
 P proline             4.5          8           2
 Q glutamine           2.8          5           1
 R arginine           10.1         18           2
 S serine              3.9          7           1
 T threonine           3.4          6           1
 V valine              6.2         11           2
 W tryptophan          2.8          5           1
 Y tyrosine            4.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287246          1.000   PREDICTED: hypothetical protein 
LOC100287246          1.000   PREDICTED: hypothetical protein XP_002342513 
KIAA1671              0.014   hypothetical protein LOC85379 
LOC100289134          0.014   PREDICTED: hypothetical protein XP_002343933 
CCDC88A               0.014   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.014   coiled-coil domain containing 88A isoform 1 
NT5C1B                0.014   5' nucleotidase, cytosolic IB isoform 1 
NT5C1B                0.014   5' nucleotidase, cytosolic IB isoform 2 
MATK                  0.012   megakaryocyte-associated tyrosine kinase isoform c [...
MATK                  0.012   megakaryocyte-associated tyrosine kinase isoform b [...
MATK                  0.012   megakaryocyte-associated tyrosine kinase isoform a [...
MAP2K2                0.006   mitogen-activated protein kinase kinase 2 
NDUFB9                0.006   NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9,...
TMEM165               0.006   transmembrane protein 165 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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