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Search of human proteins with 239742299
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 267 1e-72
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 267 1e-72
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 267 1e-72
gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 163 4e-41
gi|83699414 beta-defensin 130 [Homo sapiens] 163 4e-41
gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 155 1e-38
gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 155 1e-38
gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 155 1e-38
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 75 2e-14
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 75 2e-14
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 74 2e-14
gi|8923890 defensin, beta 103A precursor [Homo sapiens] 33 0.046
gi|125656159 beta-defensin 103B precursor [Homo sapiens] 33 0.046
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 32 0.10
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 32 0.10
gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo ... 31 0.23
gi|4826692 defensin, beta 4 precursor [Homo sapiens] 31 0.23
gi|4758614 integrin, beta-like 1 (with EGF-like repeat domains) ... 29 0.88
gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 28 2.0
gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens] 28 2.0
gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens] 28 2.0
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo... 28 2.0
gi|83582796 beta-defensin 113 [Homo sapiens] 28 2.6
gi|46409558 beta-defensin 32 precursor [Homo sapiens] 27 3.3
gi|11321634 CD2-associated protein [Homo sapiens] 26 7.4
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 26 7.4
gi|169234951 coiled-coil domain containing 17 [Homo sapiens] 26 7.4
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens] 26 7.4
gi|169213965 PREDICTED: similar to hCG1645909 [Homo sapiens] 26 9.7
gi|239751822 PREDICTED: similar to hCG1645909 [Homo sapiens] 26 9.7
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 267 bits (683), Expect = 1e-72
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MALLLGPIQRRKLTKASLSKRNLRPPELNKSPCVPPALITHLSIGHSTTKLHSLISVLLL 60
MALLLGPIQRRKLTKASLSKRNLRPPELNKSPCVPPALITHLSIGHSTTKLHSLISVLLL
Sbjct: 1 MALLLGPIQRRKLTKASLSKRNLRPPELNKSPCVPPALITHLSIGHSTTKLHSLISVLLL 60
Query: 61 FVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYPT 120
FVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYPT
Sbjct: 61 FVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYPT 120
Query: 121 PVPKGKSP 128
PVPKGKSP
Sbjct: 121 PVPKGKSP 128
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 267 bits (683), Expect = 1e-72
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MALLLGPIQRRKLTKASLSKRNLRPPELNKSPCVPPALITHLSIGHSTTKLHSLISVLLL 60
MALLLGPIQRRKLTKASLSKRNLRPPELNKSPCVPPALITHLSIGHSTTKLHSLISVLLL
Sbjct: 1 MALLLGPIQRRKLTKASLSKRNLRPPELNKSPCVPPALITHLSIGHSTTKLHSLISVLLL 60
Query: 61 FVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYPT 120
FVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYPT
Sbjct: 61 FVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYPT 120
Query: 121 PVPKGKSP 128
PVPKGKSP
Sbjct: 121 PVPKGKSP 128
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 267 bits (683), Expect = 1e-72
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MALLLGPIQRRKLTKASLSKRNLRPPELNKSPCVPPALITHLSIGHSTTKLHSLISVLLL 60
MALLLGPIQRRKLTKASLSKRNLRPPELNKSPCVPPALITHLSIGHSTTKLHSLISVLLL
Sbjct: 1 MALLLGPIQRRKLTKASLSKRNLRPPELNKSPCVPPALITHLSIGHSTTKLHSLISVLLL 60
Query: 61 FVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYPT 120
FVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYPT
Sbjct: 61 FVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYPT 120
Query: 121 PVPKGKSP 128
PVPKGKSP
Sbjct: 121 PVPKGKSP 128
>gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 79
Score = 163 bits (412), Expect = 4e-41
Identities = 77/79 (97%), Positives = 77/79 (97%), Gaps = 1/79 (1%)
Query: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC
Sbjct: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 110 RRWWILEPYPTPVPKGKSP 128
RRWWILEPYPTPVPKGKSP
Sbjct: 61 RRWWILEPYPTPVPKGKSP 79
>gi|83699414 beta-defensin 130 [Homo sapiens]
Length = 79
Score = 163 bits (412), Expect = 4e-41
Identities = 77/79 (97%), Positives = 77/79 (97%), Gaps = 1/79 (1%)
Query: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC
Sbjct: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 110 RRWWILEPYPTPVPKGKSP 128
RRWWILEPYPTPVPKGKSP
Sbjct: 61 RRWWILEPYPTPVPKGKSP 79
>gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 78
Score = 155 bits (391), Expect = 1e-38
Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%)
Query: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 110 RRWWILEPYPTPVPKGKSP 128
RRWWILEPYPTPVPKGKSP
Sbjct: 60 RRWWILEPYPTPVPKGKSP 78
>gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 78
Score = 155 bits (391), Expect = 1e-38
Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%)
Query: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 110 RRWWILEPYPTPVPKGKSP 128
RRWWILEPYPTPVPKGKSP
Sbjct: 60 RRWWILEPYPTPVPKGKSP 78
>gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 78
Score = 155 bits (391), Expect = 1e-38
Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%)
Query: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 110 RRWWILEPYPTPVPKGKSP 128
RRWWILEPYPTPVPKGKSP
Sbjct: 60 RRWWILEPYPTPVPKGKSP 78
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 74.7 bits (182), Expect = 2e-14
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 47 STTKLHSLISVLLLFVTLIPKAKMTGVI-PGQKQCIALKGVCRDKLCSTLDDTIGICNEG 105
+ +LH L+ +LLLF L+ + G + P + C++L GVCR +C ++D IG C
Sbjct: 62 AAVRLHVLLLILLLFSILLSPVR--GALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRR 119
Query: 106 KKCCRRWWILEPYPTPV 122
KCCR WWIL P PTP+
Sbjct: 120 MKCCRAWWILMPIPTPL 136
>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
Length = 87
Score = 74.7 bits (182), Expect = 2e-14
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C KCC
Sbjct: 2 RLHLLLLILLLFSILLSPVR-GGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
Query: 110 RRWWILEPYPTPV 122
R WWIL P PTP+
Sbjct: 61 RAWWILMPIPTPL 73
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 74.3 bits (181), Expect = 2e-14
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C KCC
Sbjct: 2 RLHLLLLILLFSILLSPGNK-GGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
Query: 110 RRWWILEPYPTPV 122
R WWIL P PTP+
Sbjct: 61 RAWWILMPIPTPL 73
>gi|8923890 defensin, beta 103A precursor [Homo sapiens]
Length = 67
Score = 33.5 bits (75), Expect = 0.046
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQ--CIALKGVCRDKLCSTLDDTIGICN-EGK 106
++H L+ LL F+ L+P G+I ++ C G C C ++ IG C+ G+
Sbjct: 2 RIHYLLFALL-FLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 107 KCCRR 111
KCCRR
Sbjct: 61 KCCRR 65
>gi|125656159 beta-defensin 103B precursor [Homo sapiens]
Length = 67
Score = 33.5 bits (75), Expect = 0.046
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQ--CIALKGVCRDKLCSTLDDTIGICN-EGK 106
++H L+ LL F+ L+P G+I ++ C G C C ++ IG C+ G+
Sbjct: 2 RIHYLLFALL-FLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 107 KCCRR 111
KCCRR
Sbjct: 61 KCCRR 65
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 32.3 bits (72), Expect = 0.10
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 78 KQCIALKGVCRDKLCSTLDDTIGICNEGKKCCR 110
++C LKG C++ C ++ I +C + KCCR
Sbjct: 24 EKCNKLKGTCKNN-CGKNEELIALCQKSLKCCR 55
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 32.3 bits (72), Expect = 0.10
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 78 KQCIALKGVCRDKLCSTLDDTIGICNEGKKCCR 110
++C LKG C++ C ++ I +C + KCCR
Sbjct: 24 EKCNKLKGTCKNN-CGKNEELIALCQKSLKCCR 55
>gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo
sapiens]
Length = 64
Score = 31.2 bits (69), Expect = 0.23
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 60 LFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICN-EGKKCCRR 111
LF+ L+P + G I C+ +C C IG C G KCC++
Sbjct: 11 LFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCKK 63
>gi|4826692 defensin, beta 4 precursor [Homo sapiens]
Length = 64
Score = 31.2 bits (69), Expect = 0.23
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 60 LFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICN-EGKKCCRR 111
LF+ L+P + G I C+ +C C IG C G KCC++
Sbjct: 11 LFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCKK 63
>gi|4758614 integrin, beta-like 1 (with EGF-like repeat domains)
[Homo sapiens]
Length = 494
Score = 29.3 bits (64), Expect = 0.88
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 69 KMTGVIPGQKQCIALKGVCRDKLCSTLDDTI----GICNEGKKCCRRWW 113
K T PG ++ C D+ C LD + G C+ G+ C R W
Sbjct: 345 KCTCYPPGDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGW 393
>gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 28.1 bits (61), Expect = 2.0
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 70 MTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
++ V QK C +KG CR K C + C G CC
Sbjct: 8 LSSVCRSQKSCWIIKGHCR-KNCKPGEQVKKPCKNGDYCC 46
>gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 28.1 bits (61), Expect = 2.0
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 70 MTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
++ V QK C +KG CR K C + C G CC
Sbjct: 8 LSSVCRSQKSCWIIKGHCR-KNCKPGEQVKKPCKNGDYCC 46
>gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 28.1 bits (61), Expect = 2.0
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 70 MTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
++ V QK C +KG CR K C + C G CC
Sbjct: 8 LSSVCRSQKSCWIIKGHCR-KNCKPGEQVKKPCKNGDYCC 46
>gi|110825974 ADAM metallopeptidase with thrombospondin type 1 motif,
2 isoform 1 preproprotein [Homo sapiens]
Length = 1211
Score = 28.1 bits (61), Expect = 2.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 88 RDKLCSTLDDTIGICNEGKKCCRRWWILEPYPTPV--PKGKS 127
R LC T DD+ GIC E + R L P P + P KS
Sbjct: 998 RPVLCRTADDSFGICQEERPETARTCRLGPCPRNISDPSKKS 1039
>gi|83582796 beta-defensin 113 [Homo sapiens]
Length = 82
Score = 27.7 bits (60), Expect = 2.6
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 55 ISVLLLFVTLI---------PKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEG 105
+ +L +F+T + P+ K V +++C ++G C+ + C++ + CN
Sbjct: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPE-CNSWEYVYYYCNV- 58
Query: 106 KKCCRRWWILEP 117
CC W +P
Sbjct: 59 NPCCAVWEYQKP 70
>gi|46409558 beta-defensin 32 precursor [Homo sapiens]
Length = 95
Score = 27.3 bits (59), Expect = 3.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 60 LFVTLIPKAKMTGVIP---GQKQCIA-LKGVCRDKLCSTLDDTIGICNEGKKCC 109
L + L +T VIP G +C++ G CR C + + +CN +KCC
Sbjct: 4 LLLVLAALGFLTQVIPASAGGSKCVSNTPGYCRT-CCHWGETALFMCNASRKCC 56
>gi|11321634 CD2-associated protein [Homo sapiens]
Length = 639
Score = 26.2 bits (56), Expect = 7.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 22 NLRPPELNKSPCVPPALITHLSIGHSTTKLHS 53
NL+P EL K C P +LS S +K ++
Sbjct: 529 NLKPSELKKDTCYSPKPSVYLSTPSSASKANT 560
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 26.2 bits (56), Expect = 7.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 109 CRRWWILEPYPTPVPKG 125
CR W+L P P P P G
Sbjct: 229 CRSRWVLAPPPPPAPPG 245
>gi|169234951 coiled-coil domain containing 17 [Homo sapiens]
Length = 590
Score = 26.2 bits (56), Expect = 7.4
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 5 LGPIQRRKLTKASLSKRNLRPPELNKSPCVPP 36
LGP R L ASL + R P L P PP
Sbjct: 290 LGPQDLRLLGDASLQPKGRRDPPLLPPPVAPP 321
>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
Length = 4116
Score = 26.2 bits (56), Expect = 7.4
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 88 RDKLCSTLDDTIGICNEGKKCCRRWWIL---------EPYPTPVPK 124
+DKL +L TIGI + K+ W PYP P P+
Sbjct: 3368 KDKLLFSLLLTIGIMKQKKEITEEVWYFLLTGGIALDNPYPNPAPQ 3413
>gi|169213965 PREDICTED: similar to hCG1645909 [Homo sapiens]
Length = 591
Score = 25.8 bits (55), Expect = 9.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 11 RKLTKASLSKRNLRPPELNKSPCVP 35
+K TK +++ ++P E K PC P
Sbjct: 466 KKATKGQVARAPVKPKEKKKGPCPP 490
>gi|239751822 PREDICTED: similar to hCG1645909 [Homo sapiens]
Length = 591
Score = 25.8 bits (55), Expect = 9.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 11 RKLTKASLSKRNLRPPELNKSPCVP 35
+K TK +++ ++P E K PC P
Sbjct: 466 KKATKGQVARAPVKPKEKKKGPCPP 490
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,934,951
Number of Sequences: 37866
Number of extensions: 259154
Number of successful extensions: 602
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 32
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.