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Search of human proteins with 239741679
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741679 PREDICTED: hypothetical protein XP_002342286 [Homo
sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753238 PREDICTED: hypothetical protein XP_002345592 [Homo ... 246 2e-66
gi|239747805 PREDICTED: hypothetical protein XP_002348318 [Homo ... 246 2e-66
gi|239741679 PREDICTED: hypothetical protein XP_002342286 [Homo ... 246 2e-66
gi|118498337 HECT domain containing 1 [Homo sapiens] 31 0.26
gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sap... 29 0.76
gi|189339239 hypothetical protein LOC55009 [Homo sapiens] 29 0.76
gi|110349786 Alstrom syndrome 1 [Homo sapiens] 28 1.7
gi|46370084 transcription factor 12 isoform b [Homo sapiens] 28 1.7
gi|46370082 transcription factor 12 isoform a [Homo sapiens] 28 1.7
gi|46370080 transcription factor 12 isoform a [Homo sapiens] 28 1.7
gi|4507391 transcription factor 12 isoform b [Homo sapiens] 28 1.7
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 28 2.2
gi|4758422 glucosaminyl (N-acetyl) transferase 3, mucin type [Ho... 27 3.8
gi|149408122 RNA helicase LGP2 [Homo sapiens] 27 3.8
gi|59710104 plexin A3 [Homo sapiens] 27 4.9
gi|4507399 transcription factor 4 isoform b [Homo sapiens] 26 6.5
gi|145312267 transcription factor 4 isoform a [Homo sapiens] 26 6.5
gi|9506931 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens] 26 6.5
gi|5031805 insulin receptor substrate 1 [Homo sapiens] 26 8.4
gi|148596992 heart alpha-kinase [Homo sapiens] 26 8.4
gi|13236559 hypothetical protein LOC79169 [Homo sapiens] 26 8.4
>gi|239753238 PREDICTED: hypothetical protein XP_002345592 [Homo
sapiens]
Length = 122
Score = 246 bits (629), Expect = 2e-66
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MSGQEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHV 60
MSGQEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHV
Sbjct: 1 MSGQEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHV 60
Query: 61 LQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHL 120
LQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHL
Sbjct: 61 LQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHL 120
Query: 121 TQ 122
TQ
Sbjct: 121 TQ 122
>gi|239747805 PREDICTED: hypothetical protein XP_002348318 [Homo
sapiens]
Length = 122
Score = 246 bits (629), Expect = 2e-66
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MSGQEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHV 60
MSGQEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHV
Sbjct: 1 MSGQEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHV 60
Query: 61 LQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHL 120
LQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHL
Sbjct: 61 LQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHL 120
Query: 121 TQ 122
TQ
Sbjct: 121 TQ 122
>gi|239741679 PREDICTED: hypothetical protein XP_002342286 [Homo
sapiens]
Length = 122
Score = 246 bits (629), Expect = 2e-66
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MSGQEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHV 60
MSGQEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHV
Sbjct: 1 MSGQEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHV 60
Query: 61 LQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHL 120
LQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHL
Sbjct: 61 LQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHL 120
Query: 121 TQ 122
TQ
Sbjct: 121 TQ 122
>gi|118498337 HECT domain containing 1 [Homo sapiens]
Length = 2610
Score = 30.8 bits (68), Expect = 0.26
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 53 LDDLLDHVLQGDQAQDLVEGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPG 102
L D ++ LQGD+ L + L++ LL +G+ LP +A S G PG
Sbjct: 302 LPDSIESALQGDERCVLDTMRLVDLLLVLLFEGRKALPKSSAGSTGRIPG 351
>gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sapiens]
Length = 2961
Score = 29.3 bits (64), Expect = 0.76
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 24 EVTLVLL-RHPLPASVAGLTVHVGLVQDL-------RLDDLLDHVLQGDQAQDLVEGVTL 75
E T VL RH L + +A HV + +D+ + +LD +Q ++ + + L
Sbjct: 2612 EATAVLYARHVLASLLAEWPSHVPVSEDILELSGPAHMTYILDMFMQLEEKHEWEK--IL 2669
Query: 76 TLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHP 113
V+ + +G + AA E+PG Q R+S HP
Sbjct: 2670 QKVLQGCREDMLGTMALAACQFMEEPGMEVQVRESKHP 2707
>gi|189339239 hypothetical protein LOC55009 [Homo sapiens]
Length = 132
Score = 29.3 bits (64), Expect = 0.76
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 82 LHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHLTQ 122
L QV L P A ++G +PGAP + + P S LT+
Sbjct: 32 LRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASGSALTR 72
>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
Length = 4169
Score = 28.1 bits (61), Expect = 1.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 84 DGQVGLPSP--AAFSHGEKPGA-PEQTRDSHHPRRSPLHLT 121
D + G P+P A++SH EKPG +Q +HP L ++
Sbjct: 1227 DQKTGTPTPTSASYSHTEKPGIFYQQVLPDNHPTEEALKIS 1267
>gi|46370084 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 87 VGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLH 119
+GL SPA S KPG + + RR PLH
Sbjct: 138 LGLGSPAQLSSSGKPGTAYYSFSATSSRRRPLH 170
>gi|46370082 transcription factor 12 isoform a [Homo sapiens]
Length = 706
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 87 VGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLH 119
+GL SPA S KPG + + RR PLH
Sbjct: 138 LGLGSPAQLSSSGKPGTAYYSFSATSSRRRPLH 170
>gi|46370080 transcription factor 12 isoform a [Homo sapiens]
Length = 706
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 87 VGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLH 119
+GL SPA S KPG + + RR PLH
Sbjct: 138 LGLGSPAQLSSSGKPGTAYYSFSATSSRRRPLH 170
>gi|4507391 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 87 VGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLH 119
+GL SPA S KPG + + RR PLH
Sbjct: 138 LGLGSPAQLSSSGKPGTAYYSFSATSSRRRPLH 170
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 27.7 bits (60), Expect = 2.2
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 30 LRHPLPASVAGLTVHVGLVQDLRLDDLLDHVLQGDQAQDLVEGVTLTLVV-YLLHDGQVG 88
L PLP S A + + +Q L+ D L HV+ Q+ EG+ L L++ ++L G
Sbjct: 2667 LSPPLPFSTAVVRLVALQIQALKEDFPLSHVISPFTNQERREGMLLNLLIPFVLTVGSGS 2726
Query: 89 LPSP 92
SP
Sbjct: 2727 KDSP 2730
>gi|4758422 glucosaminyl (N-acetyl) transferase 3, mucin type [Homo
sapiens]
Length = 438
Score = 26.9 bits (58), Expect = 3.8
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 5 EELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQDLRLDDLLDHVLQGD 64
+E R +HFE++ TL L LT+ G + D + HVL+
Sbjct: 261 KETRWKYHFEVV-------RDTLHLTNKKKDPPPYNLTMFTGNAYIVASRDFVQHVLKNP 313
Query: 65 QAQDLVEGV 73
++Q L+E V
Sbjct: 314 KSQQLIEWV 322
>gi|149408122 RNA helicase LGP2 [Homo sapiens]
Length = 678
Score = 26.9 bits (58), Expect = 3.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 12 HFELIVRILEGREVTLVLLR-HPLPASVAGLTVHVGLVQDLRLDDLLDHVLQ 62
H + + ++ + + L L R PLP V GLT G +LD ++HVLQ
Sbjct: 137 HKDTVYNVIMSQYLELKLQRAQPLP-QVLGLTASPGTGGASKLDGAINHVLQ 187
>gi|59710104 plexin A3 [Homo sapiens]
Length = 1871
Score = 26.6 bits (57), Expect = 4.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 27 LVLLRHPLPASVAGLTVHVGLVQDLRLDDLL---------DHVLQGDQAQDLVEGV 73
L+L+ + VA ++ G+ Q LRLDDL +H L G Q D + GV
Sbjct: 99 LLLIDYAARRLVACGSIWQGICQFLRLDDLFKLGEPHHRKEHYLSGAQEPDSMAGV 154
>gi|4507399 transcription factor 4 isoform b [Homo sapiens]
Length = 667
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 85 GQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLH 119
G + + +P S KPG+ S++PRR PLH
Sbjct: 129 GDMDMGNPGTLSP-TKPGSQYYQYSSNNPRRRPLH 162
>gi|145312267 transcription factor 4 isoform a [Homo sapiens]
Length = 671
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 85 GQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLH 119
G + + +P S KPG+ S++PRR PLH
Sbjct: 129 GDMDMGNPGTLSP-TKPGSQYYQYSSNNPRRRPLH 162
>gi|9506931 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.5
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 4 QEELRGDFHFELIVRILEGREVTLVLLRHPLPASVAGLTVHVGLVQD 50
+EEL H E + E L LLRH LP A + H+G V D
Sbjct: 451 KEEL---LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPD 494
>gi|5031805 insulin receptor substrate 1 [Homo sapiens]
Length = 1242
Score = 25.8 bits (55), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 92 PAAFSHGEKPGAPEQTRDSHHPRRS 116
P +F H ++PG PE+ H R S
Sbjct: 768 PRSFKHTQRPGEPEEGARHQHLRLS 792
>gi|148596992 heart alpha-kinase [Homo sapiens]
Length = 2170
Score = 25.8 bits (55), Expect = 8.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 85 GQVGLPSPAAFSHGEKPGAPEQTRDSHHPR 114
G+ LP+ + + PG +TRDSH R
Sbjct: 447 GRYKLPTAPEAAENDYPGIQGETRDSHQAR 476
>gi|13236559 hypothetical protein LOC79169 [Homo sapiens]
Length = 263
Score = 25.8 bits (55), Expect = 8.4
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 71 EGVTLTLVVYLLHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRR 115
E L L V+ H + G P +A S KP A +QT S R
Sbjct: 139 EAAKLGLSVFTHHRVESGGPGTSAASARRKPRAEDQTESSCESHR 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,295,152
Number of Sequences: 37866
Number of extensions: 231899
Number of successful extensions: 661
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 23
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.