Guide to the Human Genome
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Name: LOC100290762 Sequence: fasta or formatted (122aa) NCBI GI: 239747805
Description:

PREDICTED: hypothetical protein XP_002348318

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          6           2
 C cysteine            0.0          0           0
 D aspartate           7.4          9           2
 E glutamate           6.6          8           2
 F phenylalanine       2.5          3           1
 G glycine             9.0         11           1
 H histidine           7.4          9           2
 I isoleucine          1.6          2           1
 K lysine              0.8          1           1
 L leucine            18.0         22           2
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline             6.6          8           1
 Q glutamine           6.6          8           1
 R arginine            6.6          8           2
 S serine              4.9          6           1
 T threonine           4.9          6           1
 V valine             10.7         13           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348318 
LOC100291787          1.000   PREDICTED: hypothetical protein XP_002345592 
LOC100288569          1.000   PREDICTED: hypothetical protein XP_002342286 
HECTD1                0.027   HECT domain containing 1 
ZZEF1                 0.018   zinc finger, ZZ type with EF hand domain 1 
C19orf24              0.018   hypothetical protein LOC55009 
ALMS1                 0.014   Alstrom syndrome 1 
TCF12                 0.014   transcription factor 12 isoform b 
TCF12                 0.014   transcription factor 12 isoform a 
TCF12                 0.014   transcription factor 12 isoform a 
TCF12                 0.014   transcription factor 12 isoform b 
C2orf21               0.014   chromosome 2 open reading frame 21 isoform 1 
GCNT3                 0.009   glucosaminyl (N-acetyl) transferase 3, mucin type [Ho...
DHX58                 0.009   RNA helicase LGP2 
PLXNA3                0.009   plexin A3 
TCF4                  0.005   transcription factor 4 isoform b 
TCF4                  0.005   transcription factor 4 isoform a 
DDX56                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 
IRS1                  0.005   insulin receptor substrate 1 
ALPK2                 0.005   heart alpha-kinase 
C1orf35               0.005   hypothetical protein LOC79169 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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