Search of human proteins with 239741221

Search of human proteins with 239741221

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741221 PREDICTED: hypothetical protein [Homo sapiens]
         (134 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747395 PREDICTED: hypothetical protein [Homo sapiens]           287   2e-78
gi|239741221 PREDICTED: hypothetical protein [Homo sapiens]           287   2e-78
gi|239752818 PREDICTED: hypothetical protein [Homo sapiens]           152   1e-37
gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]            37   0.004
gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]            37   0.004
gi|113418864 PREDICTED: hypothetical protein [Homo sapiens]            37   0.004
gi|239509076 PREDICTED: hypothetical protein [Homo sapiens]            37   0.004
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]    30   0.44 
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]    30   0.44 
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]    30   0.44 
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]    30   0.44 
gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2...    30   0.58 
gi|110431336 zinc finger and SCAN domain containing 1 [Homo sapi...    30   0.76 
gi|223633939 solute carrier family 39 (zinc transporter), member...    29   0.99 
gi|223633937 solute carrier family 39 (zinc transporter), member...    29   0.99 
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]            29   0.99 
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]            29   0.99 
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ...    29   0.99 
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]            29   0.99 
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ...    29   0.99 
gi|154354983 regulating synaptic membrane exocytosis 2 isoform a...    29   0.99 
gi|154354981 regulating synaptic membrane exocytosis 2 isoform b...    29   0.99 
gi|239753247 PREDICTED: hypothetical protein XP_002345596 [Homo ...    28   2.2  
gi|239747840 PREDICTED: hypothetical protein XP_002348327 [Homo ...    28   2.2  
gi|239741706 PREDICTED: hypothetical protein XP_002342278 [Homo ...    28   2.2  
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             28   2.2  
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    28   2.9  
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    28   2.9  
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    28   2.9  
gi|33188461 GATA binding protein 4 [Homo sapiens]                      28   2.9  

>gi|239747395 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 134

 Score =  287 bits (734), Expect = 2e-78
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 1   MGSLPYHNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFS 60
           MGSLPYHNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFS
Sbjct: 1   MGSLPYHNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFS 60

Query: 61  LEKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGA 120
           LEKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGA
Sbjct: 61  LEKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGA 120

Query: 121 LGRRGWEGAARDAT 134
           LGRRGWEGAARDAT
Sbjct: 121 LGRRGWEGAARDAT 134


>gi|239741221 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 134

 Score =  287 bits (734), Expect = 2e-78
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 1   MGSLPYHNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFS 60
           MGSLPYHNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFS
Sbjct: 1   MGSLPYHNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFS 60

Query: 61  LEKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGA 120
           LEKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGA
Sbjct: 61  LEKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGA 120

Query: 121 LGRRGWEGAARDAT 134
           LGRRGWEGAARDAT
Sbjct: 121 LGRRGWEGAARDAT 134


>gi|239752818 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 181

 Score =  152 bits (383), Expect = 1e-37
 Identities = 88/132 (66%), Positives = 93/132 (70%), Gaps = 10/132 (7%)

Query: 3   SLPYHNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLE 62
           S  Y +R P    P+ S P  S  +     G+   C A+  S   PRL     F    L 
Sbjct: 60  SQTYWSRGPLP--PQRSTPMASPARR----GQFPACYAKSPSAA-PRLGG---FFRKRLG 109

Query: 63  KSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALG 122
            SEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALG
Sbjct: 110 GSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALG 169

Query: 123 RRGWEGAARDAT 134
           RRGWEGAARDAT
Sbjct: 170 RRGWEGAARDAT 181


>gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 25/112 (22%)

Query: 10  APRARDP-----RHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKS 64
           AP AR P      H P P +   G ++F  PG         C P   A RD        S
Sbjct: 74  APEARPPFLAGYEHQPRPRAATPGFLSFRSPGAA----VPSCFPTAAAHRDLGEPGRGPS 129

Query: 65  EEAEDGPESRSAPPWSH------TPRSPRRIGVLSLWPGAPRATFARAAENL 110
                GP      P +H       PRSPRR          PR + A A E L
Sbjct: 130 PSQASGPSRSPRVPPAHPELSGSRPRSPRR----------PRGSIAAAREAL 171


>gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 25/112 (22%)

Query: 10  APRARDP-----RHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKS 64
           AP AR P      H P P +   G ++F  PG         C P   A RD        S
Sbjct: 74  APEARPPFLAGYEHQPRPRAATPGFLSFRSPGAA----VPSCFPTAAAHRDLGEPGRGPS 129

Query: 65  EEAEDGPESRSAPPWSH------TPRSPRRIGVLSLWPGAPRATFARAAENL 110
                GP      P +H       PRSPRR          PR + A A E L
Sbjct: 130 PSQASGPSRSPRVPPAHPELSGSRPRSPRR----------PRGSIAAAREAL 171


>gi|113418864 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 25/112 (22%)

Query: 10  APRARDP-----RHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKS 64
           AP AR P      H P P +   G ++F  PG         C P   A RD        S
Sbjct: 74  APEARPPFLAGYEHQPRPRAATPGFLSFRSPGAA----VPSCFPTAAAHRDLGEPGRGPS 129

Query: 65  EEAEDGPESRSAPPWSH------TPRSPRRIGVLSLWPGAPRATFARAAENL 110
                GP      P +H       PRSPRR          PR + A A E L
Sbjct: 130 PSQASGPSRSPRVPPAHPELSGSRPRSPRR----------PRGSIAAAREAL 171


>gi|239509076 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 25/112 (22%)

Query: 10  APRARDP-----RHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKS 64
           AP AR P      H P P +   G ++F  PG         C P   A RD        S
Sbjct: 74  APEARPPFLAGYEHQPRPRAATPGFLSFRSPGAA----VPSCFPTAAAHRDLGEPGRGPS 129

Query: 65  EEAEDGPESRSAPPWSH------TPRSPRRIGVLSLWPGAPRATFARAAENL 110
                GP      P +H       PRSPRR          PR + A A E L
Sbjct: 130 PSQASGPSRSPRVPPAHPELSGSRPRSPRR----------PRGSIAAAREAL 171


>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
          Length = 1031

 Score = 30.4 bits (67), Expect = 0.44
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 15  DPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKSEEAEDGPESR 74
           DP HS PPT+L +       PG C A   +        W+D E+    ++  A   P   
Sbjct: 466 DPVHSTPPTTLMEPHRI--NPGECLATSEA-------TWKDTEH---SRNSSASRSPSLA 513

Query: 75  SAPPWSHTPR--SPRRIGVLS 93
            +PP +  P     R +GVLS
Sbjct: 514 LSPPPALAPELLRVRSMGVLS 534


>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
          Length = 1006

 Score = 30.4 bits (67), Expect = 0.44
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 15  DPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKSEEAEDGPESR 74
           DP HS PPT+L +       PG C A   +        W+D E+    ++  A   P   
Sbjct: 441 DPVHSTPPTTLMEPHRI--NPGECLATSEA-------TWKDTEH---SRNSSASRSPSLA 488

Query: 75  SAPPWSHTPR--SPRRIGVLS 93
            +PP +  P     R +GVLS
Sbjct: 489 LSPPPALAPELLRVRSMGVLS 509


>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
          Length = 1044

 Score = 30.4 bits (67), Expect = 0.44
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 15  DPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKSEEAEDGPESR 74
           DP HS PPT+L +       PG C A   +        W+D E+    ++  A   P   
Sbjct: 479 DPVHSTPPTTLMEPHRI--NPGECLATSEA-------TWKDTEH---SRNSSASRSPSLA 526

Query: 75  SAPPWSHTPR--SPRRIGVLS 93
            +PP +  P     R +GVLS
Sbjct: 527 LSPPPALAPELLRVRSMGVLS 547


>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
          Length = 1079

 Score = 30.4 bits (67), Expect = 0.44
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 15  DPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKSEEAEDGPESR 74
           DP HS PPT+L +       PG C A   +        W+D E+    ++  A   P   
Sbjct: 514 DPVHSTPPTTLMEPHRI--NPGECLATSEA-------TWKDTEH---SRNSSASRSPSLA 561

Query: 75  SAPPWSHTPR--SPRRIGVLS 93
            +PP +  P     R +GVLS
Sbjct: 562 LSPPPALAPELLRVRSMGVLS 582


>gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2
           [Homo sapiens]
          Length = 682

 Score = 30.0 bits (66), Expect = 0.58
 Identities = 28/100 (28%), Positives = 33/100 (33%), Gaps = 26/100 (26%)

Query: 15  DPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKSEEAEDGPESR 74
           DPR  P P  L          G+   + A CC  R    R     + E S  +  G    
Sbjct: 479 DPRPGPCPPEL----------GLGLGQLACCCLHRRAKRRP--PMTQENSYVSSTGRAHS 526

Query: 75  SAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGP 114
            A PW                  AP    A+AAE L RGP
Sbjct: 527 GAAPWQPL--------------AAPSGASAQAAEQLQRGP 552


>gi|110431336 zinc finger and SCAN domain containing 1 [Homo
           sapiens]
          Length = 408

 Score = 29.6 bits (65), Expect = 0.76
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 5   PYHNRAPRARDPRHSPPPTSLKQGEVAFGEP 35
           P   +APR++ PR S PP    QG VA   P
Sbjct: 346 PPRKKAPRSKGPRESVPPRDGAQGPVAPRSP 376


>gi|223633939 solute carrier family 39 (zinc transporter), member 12
           isoform 1 [Homo sapiens]
          Length = 691

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 50  LTAWRDFENFSLEKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPG 97
           +T  +D+ NFS    +E+EDGP S     W  T  S R++  + L  G
Sbjct: 282 ITHDQDYSNFSSSMEKESEDGPVS-----WDQTCFSARQLVEIFLQKG 324


>gi|223633937 solute carrier family 39 (zinc transporter), member 12
           isoform 2 [Homo sapiens]
          Length = 654

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 50  LTAWRDFENFSLEKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPG 97
           +T  +D+ NFS    +E+EDGP S     W  T  S R++  + L  G
Sbjct: 282 ITHDQDYSNFSSSMEKESEDGPVS-----WDQTCFSARQLVEIFLQKG 324


>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 329

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 10  APRARDPRHSPPPTSLKQG------EVAFGEPGICTARFASCCCPRLTAWRDFENFSLEK 63
           AP  RDP    PP S ++G      +     PG C A+ A  C P  T  +         
Sbjct: 62  APSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPC-AQPAGTCPPPPTGEKQPRPHGFRC 120

Query: 64  SEEAEDGPESRSAP---PWSHTPRSPR 87
           S  ++  P    AP   P +H P  PR
Sbjct: 121 SHGSKRAPALLGAPARRPPAHIPAQPR 147


>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 329

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 10  APRARDPRHSPPPTSLKQG------EVAFGEPGICTARFASCCCPRLTAWRDFENFSLEK 63
           AP  RDP    PP S ++G      +     PG C A+ A  C P  T  +         
Sbjct: 62  APSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPC-AQPAGTCPPPPTGEKQPRPHGFRC 120

Query: 64  SEEAEDGPESRSAP---PWSHTPRSPR 87
           S  ++  P    AP   P +H P  PR
Sbjct: 121 SHGSKRAPALLGAPARRPPAHIPAQPR 147


>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
           sapiens]
          Length = 261

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 24/61 (39%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 64  SEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGR 123
           S  A  GP S SA P SH P SP         PG    T  R     S G A  G   GR
Sbjct: 207 SMRAGPGPSSPSAAPTSHPPPSP-------ACPGPEMETILRNPPARSPG-AGWGSGAGR 258

Query: 124 R 124
           R
Sbjct: 259 R 259


>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 329

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 10  APRARDPRHSPPPTSLKQG------EVAFGEPGICTARFASCCCPRLTAWRDFENFSLEK 63
           AP  RDP    PP S ++G      +     PG C A+ A  C P  T  +         
Sbjct: 62  APSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPC-AQPAGTCPPPPTGEKQPRPHGFRC 120

Query: 64  SEEAEDGPESRSAP---PWSHTPRSPR 87
           S  ++  P    AP   P +H P  PR
Sbjct: 121 SHGSKRAPALLGAPARRPPAHIPAQPR 147


>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
           sapiens]
          Length = 261

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 24/61 (39%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 64  SEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGR 123
           S  A  GP S SA P SH P SP         PG    T  R     S G A  G   GR
Sbjct: 207 SMRAGPGPSSPSAAPTSHPPPSP-------ACPGPEMETILRNPPARSPG-AGWGSGAGR 258

Query: 124 R 124
           R
Sbjct: 259 R 259


>gi|154354983 regulating synaptic membrane exocytosis 2 isoform a
           [Homo sapiens]
          Length = 1349

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 49  RLTAWRDFENFSLEKSEEAEDGPESRSAPPWSHTPRSPRR 88
           R  A  +  ++S+E++ EA+ GP S +    +H+P +PRR
Sbjct: 400 RRAAMENQRSYSMERTREAQ-GPSSYAQRTTNHSPPTPRR 438


>gi|154354981 regulating synaptic membrane exocytosis 2 isoform b
           [Homo sapiens]
          Length = 1163

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 49  RLTAWRDFENFSLEKSEEAEDGPESRSAPPWSHTPRSPRR 88
           R  A  +  ++S+E++ EA+ GP S +    +H+P +PRR
Sbjct: 208 RRAAMENQRSYSMERTREAQ-GPSSYAQRTTNHSPPTPRR 246


>gi|239753247 PREDICTED: hypothetical protein XP_002345596 [Homo
           sapiens]
          Length = 173

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 74  RSAPPWSHTPRSPR-RIGV-LSLWPGAPRATFARAAENLSRGP 114
           R+ PP SH+P S R R G+ L LW      + AR  E LS  P
Sbjct: 3   RTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYP 45


>gi|239747840 PREDICTED: hypothetical protein XP_002348327 [Homo
           sapiens]
          Length = 173

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 74  RSAPPWSHTPRSPR-RIGV-LSLWPGAPRATFARAAENLSRGP 114
           R+ PP SH+P S R R G+ L LW      + AR  E LS  P
Sbjct: 3   RTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYP 45


>gi|239741706 PREDICTED: hypothetical protein XP_002342278 [Homo
           sapiens]
          Length = 173

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 74  RSAPPWSHTPRSPR-RIGV-LSLWPGAPRATFARAAENLSRGP 114
           R+ PP SH+P S R R G+ L LW      + AR  E LS  P
Sbjct: 3   RTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYP 45


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 7   HNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCC-PRLTAWRDFENFSLEKSE 65
           H +  + R PR  P  TS   G  A G  G    + +S    P   +W    + S  +S 
Sbjct: 454 HGKRAKERPPRARPASTSPSPG--AHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR 511

Query: 66  EAEDGPESRSAPPWSHTPRSPRRIG 90
            AE  P S S  P    P S  + G
Sbjct: 512 SAEKRPHSPSRSPSPKKPLSRDKDG 536


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 62   EKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGA--------PRATFARAAENLSRG 113
            EK E  + GP     PP    P+ P         PG+         +     A      G
Sbjct: 1220 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPG 1279

Query: 114  PASVGGALGRRGWEGAA 130
             A VGG  G RG +G A
Sbjct: 1280 EAGVGGPKGERGEKGEA 1296



 Score = 27.7 bits (60), Expect = 2.9
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 19/69 (27%)

Query: 65   EEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGRR 124
            ++ EDG   +  PP       P         PG P            RGP    GA GR+
Sbjct: 1346 DKGEDGDPGQPGPPGPSGEAGP---------PGPPG----------KRGPPGAAGAEGRQ 1386

Query: 125  GWEGAARDA 133
            G +GA  +A
Sbjct: 1387 GEKGAKGEA 1395


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 62   EKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGA--------PRATFARAAENLSRG 113
            EK E  + GP     PP    P+ P         PG+         +     A      G
Sbjct: 1169 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPG 1228

Query: 114  PASVGGALGRRGWEGAA 130
             A VGG  G RG +G A
Sbjct: 1229 EAGVGGPKGERGEKGEA 1245



 Score = 27.7 bits (60), Expect = 2.9
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 19/69 (27%)

Query: 65   EEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGRR 124
            ++ EDG   +  PP       P         PG P            RGP    GA GR+
Sbjct: 1295 DKGEDGDPGQPGPPGPSGEAGP---------PGPPG----------KRGPPGAAGAEGRQ 1335

Query: 125  GWEGAARDA 133
            G +GA  +A
Sbjct: 1336 GEKGAKGEA 1344


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 62   EKSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGA--------PRATFARAAENLSRG 113
            EK E  + GP     PP    P+ P         PG+         +     A      G
Sbjct: 1208 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPG 1267

Query: 114  PASVGGALGRRGWEGAA 130
             A VGG  G RG +G A
Sbjct: 1268 EAGVGGPKGERGEKGEA 1284



 Score = 27.7 bits (60), Expect = 2.9
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 19/69 (27%)

Query: 65   EEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGRR 124
            ++ EDG   +  PP       P         PG P            RGP    GA GR+
Sbjct: 1334 DKGEDGDPGQPGPPGPSGEAGP---------PGPPG----------KRGPPGAAGAEGRQ 1374

Query: 125  GWEGAARDA 133
            G +GA  +A
Sbjct: 1375 GEKGAKGEA 1383


>gi|33188461 GATA binding protein 4 [Homo sapiens]
          Length = 442

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 70  GPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGRR----G 125
           G  + S+P +  TPR P  +  LS   G    + +  A   S G A+ G   G +    G
Sbjct: 29  GAGAASSPVYVPTPRVPSSVLGLSYLQGGGAGSASGGASGGSSGGAASGAGPGTQQGSPG 88

Query: 126 WEGAARD 132
           W  A  D
Sbjct: 89  WSQAGAD 95


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,870,569
Number of Sequences: 37866
Number of extensions: 334315
Number of successful extensions: 1486
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1436
Number of HSP's gapped (non-prelim): 98
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.