Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100294234 Sequence: fasta or formatted (290aa) NCBI GI: 239740769
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         39           1
 C cysteine            0.3          1           1
 D aspartate           1.0          3           1
 E glutamate           1.0          3           1
 F phenylalanine       2.8          8           1
 G glycine             5.2         15           1
 H histidine           3.8         11           2
 I isoleucine          3.1          9           2
 K lysine              1.7          5           2
 L leucine             2.1          6           1
 M methionine          6.6         19           1
 N asparagine          1.0          3           1
 P proline             7.9         23           2
 Q glutamine           1.0          3           1
 R arginine           10.3         30           6
 S serine             14.1         41           3
 T threonine          14.5         42           2
 V valine              5.9         17           1
 W tryptophan          3.4         10           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293456          0.861   PREDICTED: hypothetical protein 
LOC100287108          0.861   PREDICTED: hypothetical protein 
LOC100287108          0.861   PREDICTED: hypothetical protein XP_002342658 
LOC100294499          0.861   PREDICTED: hypothetical protein 
LOC100294290          0.861   PREDICTED: hypothetical protein XP_002344064 
LOC100294201          0.861   PREDICTED: hypothetical protein 
LOC100294172          0.861   PREDICTED: hypothetical protein 
LOC100294122          0.861   PREDICTED: hypothetical protein 
MUC3A                 0.036   PREDICTED: mucin 3A, cell surface associated, parti...
MUC5AC                0.034   mucin 5AC 
MUC12                 0.034   PREDICTED: mucin 12 
LOC100132635          0.034   PREDICTED: similar to mucin 5, partial 
MUC3A                 0.034   PREDICTED: mucin 3A, intestinal 
LOC100134138          0.032   PREDICTED: similar to mucin, partial 
LOC100294420          0.030   PREDICTED: similar to mucin 2 
MUC21                 0.030   mucin 21 
LOC729792             0.028   PREDICTED: hypothetical protein 
LOC729792             0.028   PREDICTED: hypothetical protein 
LOC729792             0.028   PREDICTED: hypothetical protein 
LOC100294501          0.028   PREDICTED: hypothetical protein 
LOC100294249          0.028   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.028   PREDICTED: hypothetical protein 
LOC100294204          0.028   PREDICTED: hypothetical protein 
LOC100294136          0.028   PREDICTED: hypothetical protein 
LOC100294091          0.028   PREDICTED: hypothetical protein 
LOC730401             0.028   PREDICTED: hypothetical protein 
RGAG1                 0.027   retrotransposon gag domain containing 1 
LOC100133756          0.027   PREDICTED: hypothetical protein, partial 
LOC100133714          0.027   PREDICTED: similar to Mucin-12, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press