Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239509120
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239509120 PREDICTED: similar to hCG1797215 [Homo sapiens]
(93 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754799 PREDICTED: similar to hCG1797215 [Homo sapiens] 194 1e-50
gi|239743413 PREDICTED: hypothetical protein XP_002342849 [Homo ... 194 1e-50
gi|239509120 PREDICTED: similar to hCG1797215 [Homo sapiens] 194 1e-50
gi|239749323 PREDICTED: similar to hCG1797215 [Homo sapiens] 193 3e-50
gi|224028271 choroideremia isoform b [Homo sapiens] 30 0.42
gi|9966761 choroideremia isoform a [Homo sapiens] 30 0.42
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 27 3.5
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 27 3.5
gi|216547801 SH2 domain containing 3C isoform e [Homo sapiens] 27 4.6
gi|216547790 SH2 domain containing 3C isoform d [Homo sapiens] 27 4.6
gi|216547779 SH2 domain containing 3C isoform c [Homo sapiens] 27 4.6
gi|216547769 SH2 domain containing 3C isoform c [Homo sapiens] 27 4.6
gi|216547763 SH2 domain containing 3C isoform b [Homo sapiens] 27 4.6
gi|41281821 SH2 domain containing 3C isoform a [Homo sapiens] 27 4.6
gi|4505749 phosphofructokinase, muscle [Homo sapiens] 26 6.0
gi|156627541 hypothetical protein LOC200726 [Homo sapiens] 26 6.0
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 26 7.9
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 26 7.9
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 26 7.9
>gi|239754799 PREDICTED: similar to hCG1797215 [Homo sapiens]
Length = 93
Score = 194 bits (494), Expect = 1e-50
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF
Sbjct: 1 MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
Query: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR
Sbjct: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
>gi|239743413 PREDICTED: hypothetical protein XP_002342849 [Homo
sapiens]
Length = 93
Score = 194 bits (494), Expect = 1e-50
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF
Sbjct: 1 MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
Query: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR
Sbjct: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
>gi|239509120 PREDICTED: similar to hCG1797215 [Homo sapiens]
Length = 93
Score = 194 bits (494), Expect = 1e-50
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF
Sbjct: 1 MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
Query: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR
Sbjct: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
>gi|239749323 PREDICTED: similar to hCG1797215 [Homo sapiens]
Length = 93
Score = 193 bits (490), Expect = 3e-50
Identities = 92/93 (98%), Positives = 93/93 (100%)
Query: 1 MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
MDRGAVVGLDLRMTFNCQDLVTNR+SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF
Sbjct: 1 MDRGAVVGLDLRMTFNCQDLVTNRVSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
Query: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR
Sbjct: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
>gi|224028271 choroideremia isoform b [Homo sapiens]
Length = 110
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 53 GSWGKGLFDGQQNELLRKQEREDIISDLRQRRPIWKEEI 91
G+W F G + L QE DI+SD P+W+++I
Sbjct: 45 GNWASFSFSGLLSWLKEYQENSDIVSD----SPVWQDQI 79
>gi|9966761 choroideremia isoform a [Homo sapiens]
Length = 653
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 53 GSWGKGLFDGQQNELLRKQEREDIISDLRQRRPIWKEEI 91
G+W F G + L QE DI+SD P+W+++I
Sbjct: 45 GNWASFSFSGLLSWLKEYQENSDIVSD----SPVWQDQI 79
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Query: 61 DGQQNELLRKQEREDIISDL----RQRRPIWK 88
+G++ ELL ++E ED+++ + + RRP+ K
Sbjct: 182 EGEEEELLMEEEEEDVLAGVSAEDKSRRPLGK 213
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Query: 61 DGQQNELLRKQEREDIISDL----RQRRPIWK 88
+G++ ELL ++E ED+++ + + RRP+ K
Sbjct: 182 EGEEEELLMEEEEEDVLAGVSAEDKSRRPLGK 213
>gi|216547801 SH2 domain containing 3C isoform e [Homo sapiens]
Length = 700
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 26 SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
+ TE +Q ++ G + L + P+G WGK
Sbjct: 349 AATETSSQQARSYGERLKELSENGAPEGDWGK 380
>gi|216547790 SH2 domain containing 3C isoform d [Homo sapiens]
Length = 702
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 26 SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
+ TE +Q ++ G + L + P+G WGK
Sbjct: 351 AATETSSQQARSYGERLKELSENGAPEGDWGK 382
>gi|216547779 SH2 domain containing 3C isoform c [Homo sapiens]
Length = 506
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 26 SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
+ TE +Q ++ G + L + P+G WGK
Sbjct: 155 AATETSSQQARSYGERLKELSENGAPEGDWGK 186
>gi|216547769 SH2 domain containing 3C isoform c [Homo sapiens]
Length = 506
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 26 SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
+ TE +Q ++ G + L + P+G WGK
Sbjct: 155 AATETSSQQARSYGERLKELSENGAPEGDWGK 186
>gi|216547763 SH2 domain containing 3C isoform b [Homo sapiens]
Length = 703
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 26 SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
+ TE +Q ++ G + L + P+G WGK
Sbjct: 352 AATETSSQQARSYGERLKELSENGAPEGDWGK 383
>gi|41281821 SH2 domain containing 3C isoform a [Homo sapiens]
Length = 860
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 26 SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
+ TE +Q ++ G + L + P+G WGK
Sbjct: 509 AATETSSQQARSYGERLKELSENGAPEGDWGK 540
>gi|4505749 phosphofructokinase, muscle [Homo sapiens]
Length = 780
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 7 VGLDLRMTFNCQ--DLVTNRMSGTERKAQVGKTQGFQCGRLLHSAG 50
VG D + C D + +GT+R+ + +T G CG L AG
Sbjct: 540 VGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAG 585
>gi|156627541 hypothetical protein LOC200726 [Homo sapiens]
Length = 181
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 19 DLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLFDGQQNELLRKQEREDIIS 78
D V +R G R+ VG+ + + H+ QG++ + L + + L +K+ ED+IS
Sbjct: 104 DCVLSRNHGLGRRQLVGEEEKISAAQPQHTRSKQGTYSQLL---RTSFLKKKELIEDLIS 160
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 66 ELLRK--QEREDIISDLRQRRPIWKEEI 91
E+LR+ QE E++ +D+R+ + WK +I
Sbjct: 147 EMLRQKQQEAEELEADIREEKASWKTQI 174
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 66 ELLRK--QEREDIISDLRQRRPIWKEEI 91
E+LR+ QE E++ +D+R+ + WK +I
Sbjct: 147 EMLRQKQQEAEELEADIREEKASWKTQI 174
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 66 ELLRK--QEREDIISDLRQRRPIWKEEI 91
E+LR+ QE E++ +D+R+ + WK +I
Sbjct: 147 EMLRQKQQEAEELEADIREEKASWKTQI 174
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,682,840
Number of Sequences: 37866
Number of extensions: 145254
Number of successful extensions: 435
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 20
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.