Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239508708
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508708 PREDICTED: similar to hCG1998993 [Homo sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749039 PREDICTED: hypothetical protein XP_002346890 [Homo ... 378 e-105
gi|239508708 PREDICTED: similar to hCG1998993 [Homo sapiens] 378 e-105
gi|239743064 PREDICTED: hypothetical protein XP_002342749 [Homo ... 374 e-104
gi|239754483 PREDICTED: similar to FLJ00049 protein [Homo sapiens] 370 e-103
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 36 0.020
gi|154816198 transcription elongation factor B polypeptide 3C-li... 34 0.058
gi|156938279 transcription elongation factor B polypeptide 3C [H... 34 0.058
gi|189181750 human immunodeficiency virus type I enhancer bindin... 33 0.099
gi|116089331 human immunodeficiency virus type I enhancer bindin... 33 0.099
gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo sap... 33 0.099
gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo sap... 33 0.099
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 33 0.13
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 33 0.17
gi|156416026 zinc finger protein 219 [Homo sapiens] 32 0.29
gi|156415998 zinc finger protein 219 [Homo sapiens] 32 0.29
gi|156415996 zinc finger protein 219 [Homo sapiens] 32 0.29
gi|238776840 patatin-like phospholipase domain containing 1 isof... 32 0.38
gi|224589138 patatin-like phospholipase domain containing 1 isof... 32 0.38
gi|224593249 patatin-like phospholipase domain containing 1 isof... 32 0.38
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 32 0.38
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 31 0.49
gi|93102405 hypothetical protein LOC84182 [Homo sapiens] 31 0.64
gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo ... 30 0.84
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 30 1.1
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 30 1.1
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 30 1.1
gi|20986488 YY1-associated protein isoform 2 [Homo sapiens] 30 1.1
gi|20986490 YY1-associated protein isoform 3 [Homo sapiens] 30 1.1
gi|124378039 SEC16 homolog A [Homo sapiens] 30 1.4
gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens] 30 1.4
>gi|239749039 PREDICTED: hypothetical protein XP_002346890 [Homo
sapiens]
Length = 177
Score = 378 bits (971), Expect = e-105
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|239508708 PREDICTED: similar to hCG1998993 [Homo sapiens]
Length = 177
Score = 378 bits (971), Expect = e-105
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|239743064 PREDICTED: hypothetical protein XP_002342749 [Homo
sapiens]
Length = 177
Score = 374 bits (961), Expect = e-104
Identities = 176/177 (99%), Positives = 176/177 (99%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRS GDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|239754483 PREDICTED: similar to FLJ00049 protein [Homo sapiens]
Length = 177
Score = 370 bits (951), Expect = e-103
Identities = 175/177 (98%), Positives = 175/177 (98%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKN GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPG AHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 35.8 bits (81), Expect = 0.020
Identities = 33/100 (33%), Positives = 36/100 (36%), Gaps = 29/100 (29%)
Query: 75 PGSEEKPLQPSAW--PGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPG 132
PGS P+ P PGI P P +PP AA P G
Sbjct: 240 PGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPS--------------------AG 279
Query: 133 TPGCAHVGASRS----LPAMRMRCPGTSLLQL---GPVGL 165
TPG H G S P M PG S +QL GP GL
Sbjct: 280 TPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGL 319
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 34.3 bits (77), Expect = 0.058
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 21 PQGPREEQSKR------EERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKN 74
PQ P E S++ +ER + + + +A RSP P+ +R R
Sbjct: 87 PQDPEESASRQRFGEALQEREKAWGFPE-NATAPRSPSHS---------PEHRRTARRTP 136
Query: 75 PGSEEK-PLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGT 133
PG + P PS P +P+ ++ P T P P+P+G +
Sbjct: 137 PGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT----RTAPLPMPEGPEPAVPGEQ 192
Query: 134 PGCAHVGASRSLPAMRMRCPG 154
PG H A++ P + C G
Sbjct: 193 PGRGHAHAAQGGPLLGQGCQG 213
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 34.3 bits (77), Expect = 0.058
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 21 PQGPREEQSKR------EERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKN 74
PQ P E S++ +ER + + + +A RSP P+ +R R
Sbjct: 87 PQDPEESASRQRFGEALQEREKAWGFPE-NATAPRSPSHS---------PEHRRTARRTP 136
Query: 75 PGSEEK-PLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGT 133
PG + P PS P +P+ ++ P T P P+P+G +
Sbjct: 137 PGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT----RTAPLPMPEGPEPAVPGEQ 192
Query: 134 PGCAHVGASRSLPAMRMRCPG 154
PG H A++ P + C G
Sbjct: 193 PGRGHAHAAQGGPLLGQGCQG 213
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 33.5 bits (75), Expect = 0.099
Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTP 134
P S +P PS G P P N + P+ C P PQ SA P P
Sbjct: 1962 PVSPRRPWSPSKEAGSRP--PLARKHSLTKNDSSPQRC----SPAREPQASA----PSPP 2011
Query: 135 GCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSR 170
G HV R + A+ G+ LQL P+ LC L R
Sbjct: 2012 GL-HVDPGRGMGALPC---GSPRLQLSPLTLCPLGR 2043
Score = 29.6 bits (65), Expect = 1.4
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 21 PQGPREEQSKREERVEPYVACDIGLSAS----RSPGDGSLVRLSECWPDWQRG--GERKN 74
PQG R QS P + SA+ RS G L S +P R GE +
Sbjct: 2318 PQGRRAAQSWSPRLESPRAPTNPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRT 2377
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQA 103
KP S P +P QP++ VPP A
Sbjct: 2378 RQDSPKP-SGSGEPRAHPHQPEDRVPPNA 2405
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 33.5 bits (75), Expect = 0.099
Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTP 134
P S +P PS G P P N + P+ C P PQ SA P P
Sbjct: 1962 PVSPRRPWSPSKEAGSRP--PLARKHSLTKNDSSPQRC----SPAREPQASA----PSPP 2011
Query: 135 GCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSR 170
G HV R + A+ G+ LQL P+ LC L R
Sbjct: 2012 GL-HVDPGRGMGALPC---GSPRLQLSPLTLCPLGR 2043
Score = 29.6 bits (65), Expect = 1.4
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 21 PQGPREEQSKREERVEPYVACDIGLSAS----RSPGDGSLVRLSECWPDWQRG--GERKN 74
PQG R QS P + SA+ RS G L S +P R GE +
Sbjct: 2319 PQGRRAAQSWSPRLESPRAPTNPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRT 2378
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQA 103
KP S P +P QP++ VPP A
Sbjct: 2379 RQDSPKP-SGSGEPRAHPHQPEDRVPPNA 2406
>gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo
sapiens]
Length = 731
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 38 YVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQE 97
Y D G S + GD L+ L + DW + P + P+A+ +E
Sbjct: 35 YTGAD-GQQVSLAEGDRFLL-LRKTNSDWWLARRLEAPSTSRPIFVPAAY------MIEE 86
Query: 98 VVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSL 157
+P Q+ +P LW P+ + GS L P A + + P R C S
Sbjct: 87 SIPSQSPTTVIPGQLLWTPGPK-LFHGSLEELSQALPSRAQASSEQPPPLPRKMCRSVST 145
Query: 158 LQLGP 162
L P
Sbjct: 146 DNLSP 150
>gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo
sapiens]
Length = 640
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 38 YVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQE 97
Y D G S + GD L+ L + DW + P + P+A+ +E
Sbjct: 35 YTGAD-GQQVSLAEGDRFLL-LRKTNSDWWLARRLEAPSTSRPIFVPAAY------MIEE 86
Query: 98 VVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSL 157
+P Q+ +P LW P+ + GS L P A + + P R C S
Sbjct: 87 SIPSQSPTTVIPGQLLWTPGPK-LFHGSLEELSQALPSRAQASSEQPPPLPRKMCRSVST 145
Query: 158 LQLGP 162
L P
Sbjct: 146 DNLSP 150
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 33.1 bits (74), Expect = 0.13
Identities = 24/103 (23%), Positives = 40/103 (38%)
Query: 20 FPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNPGSEE 79
F G EE+ + +R+ P ++ + + SL++ WP + + P +
Sbjct: 138 FGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPTLQPPTLRPPTLQP 197
Query: 80 KPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVP 122
LQP G P + PP EL + EP P+P
Sbjct: 198 PTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP 240
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 32.7 bits (73), Expect = 0.17
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTE-PRPVPQGSALRLCP 131
PG + PL+P + P PL P +PP + + AV + P P P L+ P
Sbjct: 855 PGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPP 912
Score = 26.9 bits (58), Expect = 9.3
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 81 PLQPSAWPGINPLQPQEVVPPQAANKA--VPELCLWMTEPRPVPQGSALRLCPGTP--GC 136
P P PGI +Q Q VPP A+N A P P+ P L P P
Sbjct: 825 PQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSST 884
Query: 137 AHVGASRSLPAMRMRCPGTSLLQL 160
+ AS S + R+ P S QL
Sbjct: 885 SSAVASSSETSSRLPAPTPSDFQL 908
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.29
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
G+ E+PL +A P QPQ PPQ ++VP+ EP P P+ R TP
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261
Query: 136 CAHVGASRSLPAMRMRCPGTSLLQ 159
A + P R + G S Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.29
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
G+ E+PL +A P QPQ PPQ ++VP+ EP P P+ R TP
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261
Query: 136 CAHVGASRSLPAMRMRCPGTSLLQ 159
A + P R + G S Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.29
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
G+ E+PL +A P QPQ PPQ ++VP+ EP P P+ R TP
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261
Query: 136 CAHVGASRSLPAMRMRCPGTSLLQ 159
A + P R + G S Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285
>gi|238776840 patatin-like phospholipase domain containing 1 isoform
3 [Homo sapiens]
Length = 532
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 73 KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWM---TEPRPVPQGSALRL 129
K P S P+ PG++PL PQ+ V P + P L T PRP L
Sbjct: 379 KPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGS----PARSLHSQAPTSPRP-------SL 427
Query: 130 CPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLL 168
P T G SL A + P L Q P + LL
Sbjct: 428 GPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALL 466
>gi|224589138 patatin-like phospholipase domain containing 1 isoform
2 [Homo sapiens]
Length = 446
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 73 KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWM---TEPRPVPQGSALRL 129
K P S P+ PG++PL PQ+ V P + P L T PRP L
Sbjct: 293 KPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGS----PARSLHSQAPTSPRP-------SL 341
Query: 130 CPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLL 168
P T G SL A + P L Q P + LL
Sbjct: 342 GPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALL 380
>gi|224593249 patatin-like phospholipase domain containing 1 isoform
1 [Homo sapiens]
Length = 437
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 73 KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWM---TEPRPVPQGSALRL 129
K P S P+ PG++PL PQ+ V P + P L T PRP L
Sbjct: 284 KPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGS----PARSLHSQAPTSPRP-------SL 332
Query: 130 CPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLL 168
P T G SL A + P L Q P + LL
Sbjct: 333 GPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALL 371
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 31.6 bits (70), Expect = 0.38
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 84 PSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPR-------PVPQGSALRLCPGTPGC 136
PSA P P Q + P +A++A+ M P+ P P + L + +PG
Sbjct: 1560 PSA-PNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGA 1618
Query: 137 AHVGASRSLPAMRM---RCPGTSLLQLGPV 163
A V AS P M PGTSL PV
Sbjct: 1619 APVLASSQTPVPVMAPSSTPGTSLASASPV 1648
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 31.2 bits (69), Expect = 0.49
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 74 NPGSEEKPLQPSAWPGINPLQP-QEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPG 132
+P S P +P P + PLQP PP A C T P PVP PG
Sbjct: 270 SPTSRWAPRRPPPPPPVLPLQPCSPAQPPVLPALAPAPACPLPTSP-PVPAPHVTPHAPG 328
Query: 133 TPGCAHVGASRSLPAMRMRCPGTSL 157
P H + R+ CP L
Sbjct: 329 PPD--HPNQPPMMTCERLPCPTAGL 351
>gi|93102405 hypothetical protein LOC84182 [Homo sapiens]
Length = 757
Score = 30.8 bits (68), Expect = 0.64
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 16 LTREFPQGPREEQSKREERVEPYVAC---DIGLSASRSPGDGSLVRLSECWPDWQRGGER 72
L R P + + +V C DI S++ SP SL +LSE + Q+
Sbjct: 229 LRRSSPSSSSTQPQEESRKVPELFVCTQQDILASSNSSPSRTSLGQLSELTVERQKTTAS 288
Query: 73 KNPGSEEKPLQPSAWPGINPLQPQEVVP 100
P K L P W P P E P
Sbjct: 289 SPPHLPSKRLPP--WDRARPRDPSEDTP 314
>gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo
sapiens]
Length = 616
Score = 30.4 bits (67), Expect = 0.84
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 105 NKAVPELCLWMTEPRPVPQGSALRL----CPGTPGCAHVGASRSLPAMRMRCPG 154
N +P LW RPVP SAL L PG G + G S +CPG
Sbjct: 27 NFLLPVRRLWPCSRRPVPSSSALPLLHAFAPGPQGRSPAGISTEPVPPPPQCPG 80
>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 93 LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGCA 137
L+PQE PP AA +A P LCL + RP+PQ A +RLC T A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183
Query: 138 HVGASRSLPAMRMR 151
H G + +P R+R
Sbjct: 184 HKG--QRMPLYRIR 195
>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 93 LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGCA 137
L+PQE PP AA +A P LCL + RP+PQ A +RLC T A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183
Query: 138 HVGASRSLPAMRMR 151
H G + +P R+R
Sbjct: 184 HKG--QRMPLYRIR 195
>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 93 LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGCA 137
L+PQE PP AA +A P LCL + RP+PQ A +RLC T A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183
Query: 138 HVGASRSLPAMRMR 151
H G + +P R+R
Sbjct: 184 HKG--QRMPLYRIR 195
>gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]
Length = 796
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 54 GSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCL 113
G +++L + + R+ S KPL P + P P Q+ + P +
Sbjct: 433 GVVLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKM 492
Query: 114 WMTEPRPVPQGSALRLCPGTP-----GCAHVGASRSLPAM 148
+ P P+ + L+ PG P G + +LPAM
Sbjct: 493 VLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAM 532
>gi|20986490 YY1-associated protein isoform 3 [Homo sapiens]
Length = 750
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 54 GSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCL 113
G +++L + + R+ S KPL P + P P Q+ + P +
Sbjct: 387 GVVLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKM 446
Query: 114 WMTEPRPVPQGSALRLCPGTP-----GCAHVGASRSLPAM 148
+ P P+ + L+ PG P G + +LPAM
Sbjct: 447 VLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAM 486
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 29.6 bits (65), Expect = 1.4
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 88 PGINPLQPQEVVPPQ--AANKAVPELCLW-MTEPRPVP-QGSALRLCPGTPGCAHVGASR 143
PG+ Q QE+VPPQ A+ +P+ ++ P +P QG A V A +
Sbjct: 1052 PGLERAQ-QELVPPQQQASPPQLPKAMFSELSNPESLPAQGQAQNSAQSPASLVLVDAGQ 1110
Query: 144 SLPAMRMRCPGTSLLQLGPVGLCLLSRAPW 173
LP + SL+ G + S PW
Sbjct: 1111 QLPPRPPQSSSVSLVSSGSGQAAVPSEQPW 1140
>gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]
Length = 196
Score = 29.6 bits (65), Expect = 1.4
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 25/151 (16%)
Query: 3 RESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLSEC 62
R+ L G+ G GL +GP + + + ++ + + S SR+ G
Sbjct: 53 RKGLRRGEPGSRGLG----EGPAAARRPQVQSIDTTPSGEGAPSFSRAQRPG-------- 100
Query: 63 WPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVP 122
R G + S+ P + +AW + P + Q+ + +A +A E R +P
Sbjct: 101 -----RSGPSPSLASDPAPGRGAAWGSLRPGKRQQALESEAGGRASREARAAEVRER-IP 154
Query: 123 QGSALRLCPG-----TPGCAHVGASRSLPAM 148
G + CPG TP CA + + P++
Sbjct: 155 GGGS--WCPGRRDWLTPPCAGSSSQLTEPSV 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,227,997
Number of Sequences: 37866
Number of extensions: 544460
Number of successful extensions: 1881
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 1810
Number of HSP's gapped (non-prelim): 159
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.