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Search of human proteins with 237858670
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237858670 hypothetical protein LOC123207 isoform e [Homo
sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237858670 hypothetical protein LOC123207 isoform e [Homo sapi... 300 3e-82
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi... 244 3e-65
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 243 6e-65
gi|237858666 hypothetical protein LOC123207 isoform c [Homo sapi... 242 7e-65
gi|237858662 hypothetical protein LOC123207 isoform a [Homo sapi... 242 7e-65
gi|163965366 nascent polypeptide-associated complex alpha subuni... 37 0.008
gi|40548408 p30 DBC protein [Homo sapiens] 36 0.010
gi|24432106 p30 DBC protein [Homo sapiens] 36 0.010
gi|110349719 titin isoform N2-A [Homo sapiens] 35 0.018
gi|110349717 titin isoform novex-2 [Homo sapiens] 35 0.018
gi|110349713 titin isoform novex-1 [Homo sapiens] 35 0.018
gi|110349715 titin isoform N2-B [Homo sapiens] 35 0.018
gi|171543850 RUN domain containing 1 [Homo sapiens] 34 0.052
gi|30795231 brain abundant, membrane attached signal protein 1 [... 32 0.20
gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo sapi... 32 0.26
gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo sapi... 32 0.26
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 30 0.58
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 30 0.58
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 30 0.58
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 30 0.58
gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo ... 30 0.58
gi|18490978 intermediate filament family orphan isoform 2 [Homo ... 30 0.58
gi|89213250 intermediate filament family orphan isoform 4 [Homo ... 30 0.58
gi|4758666 LATS homolog 1 [Homo sapiens] 30 0.75
gi|122937480 Ras association (RalGDS/AF-6) domain family (N-term... 30 0.98
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 29 1.7
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 29 1.7
gi|61175224 adenosine deaminase-like isoform 2 [Homo sapiens] 29 1.7
gi|4885381 histone cluster 1, H1b [Homo sapiens] 29 1.7
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 29 1.7
>gi|237858670 hypothetical protein LOC123207 isoform e [Homo
sapiens]
Length = 149
Score = 300 bits (768), Expect = 3e-82
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DKLCYSIPQQLEETQEGVSGIPDTPCHFL 149
DKLCYSIPQQLEETQEGVSGIPDTPCHFL
Sbjct: 121 DKLCYSIPQQLEETQEGVSGIPDTPCHFL 149
>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
sapiens]
Length = 167
Score = 244 bits (622), Expect = 3e-65
Identities = 126/134 (94%), Positives = 126/134 (94%), Gaps = 2/134 (1%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DKL--CYSIPQQLE 132
DK CY LE
Sbjct: 121 DKTGSCYIAQAGLE 134
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 243 bits (619), Expect = 6e-65
Identities = 122/123 (99%), Positives = 123/123 (100%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DKL 123
DK+
Sbjct: 121 DKV 123
>gi|237858666 hypothetical protein LOC123207 isoform c [Homo
sapiens]
Length = 153
Score = 242 bits (618), Expect = 7e-65
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DK 122
DK
Sbjct: 121 DK 122
>gi|237858662 hypothetical protein LOC123207 isoform a [Homo
sapiens]
Length = 153
Score = 242 bits (618), Expect = 7e-65
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK
Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL
Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120
Query: 121 DK 122
DK
Sbjct: 121 DK 122
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 36.6 bits (83), Expect = 0.008
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 13 ATPNTRGSARLLCAEMPKKAGA----TTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIH 68
ATP+ +G+ A P G + KG + P P GP PKG T
Sbjct: 1210 ATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAA 1269
Query: 69 AKPGSKQNAVTDLTAEAVNVAIAAPPS 95
P K T A N A+ PPS
Sbjct: 1270 TPPSLKGGLATPPHKGAPNPAVVTPPS 1296
Score = 31.2 bits (69), Expect = 0.34
Identities = 25/87 (28%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 13 ATPNTRGSARLLCAEMPK-KAGATTKGKSQSKEPERPLPPL---GPVAVDPKGCVTIAIH 68
ATP +G+ A +P K G T + P PP GP PKG
Sbjct: 1049 ATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAA 1108
Query: 69 AKPGSKQNAVTDLTAEAVNVAIAAPPS 95
P K T A A PPS
Sbjct: 1109 TPPSPKGGLATPPHKGAPTTPAATPPS 1135
Score = 30.4 bits (67), Expect = 0.58
Identities = 24/87 (27%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 13 ATPNTRGSARLLCAEMPKKAGA----TTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIH 68
ATP +G+ A P G + KG + P P G PKG T
Sbjct: 1164 ATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1223
Query: 69 AKPGSKQNAVTDLTAEAVNVAIAAPPS 95
P K T A A PPS
Sbjct: 1224 TPPSPKGGLATPSPKGAPTTPAATPPS 1250
Score = 30.0 bits (66), Expect = 0.75
Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 13 ATPNTRGSARLLCAEMPK-KAGATTKGKSQSKEPERPLPPL---GPVAVDPKGCVTIAIH 68
A+P+ +G+ A P K G T + P PP GP PKG T
Sbjct: 932 ASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAA 991
Query: 69 AKPGSKQNAVTDLTAEAVNVAIAAPPS 95
P K T A PPS
Sbjct: 992 TPPSPKGGPATPSPKGAPTPPAVTPPS 1018
Score = 29.6 bits (65), Expect = 0.98
Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 13 ATPNTRGSARL-LCAEMPKKAGATT--KGKSQSKEPE-RPLPPL--------GPVAVDPK 60
ATP + + L + + PKKA AT KG S P+ P PP GP PK
Sbjct: 901 ATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPK 960
Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPS 95
T P K T A A PPS
Sbjct: 961 WAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS 995
Score = 29.6 bits (65), Expect = 0.98
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 13 ATPNTRGSARLLCAEMPK-KAGATT---KGKSQSKEPERPLPPLGPVAVDPKGCVTIAIH 68
ATP +G+ A P K G T KG + P P G PKG T
Sbjct: 1118 ATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAA 1177
Query: 69 AKPGSKQNAVTDLTAEAVNVAIAAPPS 95
P K T A A PPS
Sbjct: 1178 TPPSPKGGLATPSPKGAPTTPAATPPS 1204
Score = 28.5 bits (62), Expect = 2.2
Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 13 ATPNTRGSARLLCAEMPKKAG--ATTKGKSQSKEPERPLP-PLGPVAVDP-KGCVTIAIH 68
ATP+ +G+ A P G AT K P P P G +A P KG T
Sbjct: 1072 ATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAA 1131
Query: 69 AKPGSKQNAVTDLTAEAVNVAIAAPPS 95
P K T A A PPS
Sbjct: 1132 TPPSPKGGLATPPPKGAPTTPAATPPS 1158
Score = 28.1 bits (61), Expect = 2.9
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 13 ATPNTRGSARLLCAEMPK-KAGATTKGKSQSKEPERPLPPL---GPVAVDPKGCVTIAIH 68
ATP+ + + A P K G T + P PP GP PKG T
Sbjct: 955 ATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAV 1014
Query: 69 AKPGSKQN-AVTDLTAEAVNVAIAAPPS 95
P K + A T A A PPS
Sbjct: 1015 TPPSPKGSPAATPFPKGASTPPAATPPS 1042
Score = 27.7 bits (60), Expect = 3.7
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 13 ATPNTRGSARLLCAEMPK-KAGATT---KGKSQSKEPERPLPPLGPVAVDPKGCVTIAIH 68
ATP +G+ A P K G T KG P P GP PKG T
Sbjct: 1256 ATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAA 1315
Query: 69 AKPGSKQNAVTDLTAEAVNVAIAAPPS 95
P K + T A PPS
Sbjct: 1316 TPPSPKGSPGTPPPKGAPTPPAVTPPS 1342
>gi|40548408 p30 DBC protein [Homo sapiens]
Length = 923
Score = 36.2 bits (82), Expect = 0.010
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 26 AEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIH 68
AE P+ ATT+ ++ + PE P PPL P + GCV +++H
Sbjct: 482 AETPE---ATTQQETDTDLPEAPPPPLEPAVIARPGCVNLSLH 521
>gi|24432106 p30 DBC protein [Homo sapiens]
Length = 923
Score = 36.2 bits (82), Expect = 0.010
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 26 AEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIH 68
AE P+ ATT+ ++ + PE P PPL P + GCV +++H
Sbjct: 482 AETPE---ATTQQETDTDLPEAPPPPLEPAVIARPGCVNLSLH 521
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 35.4 bits (80), Expect = 0.018
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 42 SKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNA-VTDLTAEAVNVAIAAPPSEGEAN 100
S +P RP P+ VA+DP A PG QN VTD T +V++A + P EG
Sbjct: 30014 SGKPSRPSKPI--VAMDPI--------APPGKPQNPRVTDTTRTSVSLAWSVPEDEG--G 30061
Query: 101 AELCRYLSKVLELRKSDVVLDKLCYSIPQQLEE 133
+++ YL +E++K D C + P ++ E
Sbjct: 30062 SKVTGYL---IEMQKVDQHEWTKCNTTPTKIRE 30091
Score = 35.0 bits (79), Expect = 0.023
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 23/113 (20%)
Query: 27 EMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAV 86
E+PKK + KE E P PP P A+ KP ++ A V
Sbjct: 9401 EIPKKKVPEERKPVPRKEEEVPPPPKVP-----------ALPKKPVPEEKV-----AVPV 9444
Query: 87 NVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKLCYSIPQQLEETQEGVS 139
VA APP E + K + K V +KL +++PQ++E T+ VS
Sbjct: 9445 PVAKKAPPPRAEVS-------KKTVVEEKRFVAEEKLSFAVPQRVEVTRHEVS 9490
Score = 30.4 bits (67), Expect = 0.58
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 10 HLRATPNT---------RGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
H++ TP T R + C + G+ KG Q +RP PP+GPV+ D
Sbjct: 16866 HIKTTPATLALEKIKAKRSDSGKYCVVVENSTGSR-KGFCQVNVVDRPGPPVGPVSFDEV 16924
Query: 61 GCVTIAIHAKP-----GSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLE 112
+ I KP GSK +T+ E V A+A+ +SK+LE
Sbjct: 16925 TKDYMVISWKPPLDDGGSK---ITNYIIEKKEVGKDVWMPVTSASAKTTCKVSKLLE 16978
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 35.4 bits (80), Expect = 0.018
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 42 SKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNA-VTDLTAEAVNVAIAAPPSEGEAN 100
S +P RP P+ VA+DP A PG QN VTD T +V++A + P EG
Sbjct: 23709 SGKPSRPSKPI--VAMDPI--------APPGKPQNPRVTDTTRTSVSLAWSVPEDEG--G 23756
Query: 101 AELCRYLSKVLELRKSDVVLDKLCYSIPQQLEE 133
+++ YL +E++K D C + P ++ E
Sbjct: 23757 SKVTGYL---IEMQKVDQHEWTKCNTTPTKIRE 23786
Score = 30.4 bits (67), Expect = 0.58
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 10 HLRATPNT---------RGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
H++ TP T R + C + G+ KG Q +RP PP+GPV+ D
Sbjct: 10561 HIKTTPATLALEKIKAKRSDSGKYCVVVENSTGSR-KGFCQVNVVDRPGPPVGPVSFDEV 10619
Query: 61 GCVTIAIHAKP-----GSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLE 112
+ I KP GSK +T+ E V A+A+ +SK+LE
Sbjct: 10620 TKDYMVISWKPPLDDGGSK---ITNYIIEKKEVGKDVWMPVTSASAKTTCKVSKLLE 10673
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 35.4 bits (80), Expect = 0.018
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 42 SKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNA-VTDLTAEAVNVAIAAPPSEGEAN 100
S +P RP P+ VA+DP A PG QN VTD T +V++A + P EG
Sbjct: 23642 SGKPSRPSKPI--VAMDPI--------APPGKPQNPRVTDTTRTSVSLAWSVPEDEG--G 23689
Query: 101 AELCRYLSKVLELRKSDVVLDKLCYSIPQQLEE 133
+++ YL +E++K D C + P ++ E
Sbjct: 23690 SKVTGYL---IEMQKVDQHEWTKCNTTPTKIRE 23719
Score = 30.4 bits (67), Expect = 0.58
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 10 HLRATPNT---------RGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
H++ TP T R + C + G+ KG Q +RP PP+GPV+ D
Sbjct: 10494 HIKTTPATLALEKIKAKRSDSGKYCVVVENSTGSR-KGFCQVNVVDRPGPPVGPVSFDEV 10552
Query: 61 GCVTIAIHAKP-----GSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLE 112
+ I KP GSK +T+ E V A+A+ +SK+LE
Sbjct: 10553 TKDYMVISWKPPLDDGGSK---ITNYIIEKKEVGKDVWMPVTSASAKTTCKVSKLLE 10606
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 35.4 bits (80), Expect = 0.018
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 42 SKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNA-VTDLTAEAVNVAIAAPPSEGEAN 100
S +P RP P+ VA+DP A PG QN VTD T +V++A + P EG
Sbjct: 23517 SGKPSRPSKPI--VAMDPI--------APPGKPQNPRVTDTTRTSVSLAWSVPEDEG--G 23564
Query: 101 AELCRYLSKVLELRKSDVVLDKLCYSIPQQLEE 133
+++ YL +E++K D C + P ++ E
Sbjct: 23565 SKVTGYL---IEMQKVDQHEWTKCNTTPTKIRE 23594
Score = 30.4 bits (67), Expect = 0.58
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 10 HLRATPNT---------RGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60
H++ TP T R + C + G+ KG Q +RP PP+GPV+ D
Sbjct: 10369 HIKTTPATLALEKIKAKRSDSGKYCVVVENSTGSR-KGFCQVNVVDRPGPPVGPVSFDEV 10427
Query: 61 GCVTIAIHAKP-----GSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLE 112
+ I KP GSK +T+ E V A+A+ +SK+LE
Sbjct: 10428 TKDYMVISWKPPLDDGGSK---ITNYIIEKKEVGKDVWMPVTSASAKTTCKVSKLLE 10481
>gi|171543850 RUN domain containing 1 [Homo sapiens]
Length = 613
Score = 33.9 bits (76), Expect = 0.052
Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 32 AGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVAIA 91
A K K + +E E PLPP V P G V A+PG+ + + TAE A
Sbjct: 15 AAVGPKAKDEEEEEEEPLPPCEAVRWAPVGAVA---EARPGATA-FLEEATAEEPGAAPG 70
Query: 92 APPSEGEANAELCRYLSKVLELRKSDVVLDKLCYSIPQQLEETQEGVSGIP 142
+PP R E R+ D L L Q ++ V G P
Sbjct: 71 SPPDSPGRTLRRLR-----AERRRLDSALLALSSHFAQVQFRLRQVVRGAP 116
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 32.0 bits (71), Expect = 0.20
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 26 AEMPKKAGATTKGKSQSKE---PERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDL- 81
A P ++ A G+ SKE P++ P P A + K A +KPGS + A +
Sbjct: 126 AAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKE 185
Query: 82 TAEAVNVAIAAPPSEGEA 99
T A + P ++G A
Sbjct: 186 TPAATEAPSSTPKAQGPA 203
>gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo
sapiens]
Length = 616
Score = 31.6 bits (70), Expect = 0.26
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 20 SARLLCAEMPKKAGATTK--------GKSQSKEPERPLPPLG 53
S +LL +E PK+ GATTK G SKE + + PLG
Sbjct: 293 STQLLVSEDPKEGGATTKESESKTCLGTESSKESQHTVEPLG 334
>gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo
sapiens]
Length = 725
Score = 31.6 bits (70), Expect = 0.26
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 20 SARLLCAEMPKKAGATTK--------GKSQSKEPERPLPPLG 53
S +LL +E PK+ GATTK G SKE + + PLG
Sbjct: 293 STQLLVSEDPKEGGATTKESESKTCLGTESSKESQHTVEPLG 334
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.4 bits (67), Expect = 0.58
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 37 KGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVAI--AAPP 94
+G+ Q P P PPL P + P VT+ A P S + T TA +V + +PP
Sbjct: 417 QGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHP-TPSTAPGPHVPLMPPSPP 475
Query: 95 SE 96
S+
Sbjct: 476 SQ 477
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.4 bits (67), Expect = 0.58
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 37 KGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVAI--AAPP 94
+G+ Q P P PPL P + P VT+ A P S + T TA +V + +PP
Sbjct: 417 QGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHP-TPSTAPGPHVPLMPPSPP 475
Query: 95 SE 96
S+
Sbjct: 476 SQ 477
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.4 bits (67), Expect = 0.58
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 37 KGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVAI--AAPP 94
+G+ Q P P PPL P + P VT+ A P S + T TA +V + +PP
Sbjct: 417 QGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHP-TPSTAPGPHVPLMPPSPP 475
Query: 95 SE 96
S+
Sbjct: 476 SQ 477
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.4 bits (67), Expect = 0.58
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 37 KGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVAI--AAPP 94
+G+ Q P P PPL P + P VT+ A P S + T TA +V + +PP
Sbjct: 417 QGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHP-TPSTAPGPHVPLMPPSPP 475
Query: 95 SE 96
S+
Sbjct: 476 SQ 477
>gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo
sapiens]
Length = 240
Score = 30.4 bits (67), Expect = 0.58
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 5 RSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPER 47
RSG R R+ P TRGS + +KA A +SK+P R
Sbjct: 132 RSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGR 174
>gi|18490978 intermediate filament family orphan isoform 2 [Homo
sapiens]
Length = 559
Score = 30.4 bits (67), Expect = 0.58
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 26/102 (25%)
Query: 45 PERPLPPLGPVAVDPKG-----CVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEA 99
P PL P GP A P G +A+ GS N + L
Sbjct: 39 PPAPLSPAGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTL------------------ 80
Query: 100 NAELCRYLSKVLELRKSDVVLDKLCYSIPQQLEETQEGVSGI 141
N +L+KV EL + + +L+K + Q LEE ++G G+
Sbjct: 81 NLRFRCFLAKVHELERRNRLLEK---QLQQALEEGKQGRRGL 119
>gi|89213250 intermediate filament family orphan isoform 4 [Homo
sapiens]
Length = 563
Score = 30.4 bits (67), Expect = 0.58
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 26/102 (25%)
Query: 45 PERPLPPLGPVAVDPKG-----CVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEA 99
P PL P GP A P G +A+ GS N + L
Sbjct: 39 PPAPLSPAGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTL------------------ 80
Query: 100 NAELCRYLSKVLELRKSDVVLDKLCYSIPQQLEETQEGVSGI 141
N +L+KV EL + + +L+K + Q LEE ++G G+
Sbjct: 81 NLRFRCFLAKVHELERRNRLLEK---QLQQALEEGKQGRRGL 119
>gi|4758666 LATS homolog 1 [Homo sapiens]
Length = 1130
Score = 30.0 bits (66), Expect = 0.75
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 37 KGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAK-PGSKQNAVTDLTAEAVNVAIAAPPS 95
KG +S P+R PPLG ++A H++ P S+ + L+ ++ + A PS
Sbjct: 179 KGSKESLVPQRHGPPLGE---------SVAYHSESPNSQTDVGRPLSGSGISAFVQAHPS 229
Query: 96 EGE 98
G+
Sbjct: 230 NGQ 232
>gi|122937480 Ras association (RalGDS/AF-6) domain family
(N-terminal) member 10 [Homo sapiens]
Length = 615
Score = 29.6 bits (65), Expect = 0.98
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 72 GSKQNAVTDLTAEAVNVAIAAPPSEGEANA----ELCRYLSKVLELRKSDVVLDKLCYSI 127
GS+ + A A AAPP GEA A EL R +L L++ V ++L +
Sbjct: 395 GSRPGEEPEEVAAEAEEAAAAPPLAGEAQAAALEELARRCDDLLRLQEQRVQQEELLERL 454
Query: 128 PQQLEE 133
+++E
Sbjct: 455 SAEIQE 460
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 28.9 bits (63), Expect = 1.7
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 20 SARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPV------AVDPKGCVTIAIHAKPGS 73
+A + A P A A+T + K+P P PP PV A P TIA A
Sbjct: 105 AAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAATAV 164
Query: 74 KQNAVTDLTAEAVNVAIAAPPSEGEANAELC 104
T A + S+G LC
Sbjct: 165 VAPTSTVAVAPVASALEKKTKSKGPYICALC 195
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 28.9 bits (63), Expect = 1.7
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 20 SARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPV------AVDPKGCVTIAIHAKPGS 73
+A + A P A A+T + K+P P PP PV A P TIA A
Sbjct: 105 AAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAATAV 164
Query: 74 KQNAVTDLTAEAVNVAIAAPPSEGEANAELC 104
T A + S+G LC
Sbjct: 165 VAPTSTVAVAPVASALEKKTKSKGPYICALC 195
>gi|61175224 adenosine deaminase-like isoform 2 [Homo sapiens]
Length = 267
Score = 28.9 bits (63), Expect = 1.7
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 11 LRATPNTRGSARLLCAEMPKKAGATT--KGKSQSKEPERPLPPLGPVAVDPKGCVTIAIH 68
LR+TP + M KK + +G QSK+ + +AVD +G +A
Sbjct: 104 LRSTPRRENATG-----MTKKTYVESILEGIKQSKQENLDIDVRYLIAVDRRGGPLVAKE 158
Query: 69 AKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKLCYSIP 128
+++ ++ + + ++ P+ G+A +L +LE +K+ + L IP
Sbjct: 159 TVKLAEEFFLST-EGTVLGLDLSGDPTVGQAKD----FLEPLLEAKKAGLKLALHLSEIP 213
Query: 129 QQLEETQEGVSGIPDTPCH 147
Q +ETQ + +PD H
Sbjct: 214 NQKKETQILLDLLPDRIGH 232
>gi|4885381 histone cluster 1, H1b [Homo sapiens]
Length = 226
Score = 28.9 bits (63), Expect = 1.7
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 26 AEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNA 77
A+ PKKA A K K +K P +P + P A PK A K + A
Sbjct: 171 AKSPKKAKAAAKPKKATKSPAKP-KAVKPKAAKPKAAKPKAAKPKAAKAKKA 221
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 28.9 bits (63), Expect = 1.7
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 45 PERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSE 96
P P PPL P + P+G + A H P S +AV ++E + A PS+
Sbjct: 855 PGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVAS-SSETSSRLPAPTPSD 905
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,315,768
Number of Sequences: 37866
Number of extensions: 268350
Number of successful extensions: 997
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 125
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.