Search of human proteins with 115647957

Search of human proteins with 115647957

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|115647957 torsin family 3, member A [Homo sapiens]
         (397 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|115647957 torsin family 3, member A [Homo sapiens]                 835   0.0  
gi|4557541 torsin A [Homo sapiens]                                    248   9e-66
gi|14149653 torsin family 1, member B (torsin B) [Homo sapiens]       242   4e-64
gi|145386578 torsin family 2, member A isoform a [Homo sapiens]       214   8e-56
gi|145386549 torsin family 2, member A isoform b [Homo sapiens]       126   3e-29
gi|197313700 torsin family 2, member A isoform c [Homo sapiens]       126   3e-29
gi|116063568 hypothetical protein LOC54863 [Homo sapiens]              64   3e-10
gi|13540606 caseinolytic peptidase B [Homo sapiens]                    42   0.001
gi|148612870 chromodomain helicase DNA binding protein 1-like [H...    31   1.7  
gi|205360905 testis-specific serine protease 1 [Homo sapiens]          31   2.2  
gi|223941923 OTU domain containing 1 [Homo sapiens]                    30   2.9  
gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens]      30   3.8  
gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens]      30   3.8  
gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens]      30   3.8  
gi|224549005 RNA binding motif protein 17 [Homo sapiens]               30   3.8  
gi|14249678 RNA binding motif protein 17 [Homo sapiens]                30   3.8  
gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens]             30   5.0  
gi|4758508 transmembrane protease, serine 11D [Homo sapiens]           30   5.0  
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         29   6.5  
gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens]     29   6.5  
gi|169218268 PREDICTED: similar to Serine-protein kinase ATM, pa...    29   6.5  
gi|239747580 PREDICTED: similar to NAV1 protein [Homo sapiens]         29   6.5  
gi|27262622 neuron navigator 1 [Homo sapiens]                          29   6.5  

>gi|115647957 torsin family 3, member A [Homo sapiens]
          Length = 397

 Score =  835 bits (2156), Expect = 0.0
 Identities = 397/397 (100%), Positives = 397/397 (100%)

Query: 1   MLRGPWRQLWLFFLLLLPGAPEPRGASRPWEGTDEPGSAWAWPGFQRLQEQLRAAGALSK 60
           MLRGPWRQLWLFFLLLLPGAPEPRGASRPWEGTDEPGSAWAWPGFQRLQEQLRAAGALSK
Sbjct: 1   MLRGPWRQLWLFFLLLLPGAPEPRGASRPWEGTDEPGSAWAWPGFQRLQEQLRAAGALSK 60

Query: 61  RYWTLFSCQVWPDDCDEDEEAATGPLGWRLPLLGQRYLDLLTTWYCSFKDCCPRGDCRIS 120
           RYWTLFSCQVWPDDCDEDEEAATGPLGWRLPLLGQRYLDLLTTWYCSFKDCCPRGDCRIS
Sbjct: 61  RYWTLFSCQVWPDDCDEDEEAATGPLGWRLPLLGQRYLDLLTTWYCSFKDCCPRGDCRIS 120

Query: 121 NNFTGLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNFVARML 180
           NNFTGLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNFVARML
Sbjct: 121 NNFTGLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNFVARML 180

Query: 181 VENLYRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQQLCHQTLFIFDEAEKL 240
           VENLYRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQQLCHQTLFIFDEAEKL
Sbjct: 181 VENLYRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQQLCHQTLFIFDEAEKL 240

Query: 241 HPGLLEVLGPHLERRAPEGHRAESPWTIFLFLSNLRGDIINEVVLKLLKAGWSREEITME 300
           HPGLLEVLGPHLERRAPEGHRAESPWTIFLFLSNLRGDIINEVVLKLLKAGWSREEITME
Sbjct: 241 HPGLLEVLGPHLERRAPEGHRAESPWTIFLFLSNLRGDIINEVVLKLLKAGWSREEITME 300

Query: 301 HLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVRLCARDAFLSQELLYKE 360
           HLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVRLCARDAFLSQELLYKE
Sbjct: 301 HLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVRLCARDAFLSQELLYKE 360

Query: 361 ETLDEIAQMMVYVPKEEQLFSSQGCKSISQRINYFLS 397
           ETLDEIAQMMVYVPKEEQLFSSQGCKSISQRINYFLS
Sbjct: 361 ETLDEIAQMMVYVPKEEQLFSSQGCKSISQRINYFLS 397


>gi|4557541 torsin A [Homo sapiens]
          Length = 332

 Score =  248 bits (632), Expect = 9e-66
 Identities = 122/315 (38%), Positives = 193/315 (61%), Gaps = 6/315 (1%)

Query: 82  ATGPLGWRLPLLGQRYLDLLTTWYCSFKDCCPRGDCRISNNFTGLEWDLNVRLHGQHLVQ 141
           A  P+   L L G     +    YC F +CC +   + S +   L+ DL+  L GQHL +
Sbjct: 20  AVEPISLGLALAGVLTGYIYPRLYCLFAECCGQ---KRSLSREALQKDLDDNLFGQHLAK 76

Query: 142 QLVLRTVRGYLETPQPEKALALSFHGWSGTGKNFVARMLVENLYRDGLMSDCVRMFIATF 201
           +++L  V G++  P+P+K L LS HGW+GTGKNFV++++ EN+Y  GL SD V +F+AT 
Sbjct: 77  KIILNAVFGFINNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 136

Query: 202 HFPHPKYVDLYKEQLMSQIRETQQLCHQTLFIFDEAEKLHPGLLEVLGPHLE-RRAPEGH 260
           HFPH   + LYK+QL   IR     C +++FIFDE +K+H GL++ + P L+     +G 
Sbjct: 137 HFPHASNITLYKDQLQLWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPFLDYYDLVDGV 196

Query: 261 RAESPWTIFLFLSNLRGDIINEVVLKLLKAGWSREEITMEHLEPHLQAEIVETIDNGFGH 320
             +    +F+FLSN   + I +V L   ++G  RE+I ++ +E  L   +    ++GF H
Sbjct: 197 SYQK--AMFIFLSNAGAERITDVALDFWRSGKQREDIKLKDIEHALSVSVFNNKNSGFWH 254

Query: 321 SRLVKENLIDYFIPFLPLEYRHVRLCARDAFLSQELLYKEETLDEIAQMMVYVPKEEQLF 380
           S L+  NLIDYF+PFLPLEY+H+++C R    S+     E+ +  +A+ M + PKEE++F
Sbjct: 255 SSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSRVAEEMTFFPKEERVF 314

Query: 381 SSQGCKSISQRINYF 395
           S +GCK++  +++Y+
Sbjct: 315 SDKGCKTVFTKLDYY 329


>gi|14149653 torsin family 1, member B (torsin B) [Homo sapiens]
          Length = 336

 Score =  242 bits (618), Expect = 4e-64
 Identities = 114/290 (39%), Positives = 179/290 (61%), Gaps = 4/290 (1%)

Query: 105 YCSFKDCCPRGDCRISNNFTGLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALS 164
           YC F +CC         N + L+ DL  +L GQHL  +++ + + G+     P+K L LS
Sbjct: 50  YCRFAECCRE---ERPLNASALKLDLEEKLFGQHLATEVIFKALTGFRNNKNPKKPLTLS 106

Query: 165 FHGWSGTGKNFVARMLVENLYRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQ 224
            HGW+GTGKNFV++++ ENL+  GL S+ V +F++T HFPH + + LY++QL   IR   
Sbjct: 107 LHGWAGTGKNFVSQIVAENLHPKGLKSNFVHLFVSTLHFPHEQKIKLYQDQLQKWIRGNV 166

Query: 225 QLCHQTLFIFDEAEKLHPGLLEVLGPHLERRAPEGHRAESPWTIFLFLSNLRGDIINEVV 284
             C  ++FIFDE +KLHPG+++ + P L+    +         IF+FLSN  GD+I +  
Sbjct: 167 SACANSVFIFDEMDKLHPGIIDAIKPFLD-YYEQVDGVSYRKAIFIFLSNAGGDLITKTA 225

Query: 285 LKLLKAGWSREEITMEHLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVR 344
           L   +AG  RE+I ++ LEP L   +     +G  HS L+ +NLIDYFIPFLPLEYRHV+
Sbjct: 226 LDFWRAGRKREDIQLKDLEPVLSVGVFNNKHSGLWHSGLIDKNLIDYFIPFLPLEYRHVK 285

Query: 345 LCARDAFLSQELLYKEETLDEIAQMMVYVPKEEQLFSSQGCKSISQRINY 394
           +C R    ++     E+ +  +A+ M + P++E+++S +GCK++  R+++
Sbjct: 286 MCVRAEMRARGSAIDEDIVTRVAEEMTFFPRDEKIYSDKGCKTVQSRLDF 335


>gi|145386578 torsin family 2, member A isoform a [Homo sapiens]
          Length = 321

 Score =  214 bits (546), Expect = 8e-56
 Identities = 108/290 (37%), Positives = 169/290 (58%), Gaps = 19/290 (6%)

Query: 116 DCRISNNFTGLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNF 175
           +C    +  GLE DL   L GQHL + LV++ ++ ++  P P K L LS HGW+GTGK++
Sbjct: 42  ECDFRPDLPGLECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSY 101

Query: 176 VARMLVENLYRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQQLCHQTLFIFD 235
           V+ +L   L++ GL S  V  F    HFPHP +++ YK+ L S ++     C ++LF+FD
Sbjct: 102 VSSLLAHYLFQGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFD 161

Query: 236 EAEKLHPGLLEVLGPHLERRAPEGHRAESPW---------TIFLFLSNLRGDIINEVVLK 286
           E +K+ PGL+EVL P L           S W          IF+F+SN  G+ IN+V L+
Sbjct: 162 EMDKMPPGLMEVLRPFL----------GSSWVVYGTNYRKAIFIFISNTGGEQINQVALE 211

Query: 287 LLKAGWSREEITMEHLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVRLC 346
             ++   REEI ++ LEP +   +++   +GF +S +++E L+D  +PFLPL+  HVR C
Sbjct: 212 AWRSRRDREEILLQELEPVISRAVLDNPHHGFSNSGIMEERLLDAVVPFLPLQRHHVRHC 271

Query: 347 ARDAFLSQELLYKEETLDEIAQMMVYVPKEEQLFSSQGCKSISQRINYFL 396
             +      L  ++E +  +     + P++EQLFSS GCK+++ RI +FL
Sbjct: 272 VLNELAQLGLEPRDEVVQAVLDSTTFFPEDEQLFSSNGCKTVASRIAFFL 321


>gi|145386549 torsin family 2, member A isoform b [Homo sapiens]
          Length = 253

 Score =  126 bits (317), Expect = 3e-29
 Identities = 58/137 (42%), Positives = 86/137 (62%)

Query: 116 DCRISNNFTGLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNF 175
           +C    +  GLE DL   L GQHL + LV++ ++ ++  P P K L LS HGW+GTGK++
Sbjct: 42  ECDFRPDLPGLECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSY 101

Query: 176 VARMLVENLYRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQQLCHQTLFIFD 235
           V+ +L   L++ GL S  V  F    HFPHP +++ YK+ L S ++     C ++LF+FD
Sbjct: 102 VSSLLAHYLFQGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFD 161

Query: 236 EAEKLHPGLLEVLGPHL 252
           E +K+ PGL+EVL P L
Sbjct: 162 EMDKMPPGLMEVLRPFL 178


>gi|197313700 torsin family 2, member A isoform c [Homo sapiens]
          Length = 242

 Score =  126 bits (317), Expect = 3e-29
 Identities = 58/137 (42%), Positives = 86/137 (62%)

Query: 116 DCRISNNFTGLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNF 175
           +C    +  GLE DL   L GQHL + LV++ ++ ++  P P K L LS HGW+GTGK++
Sbjct: 42  ECDFRPDLPGLECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSY 101

Query: 176 VARMLVENLYRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQQLCHQTLFIFD 235
           V+ +L   L++ GL S  V  F    HFPHP +++ YK+ L S ++     C ++LF+FD
Sbjct: 102 VSSLLAHYLFQGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFD 161

Query: 236 EAEKLHPGLLEVLGPHL 252
           E +K+ PGL+EVL P L
Sbjct: 162 EMDKMPPGLMEVLRPFL 178


>gi|116063568 hypothetical protein LOC54863 [Homo sapiens]
          Length = 423

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 67/281 (23%), Positives = 111/281 (39%), Gaps = 23/281 (8%)

Query: 125 GLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNFVARMLVENL 184
           GLE  L   + GQ      ++  +R YL T    + L L+ HG SG GK+ V R+L  + 
Sbjct: 152 GLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARHF 211

Query: 185 YRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQQLCH----QTLFIFDEAEKL 240
                 S  V  + A  H P  +     +E+L  ++ +            L + D+ E +
Sbjct: 212 RSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLDDVELM 271

Query: 241 HPGLLEVLGPHLE-RRAPEGHRAESPWTIFLFLSNLRGDIINEVVLK-------LLKAGW 292
              LL+ L   L+ +R+   H A     I++ LS   G  +   VL+       L   G+
Sbjct: 272 PRPLLDELHGFLQPQRSHHFHNA-----IYVLLSGAGGAEVTRFVLQNASRALPLRPDGF 326

Query: 293 SREEITMEHLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVRLCARDAFL 352
              E      E  L+A ++  +      SR          +PFL L+ R V  C RD   
Sbjct: 327 RSAEAAAAQAEEDLRASLLAVL------SREHPLWQAAAIVPFLLLDKRDVVSCFRDEMA 380

Query: 353 SQELLYKEETLDEIAQMMVYVPKEEQLFSSQGCKSISQRIN 393
            +     +   + +A  + +     + F+  GCK +   +N
Sbjct: 381 GEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQVVATVN 421


>gi|13540606 caseinolytic peptidase B [Homo sapiens]
          Length = 707

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 126 LEWDLNVRLHGQH----LVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNFVARMLV 181
           LE  L   + GQ      V   + R   G+ +   P   L   F G SG GK  +A+   
Sbjct: 339 LEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHP---LVFLFLGSSGIGKTELAKQTA 395

Query: 182 ENLYRDGLMSDCVRMFIATFHFPH---------PKYVDLYKEQLMSQIRETQQLCHQTLF 232
           + +++D      +R+ ++ F   H         P YV     +   Q+ +  + C   + 
Sbjct: 396 KYMHKDA-KKGFIRLDMSEFQERHEVAKFIGSPPGYVG---HEEGGQLTKKLKQCPNAVV 451

Query: 233 IFDEAEKLHPGLLEVLGPHLER---RAPEGHRAESPWTIFLFLSNLRGDIINEVVLKLLK 289
           +FDE +K HP +L ++    +       +G   +    IF+  SN+  D I +  L+L +
Sbjct: 452 LFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQ 511

Query: 290 AG--WSREEITMEHLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVRLCA 347
                SR  I     +  +  +I  TI   F      KEN+I    P L   +R      
Sbjct: 512 EALEMSRNRIAENLGDVQISDKI--TISKNF------KENVIR---PILKAHFR------ 554

Query: 348 RDAFLSQ--ELLY 358
           RD FL +  E++Y
Sbjct: 555 RDEFLGRINEIVY 567


>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
           sapiens]
          Length = 897

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 24/122 (19%)

Query: 139 LVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNFVARMLVENLYRDGLMSDCVRMFI 198
           L+Q  +LR V+  + T  P+K   + +HG S   K +         Y+  LM D     +
Sbjct: 253 LLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKY---------YKAILMKD-----L 298

Query: 199 ATFHFPHPKYVDLYKEQLMSQIRETQQLCHQTLFIFDEAEKLHPGLLEVLGPHLERRAPE 258
             F     K V L  + ++SQ+R+    C    ++FD  E   P   EV G HL   + +
Sbjct: 299 DAFENETAKKVKL--QNILSQLRK----CVDHPYLFDGVE---PEPFEV-GDHLTEASGK 348

Query: 259 GH 260
            H
Sbjct: 349 LH 350


>gi|205360905 testis-specific serine protease 1 [Homo sapiens]
          Length = 318

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 32  GTDEPGSAWAWPGFQRLQEQLRAAGALSKRYWTL-----FSCQVWPDDCD-EDEEAATGP 85
           G +     W W    RL+ + R  G+L  R W L     F    +P +   +  E  + P
Sbjct: 58  GVESARGRWPWQASLRLRRRHRCGGSLLSRRWVLSAAHCFQKHYYPSEWTVQLGELTSRP 117

Query: 86  LGWRLPLLGQRY 97
             W L     RY
Sbjct: 118 TPWNLRAYSSRY 129


>gi|223941923 OTU domain containing 1 [Homo sapiens]
          Length = 481

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 11/81 (13%)

Query: 10  WLFFLLLLPGAPEPRGASRPWEGTDEPGSAWAWPGFQRLQEQLRAAGALSKR--YWTLFS 67
           WL   LL P  PEP G     EG D            RL E  +A  A   R    T  S
Sbjct: 166 WLLEELLRPDCPEPAGLDATREGPDRN---------FRLSEHRQALAAAKHRGPAATPGS 216

Query: 68  CQVWPDDCDEDEEAATGPLGW 88
               P    E+  A  GP GW
Sbjct: 217 PDPGPGPWGEEHLAERGPRGW 237


>gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens]
          Length = 2725

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 167 GWSGTGKNFVARMLV-ENLYRDG-LMSDCV 194
           GWSGTG N V  ML  +NL  DG  ++DCV
Sbjct: 789 GWSGTGCNVVMEMLCGDNLDNDGDGLTDCV 818


>gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens]
          Length = 2731

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 167 GWSGTGKNFVARMLV-ENLYRDG-LMSDCV 194
           GWSGTG N V  ML  +NL  DG  ++DCV
Sbjct: 788 GWSGTGCNVVMEMLCGDNLDNDGDGLTDCV 817


>gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens]
          Length = 2732

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 167 GWSGTGKNFVARMLV-ENLYRDG-LMSDCV 194
           GWSGTG N V  ML  +NL  DG  ++DCV
Sbjct: 789 GWSGTGCNVVMEMLCGDNLDNDGDGLTDCV 818


>gi|224549005 RNA binding motif protein 17 [Homo sapiens]
          Length = 401

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 288 LKAGWSREEITMEHLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVRLCA 347
           LK G S ++  +    PH+ A + + + +GF    ++   L D + P  P +Y  V    
Sbjct: 57  LKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIP-LADEYDPMFPNDYEKVVKRQ 115

Query: 348 RDAFLSQELLYKEETLDE 365
           R+    Q  L +++ ++E
Sbjct: 116 REERQRQRELERQKEIEE 133


>gi|14249678 RNA binding motif protein 17 [Homo sapiens]
          Length = 401

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 288 LKAGWSREEITMEHLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVRLCA 347
           LK G S ++  +    PH+ A + + + +GF    ++   L D + P  P +Y  V    
Sbjct: 57  LKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIP-LADEYDPMFPNDYEKVVKRQ 115

Query: 348 RDAFLSQELLYKEETLDE 365
           R+    Q  L +++ ++E
Sbjct: 116 REERQRQRELERQKEIEE 133


>gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens]
          Length = 4557

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 130  LNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNFVARMLVENL 184
            ++V +H + LV +++  TV    E   PE  + L  HG+  T +N V     ++L
Sbjct: 3631 IDVVVHVEQLVHEMLQNTVTIRFENVSPEDFVGLHMHGFRRTLRNAVLTQKQDSL 3685


>gi|4758508 transmembrane protease, serine 11D [Homo sapiens]
          Length = 418

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/70 (22%), Positives = 27/70 (38%)

Query: 32  GTDEPGSAWAWPGFQRLQEQLRAAGALSKRYWTLFSCQVWPDDCDEDEEAATGPLGWRLP 91
           GT+    +W W    RL       G+L    W L +   +  + +  +  AT  +    P
Sbjct: 190 GTEAEEGSWPWQVSLRLNNAHHCGGSLINNMWILTAAHCFRSNSNPRDWIATSGISTTFP 249

Query: 92  LLGQRYLDLL 101
            L  R  ++L
Sbjct: 250 KLRMRVRNIL 259


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 17  LPGAPEPRGASRPWEGTDEPGSAWAW 42
           LPG PEP G   P  G +  GS   W
Sbjct: 574 LPGPPEPSGPVGPTAGAEAEGSGLGW 599


>gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens]
          Length = 3056

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 302  LEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVR 344
            LEPHL  +++E +   FG+ RL  E+ +   + +L LE+ +++
Sbjct: 1185 LEPHLVKKVLEKVSETFGYRRL--EDFMASHLDYLVLEWLNLQ 1225


>gi|169218268 PREDICTED: similar to Serine-protein kinase ATM, partial
            [Homo sapiens]
          Length = 2934

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 302  LEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVR 344
            LEPHL  +++E +   FG+ RL  E+ +   + +L LE+ +++
Sbjct: 1063 LEPHLVKKVLEKVSETFGYRRL--EDFMASHLDYLVLEWLNLQ 1103


>gi|239747580 PREDICTED: similar to NAV1 protein [Homo sapiens]
          Length = 559

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 23/122 (18%)

Query: 112 CPRGDCRISNNFTGLEWDLNVRLHGQHLVQQLVLRTV------RGYLETPQPEKALALSF 165
           C RG   IS +  GL+         +  V  LV  T+      + Y+      + L LS 
Sbjct: 190 CRRGVNNISVSLKGLK---------EKCVDSLVFETLIPKPMMQHYISLLLKHRRLVLS- 239

Query: 166 HGWSGTGKNFVARMLVENLY-RDGLMSDCVRMFIATF--HFPHPKYVDLYKEQLMSQI-R 221
            G SGTGK ++   L E L  R G   +     ++TF  H    K + LY   L +QI R
Sbjct: 240 -GPSGTGKTYLTNRLAEYLVERSG--REVTEGIVSTFNMHQQSCKDLQLYLSNLANQIDR 296

Query: 222 ET 223
           ET
Sbjct: 297 ET 298


>gi|27262622 neuron navigator 1 [Homo sapiens]
          Length = 1874

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 23/122 (18%)

Query: 112  CPRGDCRISNNFTGLEWDLNVRLHGQHLVQQLVLRTV------RGYLETPQPEKALALSF 165
            C RG   IS +  GL+         +  V  LV  T+      + Y+      + L LS 
Sbjct: 1505 CRRGVNNISVSLKGLK---------EKCVDSLVFETLIPKPMMQHYISLLLKHRRLVLS- 1554

Query: 166  HGWSGTGKNFVARMLVENLY-RDGLMSDCVRMFIATF--HFPHPKYVDLYKEQLMSQI-R 221
             G SGTGK ++   L E L  R G   +     ++TF  H    K + LY   L +QI R
Sbjct: 1555 -GPSGTGKTYLTNRLAEYLVERSG--REVTEGIVSTFNMHQQSCKDLQLYLSNLANQIDR 1611

Query: 222  ET 223
            ET
Sbjct: 1612 ET 1613


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.140    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,944,432
Number of Sequences: 37866
Number of extensions: 820668
Number of successful extensions: 2037
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2012
Number of HSP's gapped (non-prelim): 34
length of query: 397
length of database: 18,247,518
effective HSP length: 104
effective length of query: 293
effective length of database: 14,309,454
effective search space: 4192670022
effective search space used: 4192670022
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.