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Search of human proteins with 23308753
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23308753 ataxin 7-like 1 isoform 2 [Homo sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23308753 ataxin 7-like 1 isoform 2 [Homo sapiens] 304 2e-83
gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens] 252 7e-68
gi|189491742 ataxin 7 isoform b [Homo sapiens] 120 3e-28
gi|4506797 ataxin 7 isoform a [Homo sapiens] 120 3e-28
gi|93277115 ataxin 7-like 2 [Homo sapiens] 117 3e-27
gi|48255959 plasma membrane calcium ATPase 4 isoform 4a [Homo sa... 28 2.8
gi|48255957 plasma membrane calcium ATPase 4 isoform 4b [Homo sa... 28 2.8
gi|55743118 RAB3 GTPase-activating protein [Homo sapiens] 28 2.8
gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo sap... 28 2.8
gi|7705881 zinc finger protein 580 [Homo sapiens] 28 3.6
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 28 3.6
gi|46361970 zinc finger protein 580 [Homo sapiens] 28 3.6
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 27 6.2
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 27 6.2
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 27 6.2
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 27 6.2
gi|4503379 dihydropyrimidinase-like 3 [Homo sapiens] 27 6.2
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 27 6.2
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 27 8.0
gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo sa... 27 8.0
gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo sa... 27 8.0
gi|66880553 Fanconi anemia, complementation group A isoform a [H... 27 8.0
>gi|23308753 ataxin 7-like 1 isoform 2 [Homo sapiens]
Length = 146
Score = 304 bits (778), Expect = 2e-83
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MTSERSRIPCLSAAAAEGTGKKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSD 60
MTSERSRIPCLSAAAAEGTGKKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSD
Sbjct: 1 MTSERSRIPCLSAAAAEGTGKKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSD 60
Query: 61 NVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGR 120
NVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGR
Sbjct: 61 NVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGR 120
Query: 121 KQDNRRNEGISRSGPESSQAIEKHQV 146
KQDNRRNEGISRSGPESSQAIEKHQV
Sbjct: 121 KQDNRRNEGISRSGPESSQAIEKHQV 146
>gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens]
Length = 861
Score = 252 bits (644), Expect = 7e-68
Identities = 124/146 (84%), Positives = 127/146 (86%)
Query: 1 MTSERSRIPCLSAAAAEGTGKKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSD 60
MTSERSRIPCLSAAAAEGTGKKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSD
Sbjct: 1 MTSERSRIPCLSAAAAEGTGKKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSD 60
Query: 61 NVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGR 120
NVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHC R
Sbjct: 61 NVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCER 120
Query: 121 KQDNRRNEGISRSGPESSQAIEKHQV 146
+ + S P S+ QV
Sbjct: 121 RHGSMCRPSPSPVSPASNPRTSLVQV 146
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 120 bits (302), Expect = 3e-28
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 18 GTGKKQQEGRAMATLD--RKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSR 75
G G AMAT+ R +PSPE LG+ W+ W++A+KL D +L+E+ KE GK+R
Sbjct: 64 GPGAASTSAAAMATVGERRPLPSPEVMLGQSWNLWVEASKLPGKDGTELDESFKEFGKNR 123
Query: 76 EVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGRKQDN 124
EVM L +EDM +FG PAHDDFYLVVC+ CNQVVKPQ FQSH R+ +
Sbjct: 124 EVMGLCREDMPIFGFCPAHDDFYLVVCNDCNQVVKPQAFQSHYERRHSS 172
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 120 bits (302), Expect = 3e-28
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 18 GTGKKQQEGRAMATLD--RKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSR 75
G G AMAT+ R +PSPE LG+ W+ W++A+KL D +L+E+ KE GK+R
Sbjct: 64 GPGAASTSAAAMATVGERRPLPSPEVMLGQSWNLWVEASKLPGKDGTELDESFKEFGKNR 123
Query: 76 EVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGRKQDN 124
EVM L +EDM +FG PAHDDFYLVVC+ CNQVVKPQ FQSH R+ +
Sbjct: 124 EVMGLCREDMPIFGFCPAHDDFYLVVCNDCNQVVKPQAFQSHYERRHSS 172
>gi|93277115 ataxin 7-like 2 [Homo sapiens]
Length = 722
Score = 117 bits (293), Expect = 3e-27
Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 22 KQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRLN 81
+++ AMA L+R+VPS + F G+ WSSW++ A L +D +LEE+ K K + M L
Sbjct: 4 RERAAAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGAELEESSKNT-KKLDAMTLI 62
Query: 82 KEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGRK 121
KEDM +FGH PAHDDFYLVVC+ C+QVVKPQ FQ HC R+
Sbjct: 63 KEDMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERR 102
>gi|48255959 plasma membrane calcium ATPase 4 isoform 4a [Homo
sapiens]
Length = 1170
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 34 RKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRLNKEDMHLFG 89
R++PSP+ FL K ++ ++ + + KEGG R+V NK + L G
Sbjct: 488 RQIPSPDVFLPKVLDLIVNGISINSAYTSKILPPEKEGGLPRQVG--NKTECALLG 541
>gi|48255957 plasma membrane calcium ATPase 4 isoform 4b [Homo
sapiens]
Length = 1205
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 34 RKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRLNKEDMHLFG 89
R++PSP+ FL K ++ ++ + + KEGG R+V NK + L G
Sbjct: 488 RQIPSPDVFLPKVLDLIVNGISINSAYTSKILPPEKEGGLPRQVG--NKTECALLG 541
>gi|55743118 RAB3 GTPase-activating protein [Homo sapiens]
Length = 981
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 43 LGKPWSSWIDAAK--LHC-SDNVDLEEAGKEGGKS---REVMRLNKE 83
+GK W SW D+ + C SD +L+ G+E GK +E+ L E
Sbjct: 571 VGKSWDSWSDSEEEFFECLSDTEELKGNGQESGKKGGPKEMANLRPE 617
>gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo
sapiens]
Length = 360
Score = 28.1 bits (61), Expect = 2.8
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 14 AAAEGTGKKQQEGRAMATLDRKVPSPEA--FLGKPWSSWIDAAKLHCSDNVDLEEAGKEG 71
AA G G QQ+ + M +DR+V S E+ GK SS I A L D EE G+E
Sbjct: 2 AAERGAG--QQQSQEMMEVDRRVESEESGDEEGKKHSSGI-VADLSEQSLKDGEERGEED 58
Query: 72 GKSREVMRLNKEDMHL 87
+ + ++ E ++L
Sbjct: 59 PEEEHELPVDMETINL 74
>gi|7705881 zinc finger protein 580 [Homo sapiens]
Length = 172
Score = 27.7 bits (60), Expect = 3.6
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 65 EEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGRKQDN 124
E ++G E R+ + L H +H D C AC + K SH R +
Sbjct: 85 EPGPRKGYSCPECARVFASPLRLQSHRVSHSDLKPFTCGACGKAFKR---SSHLSRHRAT 141
Query: 125 RRNEGISRSGP 135
R +R+GP
Sbjct: 142 HR----ARAGP 148
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 27.7 bits (60), Expect = 3.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 103 SACNQVVKPQVFQSHC---------GRKQDNRRNEGISRSGPESSQAIEK 143
+AC+Q V P+ FQ HC R+Q+ R + +S G S I +
Sbjct: 2558 AACHQTVAPEPFQEHCVLDLCSAQDPREQEELRCQVLSGHGVSSRYHISE 2607
>gi|46361970 zinc finger protein 580 [Homo sapiens]
Length = 172
Score = 27.7 bits (60), Expect = 3.6
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 65 EEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGRKQDN 124
E ++G E R+ + L H +H D C AC + K SH R +
Sbjct: 85 EPGPRKGYSCPECARVFASPLRLQSHRVSHSDLKPFTCGACGKAFKR---SSHLSRHRAT 141
Query: 125 RRNEGISRSGP 135
R +R+GP
Sbjct: 142 HR----ARAGP 148
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 26.9 bits (58), Expect = 6.2
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 21 KKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRL 80
K QE + +DR ++ +P + +A +L +++ G G K+REV+
Sbjct: 4492 KTVQEYKPQKEVDRGKTVSVDYIMQPEGTIFEAEQLSLPHTLNIP--GSSGSKTREVLTN 4549
Query: 81 NKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHC---GRKQDNRRNEGISRS 133
KE + + D +L + S SHC R + +G++RS
Sbjct: 4550 IKEKLRHVQERKSELDVFLTIPSL-----------SHCKLDKRTAGKKEEQGVTRS 4594
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 26.9 bits (58), Expect = 6.2
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 21 KKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRL 80
K QE + +DR ++ +P + +A +L +++ G G K+REV+
Sbjct: 4340 KTVQEYKPQKEVDRGKTVSVDYIMQPEGTIFEAEQLSLPHTLNIP--GSSGSKTREVLTN 4397
Query: 81 NKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHC---GRKQDNRRNEGISRS 133
KE + + D +L + S SHC R + +G++RS
Sbjct: 4398 IKEKLRHVQERKSELDVFLTIPSL-----------SHCKLDKRTAGKKEEQGVTRS 4442
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 26.9 bits (58), Expect = 6.2
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 21 KKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRL 80
K QE + +DR ++ +P + +A +L +++ G G K+REV+
Sbjct: 4340 KTVQEYKPQKEVDRGKTVSVDYIMQPEGTIFEAEQLSLPHTLNIP--GSSGSKTREVLTN 4397
Query: 81 NKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHC---GRKQDNRRNEGISRS 133
KE + + D +L + S SHC R + +G++RS
Sbjct: 4398 IKEKLRHVQERKSELDVFLTIPSL-----------SHCKLDKRTAGKKEEQGVTRS 4442
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 26.9 bits (58), Expect = 6.2
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 21 KKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRL 80
K QE + +DR ++ +P + +A +L +++ G G K+REV+
Sbjct: 4340 KTVQEYKPQKEVDRGKTVSVDYIMQPEGTIFEAEQLSLPHTLNIP--GSSGSKTREVLTN 4397
Query: 81 NKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHC---GRKQDNRRNEGISRS 133
KE + + D +L + S SHC R + +G++RS
Sbjct: 4398 IKEKLRHVQERKSELDVFLTIPSL-----------SHCKLDKRTAGKKEEQGVTRS 4442
>gi|4503379 dihydropyrimidinase-like 3 [Homo sapiens]
Length = 570
Score = 26.9 bits (58), Expect = 6.2
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 17 EGTGKKQQEGRAMATLDRKVPSPEAFLG---KPWSSWIDAAKLHCSDNVDLEEAGKEGGK 73
+GT K G +D VP PE+ L + W W D K C + ++
Sbjct: 91 QGT-KAALAGGTTMIIDHVVPEPESSLTEAYEKWREWAD-GKSCCDYALHVDITHWNDSV 148
Query: 74 SREVMRLNKE-DMHLFGHYPAHDDFYLV 100
+EV L K+ ++ F Y A+ D Y V
Sbjct: 149 KQEVQNLIKDKGVNSFMVYMAYKDLYQV 176
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 26.9 bits (58), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 103 SACNQVVKPQVFQSHC 118
+AC+Q V P+ FQ HC
Sbjct: 2558 AACHQTVAPEPFQEHC 2573
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 26.6 bits (57), Expect = 8.0
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 84 DMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCGRKQDNRRNEGISRSGP 135
D+ L H+ +L +CS + V+P V+ C + G+S SGP
Sbjct: 419 DVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCW-----AQGRGLSGSGP 465
>gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo
sapiens]
Length = 1176
Score = 26.6 bits (57), Expect = 8.0
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 34 RKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRLNKEDMHLFG 89
+KVP PEA S + ++C+ + KEGG R V NK + L G
Sbjct: 498 KKVPEPEAIPPNILSYLVTGISVNCAYTSKILPPEKEGGLPRHVG--NKTECALLG 551
>gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo
sapiens]
Length = 1220
Score = 26.6 bits (57), Expect = 8.0
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 34 RKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRLNKEDMHLFG 89
+KVP PEA S + ++C+ + KEGG R V NK + L G
Sbjct: 498 KKVPEPEAIPPNILSYLVTGISVNCAYTSKILPPEKEGGLPRHVG--NKTECALLG 551
>gi|66880553 Fanconi anemia, complementation group A isoform a [Homo
sapiens]
Length = 1455
Score = 26.6 bits (57), Expect = 8.0
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 21 KKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLH 57
+K QEGR A+ SPEA P W+ AA LH
Sbjct: 1198 QKLQEGRQFAS---DFLSPEAASPAPNPDWLSAAALH 1231
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,215,356
Number of Sequences: 37866
Number of extensions: 272487
Number of successful extensions: 674
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 22
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.