Search of human proteins with 23308607

Search of human proteins with 23308607

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo
sapiens]
         (377 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo ...   751   0.0  
gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo ...   728   0.0  
gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo ...   696   0.0  
gi|30581113 minor histocompatibility antigen 13 isoform 4 [Homo ...   240   1e-63
gi|33413418 signal peptide peptidase 3 [Homo sapiens]                 110   2e-24
gi|21314755 signal peptide peptidase-like 2A [Homo sapiens]            99   6e-21
gi|116734691 signal peptide peptidase-like 2B isoform 3 [Homo sa...    86   7e-17
gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo sap...    86   7e-17
gi|38524591 intramembrane protease 5 [Homo sapiens]                    69   7e-12
gi|156105681 presenilin 2 isoform 2 [Homo sapiens]                     33   0.32 
gi|156105679 presenilin 2 isoform 1 [Homo sapiens]                     33   0.32 
gi|4506163 presenilin 1 isoform I-467 [Homo sapiens]                   32   0.94 
gi|195947397 presenilin 1 isoform I-463 [Homo sapiens]                 32   0.94 
gi|4826730 FK506 binding protein 12-rapamycin associated protein...    31   2.1  
gi|17941285 solute carrier family 5 (sodium/glucose cotransporte...    31   2.1  

>gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo
           sapiens]
          Length = 377

 Score =  751 bits (1940), Expect = 0.0
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
           MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1   MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60

Query: 61  KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
           KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61  KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120

Query: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180
           ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
Sbjct: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180

Query: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240
           HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI
Sbjct: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240

Query: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300
           KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
Sbjct: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300

Query: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTES 360
           GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTES
Sbjct: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTES 360

Query: 361 KEGTEASASKGLEKKEK 377
           KEGTEASASKGLEKKEK
Sbjct: 361 KEGTEASASKGLEKKEK 377


>gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo
           sapiens]
          Length = 426

 Score =  728 bits (1880), Expect = 0.0
 Identities = 377/426 (88%), Positives = 377/426 (88%), Gaps = 49/426 (11%)

Query: 1   MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
           MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1   MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60

Query: 61  KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
           KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61  KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120

Query: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180
           ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
Sbjct: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180

Query: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240
           HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI
Sbjct: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240

Query: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300
           KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
Sbjct: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300

Query: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFS--------------- 345
           GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFS               
Sbjct: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT 360

Query: 346 ----------------------------------YEESNPKDPAAVTESKEGTEASASKG 371
                                             YEESNPKDPAAVTESKEGTEASASKG
Sbjct: 361 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGTEASASKG 420

Query: 372 LEKKEK 377
           LEKKEK
Sbjct: 421 LEKKEK 426


>gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo
           sapiens]
          Length = 394

 Score =  696 bits (1797), Expect = 0.0
 Identities = 354/379 (93%), Positives = 360/379 (94%), Gaps = 4/379 (1%)

Query: 1   MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
           MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1   MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60

Query: 61  KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
           KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61  KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120

Query: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180
           ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
Sbjct: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180

Query: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240
           HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI
Sbjct: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240

Query: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300
           KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
Sbjct: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300

Query: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESN---PKDPAAV 357
           GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYE S    P  P   
Sbjct: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT 360

Query: 358 -TESKEGTEASASKGLEKK 375
              +  G+ AS +  +++K
Sbjct: 361 HFPTVSGSPASLADSMQQK 379


>gi|30581113 minor histocompatibility antigen 13 isoform 4 [Homo
           sapiens]
          Length = 143

 Score =  240 bits (613), Expect = 1e-63
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
           MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1   MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60

Query: 61  KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
           KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61  KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120

Query: 121 I 121
           I
Sbjct: 121 I 121


>gi|33413418 signal peptide peptidase 3 [Homo sapiens]
          Length = 384

 Score =  110 bits (275), Expect = 2e-24
 Identities = 98/378 (25%), Positives = 161/378 (42%), Gaps = 97/378 (25%)

Query: 38  SLLLMALLPIFFGALRSVRCA-----------------RGKNASDMPETITSRDAARFPI 80
           S  L+++L I +G+ RS+                     G + ++  +TI S  A   PI
Sbjct: 19  STFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDSTQALFLPI 78

Query: 81  IASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQL 140
            AS +LL ++ FF     + + ++ ++   VL  +A +  + P               Q 
Sbjct: 79  GASVSLLVMFFFF-----DSVQVVFTICTAVLATIAFAFLLLPMC-------------QY 120

Query: 141 LFTQGSGENKEEIINY----EFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNG 196
           L    S +NK   I++     F   +L+   LS ++ + ++L  HW+  +   +   +  
Sbjct: 121 LTRPCSPQNK---ISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAM 177

Query: 197 VELLHLNNVSTGCILLGGLFIYDVFWV------FGTNVMVTVAKS--------------- 235
           +  + L ++   C+LL GL IYDVFWV      F +NVMV VA                 
Sbjct: 178 IAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHL 237

Query: 236 ----------FEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFD----- 280
                        P KLVFP          ++F+MLG+GD+V+PG+ +  +LR+D     
Sbjct: 238 GPNVGRDVPRLSLPGKLVFPSS------TGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQ 291

Query: 281 -------------ISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACI 327
                        IS +    +YF+ +   Y  GL        I + AQPALLYLVP  +
Sbjct: 292 ASGDSCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTL 351

Query: 328 GFPVLVALAKGEVTEMFS 345
              + +A  KG++  M+S
Sbjct: 352 LPLLTMAYLKGDLRRMWS 369


>gi|21314755 signal peptide peptidase-like 2A [Homo sapiens]
          Length = 520

 Score = 99.0 bits (245), Expect = 6e-21
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 47/307 (15%)

Query: 78  FPIIASCTLLGLYLFFK--IFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPN 135
           F +I    ++ LY F+K  ++    I  + S       + AL H I P+          N
Sbjct: 226 FVVICCVMMVLLYFFYKWLVYVMIAIFCIASAMSLYNCLAALIHKI-PYGQCTIACRGKN 284

Query: 136 RQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRKH----WIANNLFGLA 191
            + +L+F  G                  +C+   ++  VW + R      WI  ++ G+A
Sbjct: 285 MEVRLIFLSG------------------LCI---AVAVVWAVFRNEDRWAWILQDILGIA 323

Query: 192 FSLNGVELLHLNNVSTGCILLGGLFIYDVFWVF--------GTNVMVTVA-----KSFEA 238
           F LN ++ L L N  +  ILLG L +YDVF+VF        G ++MV +A      + + 
Sbjct: 324 FCLNLIKTLKLPNFKSCVILLGLLLLYDVFFVFITPFITKNGESIMVELAAGPFGNNEKL 383

Query: 239 PIKLVFPQDLLEKGLEA--NNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFA 296
           P+ +  P+ +    +       ++LG GD+++PG+ IA   RFD+    +++ Y+ +S  
Sbjct: 384 PVVIRVPKLIYFSVMSVCLMPVSILGFGDIIVPGLLIAYCRRFDVQ-TGSSYIYYVSSTV 442

Query: 297 AYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMF---SYEESNPKD 353
           AY  G+ LT  ++ + K  QPALLYLVP  +    +VA  + E+ + +   SY+  +  D
Sbjct: 443 AYAIGMILTFVVLVLMKKGQPALLYLVPCTLITASVVAWRRKEMKKFWKGNSYQMMDHLD 502

Query: 354 PAAVTES 360
            A   E+
Sbjct: 503 CATNEEN 509


>gi|116734691 signal peptide peptidase-like 2B isoform 3 [Homo
           sapiens]
          Length = 511

 Score = 85.5 bits (210), Expect = 7e-17
 Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 24/198 (12%)

Query: 163 LVCLGLSSIVGVWYLLRKH----WIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIY 218
           L C+ +S    VW + R      W+  +  G+AF L  ++ + L       +LL  LF+Y
Sbjct: 302 LFCVAVSV---VWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKACTLLLLVLFLY 358

Query: 219 DVFWVF--------GTNVMVTVAKS-------FEAPIKLVFPQ-DLLEKGLEANNFAMLG 262
           D+F+VF        G+++MV VA          + P+ L  P+ +     L    F++LG
Sbjct: 359 DIFFVFITPFLTKSGSSIMVEVATGPSDSATREKLPMVLKVPRLNSSPLALCDRPFSLLG 418

Query: 263 LGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYL 322
            GD+++PG+ +A   RFDI ++ ++  YF     AY  GL +T   + + +  QPALLYL
Sbjct: 419 FGDILVPGLLVAYCHRFDIQVQ-SSRVYFVACTIAYGVGLLVTFVALALMQRGQPALLYL 477

Query: 323 VPACIGFPVLVALAKGEV 340
           VP  +     VAL + E+
Sbjct: 478 VPCTLVTSCAVALWRREL 495


>gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo
           sapiens]
          Length = 592

 Score = 85.5 bits (210), Expect = 7e-17
 Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 24/198 (12%)

Query: 163 LVCLGLSSIVGVWYLLRKH----WIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIY 218
           L C+ +S    VW + R      W+  +  G+AF L  ++ + L       +LL  LF+Y
Sbjct: 302 LFCVAVSV---VWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKACTLLLLVLFLY 358

Query: 219 DVFWVF--------GTNVMVTVAKS-------FEAPIKLVFPQ-DLLEKGLEANNFAMLG 262
           D+F+VF        G+++MV VA          + P+ L  P+ +     L    F++LG
Sbjct: 359 DIFFVFITPFLTKSGSSIMVEVATGPSDSATREKLPMVLKVPRLNSSPLALCDRPFSLLG 418

Query: 263 LGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYL 322
            GD+++PG+ +A   RFDI ++ ++  YF     AY  GL +T   + + +  QPALLYL
Sbjct: 419 FGDILVPGLLVAYCHRFDIQVQ-SSRVYFVACTIAYGVGLLVTFVALALMQRGQPALLYL 477

Query: 323 VPACIGFPVLVALAKGEV 340
           VP  +     VAL + E+
Sbjct: 478 VPCTLVTSCAVALWRREL 495


>gi|38524591 intramembrane protease 5 [Homo sapiens]
          Length = 684

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 21/193 (10%)

Query: 169 SSIVGVWYLLRKH----WIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVF 224
           ++++  W   R      W+  +  G+++ L  +  + L  +      L  L  +DVF+VF
Sbjct: 332 ATVIIFWVAYRNEDRWAWLLQDTLGISYCLFVLHRVRLPTLKNCSSFLLALLAFDVFFVF 391

Query: 225 GTNVMVTVAKSFEAPIKLVFPQDLLEKGLE----------------ANNFAMLGLGDVVI 268
            T       +S  A + L   +    + L                 +  F++LG GD+V+
Sbjct: 392 VTPFFTKTGESIMAQVALGPAESSSHERLPMVLKVPRLRVSALTLCSQPFSILGFGDIVV 451

Query: 269 PGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIG 328
           PG  +A   RFD+ +      YF     AY  GL +T   M + +  QPALLYLV + + 
Sbjct: 452 PGFLVAYCCRFDVQVCSR-QIYFVACTVAYAVGLLVTFMAMVLMQMGQPALLYLVSSTLL 510

Query: 329 FPVLVALAKGEVT 341
             + VA  + E++
Sbjct: 511 TSLAVAACRQELS 523


>gi|156105681 presenilin 2 isoform 2 [Homo sapiens]
          Length = 447

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 236 FEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSF 295
           FE P+   +P + LE+  E      LGLGD     IF ++L+    +            F
Sbjct: 339 FEPPLT-GYPGEELEE--EEERGVKLGLGDF----IFYSVLVGKAAATGSGDWNTTLACF 391

Query: 296 AAYIFGLGLTIFIMHIFKHAQPAL 319
            A + GL LT+ ++ +FK A PAL
Sbjct: 392 VAILIGLCLTLLLLAVFKKALPAL 415


>gi|156105679 presenilin 2 isoform 1 [Homo sapiens]
          Length = 448

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 236 FEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSF 295
           FE P+   +P + LE+  E      LGLGD     IF ++L+    +            F
Sbjct: 340 FEPPLT-GYPGEELEE--EEERGVKLGLGDF----IFYSVLVGKAAATGSGDWNTTLACF 392

Query: 296 AAYIFGLGLTIFIMHIFKHAQPAL 319
            A + GL LT+ ++ +FK A PAL
Sbjct: 393 VAILIGLCLTLLLLAVFKKALPAL 416


>gi|4506163 presenilin 1 isoform I-467 [Homo sapiens]
          Length = 467

 Score = 32.0 bits (71), Expect = 0.94
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
           LGLGD     IF ++L+    +            F A + GL LT+ ++ IFK A PAL 
Sbjct: 381 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 435

Query: 321 YLVPACIGFPVLVALAKGEVTEMF 344
              P  I F ++   A   + + F
Sbjct: 436 ---PISITFGLVFYFATDYLVQPF 456


>gi|195947397 presenilin 1 isoform I-463 [Homo sapiens]
          Length = 463

 Score = 32.0 bits (71), Expect = 0.94
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
           LGLGD     IF ++L+    +            F A + GL LT+ ++ IFK A PAL 
Sbjct: 377 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 431

Query: 321 YLVPACIGFPVLVALAKGEVTEMF 344
              P  I F ++   A   + + F
Sbjct: 432 ---PISITFGLVFYFATDYLVQPF 452


>gi|4826730 FK506 binding protein 12-rapamycin associated protein 1
            [Homo sapiens]
          Length = 2549

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 3    SALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKN 62
            +A ++  N  +EA    NS T P    + +       LLM  +P   G  RS+  +RG N
Sbjct: 1841 TASTEGSNSESEAESTENSPT-PSPLQKKVTEDLSKTLLMYTVPAVQGFFRSISLSRGNN 1899

Query: 63   ASDMPETIT 71
              D    +T
Sbjct: 1900 LQDTLRVLT 1908


>gi|17941285 solute carrier family 5 (sodium/glucose cotransporter),
           member 11 [Homo sapiens]
          Length = 675

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 20/91 (21%)

Query: 38  SLLLMA--LLPIFFGALRSVRCARGKNASDMPETITSR-DAARFPIIASCTLLGLYLFFK 94
           S+L++A   LPI+               + MPE +  R    R PII +   L +Y+F K
Sbjct: 108 SVLMLAWIFLPIYIAG----------QVTTMPEYLRKRFGGIRIPIILAVLYLFIYIFTK 157

Query: 95  IFSQEYI-------NLLLSMYFFVLGILALS 118
           I    Y        +L L +Y  ++G+LA++
Sbjct: 158 ISVDMYAGAIFIQQSLHLDLYLAIVGLLAIT 188


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,620,281
Number of Sequences: 37866
Number of extensions: 577190
Number of successful extensions: 1773
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1748
Number of HSP's gapped (non-prelim): 19
length of query: 377
length of database: 18,247,518
effective HSP length: 104
effective length of query: 273
effective length of database: 14,309,454
effective search space: 3906480942
effective search space used: 3906480942
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.