Search of human proteins with 23097238

Search of human proteins with 23097238

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23097238 carbohydrate sulfotransferase 13 [Homo sapiens]
         (341 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23097238 carbohydrate sulfotransferase 13 [Homo sapiens]           691   0.0  
gi|8923758 carbohydrate sulfotransferase 11 [Homo sapiens]            321   5e-88
gi|189217888 carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...   178   5e-45
gi|189217886 carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...   178   5e-45
gi|20127609 carbohydrate (N-acetylgalactosamine 4-0) sulfotransf...   178   5e-45
gi|8922112 carbohydrate sulfotransferase 12 [Homo sapiens]            176   2e-44
gi|116235458 GalNAc-4-sulfotransferase 2 [Homo sapiens]               170   2e-42
gi|18497304 dermatan 4 sulfotransferase 1 [Homo sapiens]              158   6e-39
gi|4758540 HNK-1 sulfotransferase [Homo sapiens]                      135   5e-32
gi|224282178 GDNF family receptor alpha 1 isoform b preproprotei...    29   6.9  
gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein...    29   6.9  
gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein ...    29   6.9  
gi|36951034 G protein-coupled receptor 78 [Homo sapiens]               29   6.9  
gi|41281805 regulator of G-protein signaling 20 isoform a [Homo ...    29   6.9  
gi|48255918 RAR-related orphan receptor C isoform b [Homo sapiens]     28   9.1  
gi|19743909 RAR-related orphan receptor C isoform a [Homo sapiens]     28   9.1  
gi|239756146 PREDICTED: hypothetical protein XP_002344838 [Homo ...    28   9.1  
gi|239750697 PREDICTED: hypothetical protein [Homo sapiens]            28   9.1  
gi|239745005 PREDICTED: hypothetical protein XP_002343329 [Homo ...    28   9.1  

>gi|23097238 carbohydrate sulfotransferase 13 [Homo sapiens]
          Length = 341

 Score =  691 bits (1783), Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MGRRCCRRRVLAAACLGAALLLLCAAPRSLRPAFGNRALGSSWLGGEKRSPLQKLYDLDQ 60
           MGRRCCRRRVLAAACLGAALLLLCAAPRSLRPAFGNRALGSSWLGGEKRSPLQKLYDLDQ
Sbjct: 1   MGRRCCRRRVLAAACLGAALLLLCAAPRSLRPAFGNRALGSSWLGGEKRSPLQKLYDLDQ 60

Query: 61  DPRSTLAKVHRQRRDLLNSACSRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNW 120
           DPRSTLAKVHRQRRDLLNSACSRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNW
Sbjct: 61  DPRSTLAKVHRQRRDLLNSACSRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNW 120

Query: 121 KRVLLALSGQARGDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERL 180
           KRVLLALSGQARGDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERL
Sbjct: 121 KRVLLALSGQARGDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERL 180

Query: 181 ASAYRNKLARPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRRE 240
           ASAYRNKLARPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRRE
Sbjct: 181 ASAYRNKLARPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRRE 240

Query: 241 EPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGASDLSFPGPPRPRGAAAS 300
           EPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGASDLSFPGPPRPRGAAAS
Sbjct: 241 EPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGASDLSFPGPPRPRGAAAS 300

Query: 301 RDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAPSYLRLL 341
           RDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAPSYLRLL
Sbjct: 301 RDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAPSYLRLL 341


>gi|8923758 carbohydrate sulfotransferase 11 [Homo sapiens]
          Length = 352

 Score =  321 bits (823), Expect = 5e-88
 Identities = 163/346 (47%), Positives = 229/346 (66%), Gaps = 11/346 (3%)

Query: 1   MGRRCCRRRVLAAACLGAALLLLCAAPRSLRPAFGNRALGSSWLGGE-KRSPLQKLYDLD 59
           M R C   R++ A CLG+ +L++      L P       G      +  RSPLQ+LY+  
Sbjct: 11  MNRIC---RMVLATCLGSFILVIFYFQSMLHPVMRRNPFGVDICCRKGSRSPLQELYNPI 67

Query: 60  QDPRSTLAKVHRQRRDLLNSAC---SRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVA 116
           Q   S  A +H+ RRD +   C   S  SR++R+L P DL+H++VD+ H L+YCYVPKVA
Sbjct: 68  QLELSNTAVLHQMRRDQVTDTCRANSATSRKRRVLTPNDLKHLVVDEDHELIYCYVPKVA 127

Query: 117 CTNWKRVLLALSGQAR-GDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVRE 175
           CTNWKR+++ L+G+ +  DP  I A EAH    L +L  +S  EIN RL++Y+ FLFVRE
Sbjct: 128 CTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVRE 187

Query: 176 PFERLASAYRNKLARPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDP 235
           PFERL SAYRNK  + Y+ +F +RYG +I++R R  A  +A  +G DV+F EF+AYL+DP
Sbjct: 188 PFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDP 247

Query: 236 RTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAG-ASDLSFPGPPRP 294
            T+REEPFNEHW+  ++LCHPC + YD+VGK+ETL ED+ +VL LAG  S L F  P   
Sbjct: 248 HTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKF--PTYA 305

Query: 295 RGAAASRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAPSYLRL 340
           +    + ++    F++IS  +Q +L+++YK+DFL+FNYS PSYL+L
Sbjct: 306 KSTRTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVPSYLKL 351


>gi|189217888 carbohydrate (N-acetylgalactosamine 4-0)
           sulfotransferase 8 [Homo sapiens]
          Length = 424

 Score =  178 bits (452), Expect = 5e-45
 Identities = 104/276 (37%), Positives = 150/276 (54%), Gaps = 9/276 (3%)

Query: 65  TLAKVHRQRRDLLNSACSRH--SRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKR 122
           +L +  ++R+ ++  AC+++  S  +R + P  +  + V+D H +LYC VPK  C+NWKR
Sbjct: 148 SLHRSQQERKRVMQEACAKYRASSSRRAVTPRHVSRIFVEDRHRVLYCEVPKAGCSNWKR 207

Query: 123 VLLALSGQARGDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLAS 182
           VL+ L+G A      I     H    L  L  F    I  RL  Y   LFVREPFERL S
Sbjct: 208 VLMVLAGLA-SSTADIQHNTVHYGSALKRLDTFDRQGILHRLSTYTKMLFVREPFERLVS 266

Query: 183 AYRNKLARPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRREEP 242
           A+R+K   P ++ +   +G  I+ R R  A  +A   G  VRF EF+ YLLD    R   
Sbjct: 267 AFRDKFEHP-NSYYHPVFGKAILARYRANASREALRTGSGVRFPEFVQYLLD--VHRPVG 323

Query: 243 FNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGA-SDLSFP--GPPRPRGAAA 299
            + HW+    LC PC + YD VGKFE++ +DA F L L  A  +L+FP       + A  
Sbjct: 324 MDIHWDHVSRLCSPCLIDYDFVGKFESMEDDANFFLSLIRAPRNLTFPRFKDRHSQEART 383

Query: 300 SRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAP 335
           +  +A + F  +S   ++R +D Y MD+L+FNYS P
Sbjct: 384 TARIAHQYFAQLSALQRQRTYDFYYMDYLMFNYSKP 419


>gi|189217886 carbohydrate (N-acetylgalactosamine 4-0)
           sulfotransferase 8 [Homo sapiens]
          Length = 424

 Score =  178 bits (452), Expect = 5e-45
 Identities = 104/276 (37%), Positives = 150/276 (54%), Gaps = 9/276 (3%)

Query: 65  TLAKVHRQRRDLLNSACSRH--SRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKR 122
           +L +  ++R+ ++  AC+++  S  +R + P  +  + V+D H +LYC VPK  C+NWKR
Sbjct: 148 SLHRSQQERKRVMQEACAKYRASSSRRAVTPRHVSRIFVEDRHRVLYCEVPKAGCSNWKR 207

Query: 123 VLLALSGQARGDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLAS 182
           VL+ L+G A      I     H    L  L  F    I  RL  Y   LFVREPFERL S
Sbjct: 208 VLMVLAGLA-SSTADIQHNTVHYGSALKRLDTFDRQGILHRLSTYTKMLFVREPFERLVS 266

Query: 183 AYRNKLARPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRREEP 242
           A+R+K   P ++ +   +G  I+ R R  A  +A   G  VRF EF+ YLLD    R   
Sbjct: 267 AFRDKFEHP-NSYYHPVFGKAILARYRANASREALRTGSGVRFPEFVQYLLD--VHRPVG 323

Query: 243 FNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGA-SDLSFP--GPPRPRGAAA 299
            + HW+    LC PC + YD VGKFE++ +DA F L L  A  +L+FP       + A  
Sbjct: 324 MDIHWDHVSRLCSPCLIDYDFVGKFESMEDDANFFLSLIRAPRNLTFPRFKDRHSQEART 383

Query: 300 SRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAP 335
           +  +A + F  +S   ++R +D Y MD+L+FNYS P
Sbjct: 384 TARIAHQYFAQLSALQRQRTYDFYYMDYLMFNYSKP 419


>gi|20127609 carbohydrate (N-acetylgalactosamine 4-0)
           sulfotransferase 8 [Homo sapiens]
          Length = 424

 Score =  178 bits (452), Expect = 5e-45
 Identities = 104/276 (37%), Positives = 150/276 (54%), Gaps = 9/276 (3%)

Query: 65  TLAKVHRQRRDLLNSACSRH--SRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKR 122
           +L +  ++R+ ++  AC+++  S  +R + P  +  + V+D H +LYC VPK  C+NWKR
Sbjct: 148 SLHRSQQERKRVMQEACAKYRASSSRRAVTPRHVSRIFVEDRHRVLYCEVPKAGCSNWKR 207

Query: 123 VLLALSGQARGDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLAS 182
           VL+ L+G A      I     H    L  L  F    I  RL  Y   LFVREPFERL S
Sbjct: 208 VLMVLAGLA-SSTADIQHNTVHYGSALKRLDTFDRQGILHRLSTYTKMLFVREPFERLVS 266

Query: 183 AYRNKLARPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRREEP 242
           A+R+K   P ++ +   +G  I+ R R  A  +A   G  VRF EF+ YLLD    R   
Sbjct: 267 AFRDKFEHP-NSYYHPVFGKAILARYRANASREALRTGSGVRFPEFVQYLLD--VHRPVG 323

Query: 243 FNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGA-SDLSFP--GPPRPRGAAA 299
            + HW+    LC PC + YD VGKFE++ +DA F L L  A  +L+FP       + A  
Sbjct: 324 MDIHWDHVSRLCSPCLIDYDFVGKFESMEDDANFFLSLIRAPRNLTFPRFKDRHSQEART 383

Query: 300 SRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAP 335
           +  +A + F  +S   ++R +D Y MD+L+FNYS P
Sbjct: 384 TARIAHQYFAQLSALQRQRTYDFYYMDYLMFNYSKP 419


>gi|8922112 carbohydrate sulfotransferase 12 [Homo sapiens]
          Length = 414

 Score =  176 bits (447), Expect = 2e-44
 Identities = 112/293 (38%), Positives = 156/293 (53%), Gaps = 30/293 (10%)

Query: 72  QRRDLLNSACSRHS----RRQRLLQP---EDLRHVLVDDAHGLLYCYVPKVACTNWKRVL 124
           +RR +L   C+  S     ++R        +L H++VDD HG +YCYVPKVACTNWKRV+
Sbjct: 123 ERRSVLRGFCANSSLAFPTKERAFDDIPNSELSHLIVDDRHGAIYCYVPKVACTNWKRVM 182

Query: 125 LALSGQA--RG----DPRAISAQEAHAPGRLPSLADF-------SPAEINRRLRAYLAFL 171
           + LSG    RG    DP  I  +  H      +   F       S   +  +L+ Y  FL
Sbjct: 183 IVLSGSLLHRGAPYRDPLRIPREHVHNASAHLTFNKFWRRYGKLSRHLMKVKLKKYTKFL 242

Query: 172 FVREPFERLASAYRNKLARPYSAAFQRRYGARIVQRLR-----PRALPDARARGHDVRFA 226
           FVR+PF RL SA+R+K     +  F R++   +++        P +  +A   G  V FA
Sbjct: 243 FVRDPFVRLISAFRSKFELE-NEEFYRKFAVPMLRLYANHTSLPASAREAFRAGLKVSFA 301

Query: 227 EFLAYLLDPRTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGAS-D 285
            F+ YLLDP T +  PFNEHW + + LCHPC++ YD VGK ETL EDAA +L L      
Sbjct: 302 NFIQYLLDPHTEKLAPFNEHWRQVYRLCHPCQIDYDFVGKLETLDEDAAQLLQLLQVDRQ 361

Query: 286 LSFPGPPRPRGAAASRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAPSYL 338
           L FP   R R A++  +     F  I   ++++L+ LY+ DF+LF Y  P  L
Sbjct: 362 LRFPPSYRNRTASSWEE---DWFAKIPLAWRQQLYKLYEADFVLFGYPKPENL 411


>gi|116235458 GalNAc-4-sulfotransferase 2 [Homo sapiens]
          Length = 443

 Score =  170 bits (430), Expect = 2e-42
 Identities = 103/291 (35%), Positives = 150/291 (51%), Gaps = 12/291 (4%)

Query: 51  PLQKLYDLDQDPRSTLAKVHRQRRDLLNSACSRH---SRRQRLLQPEDLRHVLVDDAHGL 107
           PL K    D   + T  +   +RR  L   C ++   S  Q  L    +  + V+D H +
Sbjct: 157 PLNKSLVKDNKWKKT-EETQEKRRSFLQEFCKKYGGVSHHQSHLF-HTVSRIYVEDKHKI 214

Query: 108 LYCYVPKVACTNWKRVLLALSGQARGDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAY 167
           LYC VPK  C+NWKR+L+ L+G A      IS    H    L  L  F    I  RL  Y
Sbjct: 215 LYCEVPKAGCSNWKRILMVLNGLA-SSAYNISHNAVHYGKHLKKLDSFDLKGIYTRLNTY 273

Query: 168 LAFLFVREPFERLASAYRNKLARPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAE 227
              +FVR+P ERL SA+R+K   P S  +   +G  I+++ RP A  +A   G  V+F E
Sbjct: 274 TKAVFVRDPMERLVSAFRDKFEHPNSY-YHPVFGKAIIKKYRPNACEEALINGSGVKFKE 332

Query: 228 FLAYLLDPRTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGA-SDL 286
           F+ YLLD  + R    + HWE+   LC+PC + YD VGKFETL EDA + L + GA  +L
Sbjct: 333 FIHYLLD--SHRPVGMDIHWEKVSKLCYPCLINYDFVGKFETLEEDANYFLQMIGAPKEL 390

Query: 287 SFPG--PPRPRGAAASRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAP 335
            FP            +  +  +  +D++   ++ ++D Y +D+L+FNY+ P
Sbjct: 391 KFPNFKDRHSSDERTNAQVVRQYLKDLTRTERQLIYDFYYLDYLMFNYTTP 441


>gi|18497304 dermatan 4 sulfotransferase 1 [Homo sapiens]
          Length = 376

 Score =  158 bits (400), Expect = 6e-39
 Identities = 108/249 (43%), Positives = 128/249 (51%), Gaps = 26/249 (10%)

Query: 96  LRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISAQEAHAPGRLPSLADF 155
           LRH+LV D +  LYCYVPKVAC+NWKRV+  L+G    D   +  +  H    L  LAD 
Sbjct: 138 LRHILVSDRYRFLYCYVPKVACSNWKRVMKVLAGVL--DSVDVRLKMDHR-SDLVFLADL 194

Query: 156 SPAEINRRLRAYLAFLFVREPFERLASAYRNKLARPYSAAFQRRYGARIVQRLRPRALPD 215
            P EI  RL+ Y  FLFVREP ERL SAYRNK        +Q+RYGA IV+R R  A P 
Sbjct: 195 RPEEIRYRLQHYFKFLFVREPLERLLSAYRNKFGE--IREYQQRYGAEIVRRYRAGAGPS 252

Query: 216 ARARGHDVRFAEFLAYLLDPRTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAA 275
               G DV F EFL YL+D    R    NEHW   + LC PC + YD VG +E L  DA 
Sbjct: 253 --PAGDDVTFPEFLRYLVDEDPER---MNEHWMPVYHLCQPCAVHYDFVGSYERLEADAN 307

Query: 276 FVLGLAGA-SDLSFPG------PPRPRGAAASRDLAAR-LFRDISPFYQRRLFDLYKMDF 327
            VL    A   + FP       P  P         A R L +D+ P         Y +DF
Sbjct: 308 QVLEWVRAPPHVRFPARQAWYRPASPESLHYHLCSAPRALLQDVLP--------KYILDF 359

Query: 328 LLFNYSAPS 336
            LF Y  P+
Sbjct: 360 SLFAYPLPN 368


>gi|4758540 HNK-1 sulfotransferase [Homo sapiens]
          Length = 356

 Score =  135 bits (340), Expect = 5e-32
 Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 17/281 (6%)

Query: 69  VHRQRRDLLNSACSRHSRRQRLLQPED---LRHVLVDDAHGLLYCYVPKVACTNWKRVLL 125
           V+ +R +L+ + C   + +     P     L  + V D H +L+C  PKV  T WK+VL+
Sbjct: 80  VYMERLELIRNVCRDDALKNLSHTPVSKFVLDRIFVCDKHKILFCQTPKVGNTQWKKVLI 139

Query: 126 ALSGQARG-DPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLASAY 184
            L+G     +    +    H    LP L+ FS AEI +RL+ Y  F  VR+PFERL SA+
Sbjct: 140 VLNGAFSSIEEIPENVVHDHEKNGLPRLSSFSDAEIQKRLKTYFKFFIVRDPFERLISAF 199

Query: 185 RNKLAR--PYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTR-REE 241
           ++K      +   ++      I+++ R       R     ++F +F+ YL DP  R  + 
Sbjct: 200 KDKFVHNPRFEPWYRHEIAPGIIRKYRRN-----RTETRGIQFEDFVRYLGDPNHRWLDL 254

Query: 242 PFNE---HWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGASDL-SFPGPPRPRGA 297
            F +   HW     LC PC + Y V+G  ETL +DA ++L  AG   L S+P  P P   
Sbjct: 255 QFGDHIIHWVTYVELCAPCEIMYSVIGHHETLEDDAPYILKEAGIDHLVSYPTIP-PGIT 313

Query: 298 AASRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAPSYL 338
             +R      F  IS    RRL+  ++ DF LF Y  P +L
Sbjct: 314 VYNRTKVEHYFLGISKRDIRRLYARFEGDFKLFGYQKPDFL 354


>gi|224282178 GDNF family receptor alpha 1 isoform b preproprotein
           [Homo sapiens]
          Length = 460

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 78  NSACSRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKR--VLLALSGQARGDP 135
           N  C+R    + L Q  D   V    ++G+L+C    +ACT  +R  ++   S + R  P
Sbjct: 179 NDVCNRRKCHKALRQFFD--KVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREKP 236

Query: 136 RAISAQEA 143
             ++ Q++
Sbjct: 237 NCLNLQDS 244


>gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein
           [Homo sapiens]
          Length = 460

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 78  NSACSRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKR--VLLALSGQARGDP 135
           N  C+R    + L Q  D   V    ++G+L+C    +ACT  +R  ++   S + R  P
Sbjct: 179 NDVCNRRKCHKALRQFFD--KVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREKP 236

Query: 136 RAISAQEA 143
             ++ Q++
Sbjct: 237 NCLNLQDS 244


>gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein
           [Homo sapiens]
          Length = 465

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 78  NSACSRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKR--VLLALSGQARGDP 135
           N  C+R    + L Q  D   V    ++G+L+C    +ACT  +R  ++   S + R  P
Sbjct: 184 NDVCNRRKCHKALRQFFD--KVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREKP 241

Query: 136 RAISAQEA 143
             ++ Q++
Sbjct: 242 NCLNLQDS 249


>gi|36951034 G protein-coupled receptor 78 [Homo sapiens]
          Length = 363

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 18  AALLLLCAAPRSLRPAFGNRALGSSWLG 45
           A LLL CA  +SL  AF   ALG SWLG
Sbjct: 123 AGLLLGCAWGQSL--AFSGAALGCSWLG 148


>gi|41281805 regulator of G-protein signaling 20 isoform a [Homo
           sapiens]
          Length = 388

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 149 LPSLADFSPAEINRRLRAYLAFLFVREPFERLASAYRNKLARPYSAAFQRRYGARIVQRL 208
           +P +  F PA++     A   F  +  P   LA  + + L RP   A +RR        L
Sbjct: 51  VPDIKSFPPAQLPDSPAAPKLFGLLSSPLSSLARFFSHLLRRPPPEAPRRRLD---FSPL 107

Query: 209 RPRALPDAR-ARGHD 222
            P ALP AR +RGH+
Sbjct: 108 LP-ALPAARLSRGHE 121


>gi|48255918 RAR-related orphan receptor C isoform b [Homo sapiens]
          Length = 497

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 47  EKRSPLQKLYDLDQDPRSTLAKVHRQR-------RDLLNSACSRHSRRQRLLQPEDLRHV 99
           EKR   Q  Y+L+      L K HRQ        +  L S CS+H  R ++ Q   L  +
Sbjct: 414 EKRKVEQLQYNLELAFHHHLCKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQ--HLHPI 471

Query: 100 LVDDAHGLLY 109
           +V  A   LY
Sbjct: 472 VVQAAFPPLY 481


>gi|19743909 RAR-related orphan receptor C isoform a [Homo sapiens]
          Length = 518

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 47  EKRSPLQKLYDLDQDPRSTLAKVHRQR-------RDLLNSACSRHSRRQRLLQPEDLRHV 99
           EKR   Q  Y+L+      L K HRQ        +  L S CS+H  R ++ Q   L  +
Sbjct: 435 EKRKVEQLQYNLELAFHHHLCKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQ--HLHPI 492

Query: 100 LVDDAHGLLY 109
           +V  A   LY
Sbjct: 493 VVQAAFPPLY 502


>gi|239756146 PREDICTED: hypothetical protein XP_002344838 [Homo
           sapiens]
          Length = 86

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 83  RHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISAQE 142
           R     R   PE+L HV +  A G   C++P+    +W+       G++ G   A +   
Sbjct: 25  RREESSRAGPPEELGHVGLLWALGARGCFIPEGPSESWRG-----HGESAGVLPATAEPS 79

Query: 143 AHAPG 147
           A APG
Sbjct: 80  AQAPG 84


>gi|239750697 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 83  RHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISAQE 142
           R     R   PE+L HV +  A G   C++P+    +W+       G++ G   A +   
Sbjct: 25  RREESSRAGPPEELGHVGLLWALGARGCFIPEGPSESWRG-----HGESAGVLPATAEPS 79

Query: 143 AHAPG 147
           A APG
Sbjct: 80  AQAPG 84


>gi|239745005 PREDICTED: hypothetical protein XP_002343329 [Homo
           sapiens]
          Length = 86

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 83  RHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISAQE 142
           R     R   PE+L HV +  A G   C++P+    +W+       G++ G   A +   
Sbjct: 25  RREESSRAGPPEELGHVGLLWALGARGCFIPEGPSESWRG-----HGESAGVLPATAEPS 79

Query: 143 AHAPG 147
           A APG
Sbjct: 80  AQAPG 84


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,079,403
Number of Sequences: 37866
Number of extensions: 654575
Number of successful extensions: 2445
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2406
Number of HSP's gapped (non-prelim): 20
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.