Guide to the Human Genome
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Name: C4orf23 Sequence: fasta or formatted (365aa) NCBI GI: 22749135
Description:

hypothetical protein LOC152992 isoform 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         25           2
 C cysteine            4.4         16           2
 D aspartate           4.9         18           1
 E glutamate           6.3         23           2
 F phenylalanine       4.1         15           2
 G glycine             7.1         26           2
 H histidine           2.7         10           2
 I isoleucine          3.0         11           1
 K lysine              4.9         18           2
 L leucine             8.8         32           3
 M methionine          0.5          2           1
 N asparagine          3.0         11           1
 P proline             6.8         25           2
 Q glutamine           4.4         16           2
 R arginine            9.3         34           2
 S serine              6.6         24           2
 T threonine           5.8         21           2
 V valine              5.8         21           2
 W tryptophan          2.7         10           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC152992 isoform 2 
LOC729506             0.009   PREDICTED: hypothetical protein 
LOC729506             0.009   PREDICTED: hypothetical protein 
LOC729506             0.009   PREDICTED: hypothetical protein 
LOC100293867          0.009   PREDICTED: hypothetical protein 
LOC100292248          0.009   PREDICTED: hypothetical protein 
LOC100131426          0.009   PREDICTED: hypothetical protein 
LOC100290553          0.009   PREDICTED: hypothetical protein XP_002347706 
LOC100289891          0.009   PREDICTED: hypothetical protein XP_002347436 
LOC100131426          0.009   PREDICTED: hypothetical protein 
LOC100287282          0.009   PREDICTED: hypothetical protein XP_002344162 
LOC100288208          0.009   PREDICTED: hypothetical protein XP_002343284 
LOC100131426          0.009   PREDICTED: hypothetical protein isoform 2 
LOC100131426          0.009   PREDICTED: hypothetical protein isoform 1 
LOC388553             0.008   PREDICTED: similar to hCG1645909 
LOC388553             0.008   PREDICTED: similar to hCG1645909 
LOC388553             0.008   PREDICTED: similar to hCG1645909 
PDZD2                 0.008   PDZ domain containing 2 
LOC100291843          0.008   PREDICTED: hypothetical protein XP_002344913 
LOC100290783          0.008   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.008   PREDICTED: hypothetical protein XP_002343435 
DDX51                 0.007   DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 
PSD4                  0.007   pleckstrin and Sec7 domain containing 4 
KLHL23                0.007   kelch-like 23 
LOC100128398          0.007   PREDICTED: hypothetical protein 
LOC100293848          0.007   PREDICTED: hypothetical protein 
LOC100128398          0.007   PREDICTED: hypothetical protein 
LOC100290829          0.007   PREDICTED: hypothetical protein XP_002346522 
LOC100128398          0.007   PREDICTED: hypothetical protein 
LOC100288535          0.007   PREDICTED: hypothetical protein XP_002342360 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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