Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 22748655

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22748655 hypothetical protein LOC93190 [Homo sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22748655 hypothetical protein LOC93190 [Homo sapiens]              428   e-120
gi|148236531 hypothetical protein LOC339779 [Homo sapiens]             32   0.34 
gi|38348280 SH2 domain containing 6 [Homo sapiens]                     31   0.58 
gi|33356556 amelogenin (X chromosome) isoform 3 precursor [Homo ...    30   0.99 
gi|33356558 amelogenin (X chromosome) isoform 2 precursor [Homo ...    30   0.99 
gi|4502071 amelogenin (X chromosome) isoform 1 precursor [Homo s...    30   0.99 
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]             29   2.2  
gi|122937211 KIAA0368 protein [Homo sapiens]                           29   2.2  
gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo ...    28   3.7  
gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo ...    28   3.7  
gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo ...    28   3.7  
gi|189491742 ataxin 7 isoform b [Homo sapiens]                         28   3.7  
gi|4506797 ataxin 7 isoform a [Homo sapiens]                           28   3.7  
gi|76880486 activating signal cointegrator 1 complex subunit 3 i...    28   3.7  
gi|18959210 WIRE protein [Homo sapiens]                                28   3.7  
gi|116875767 tight junction protein 1 isoform a [Homo sapiens]         28   4.9  
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ...    28   4.9  
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ...    28   4.9  
gi|157388908 hypothetical protein LOC54954 [Homo sapiens]              28   4.9  
gi|210032580 SET domain containing 1B [Homo sapiens]                   28   4.9  
gi|116875765 tight junction protein 1 isoform b [Homo sapiens]         28   6.4  
gi|239740972 PREDICTED: hypothetical protein [Homo sapiens]            28   6.4  
gi|45120115 hypothetical protein LOC56905 [Homo sapiens]               28   6.4  
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]       27   8.4  
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]    27   8.4  
gi|12232431 hypothetical protein LOC64776 [Homo sapiens]               27   8.4  
gi|61966923 forkhead box B2 [Homo sapiens]                             27   8.4  

>gi|22748655 hypothetical protein LOC93190 [Homo sapiens]
          Length = 194

 Score =  428 bits (1100), Expect = e-120
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MFLTAVNPQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDH 60
           MFLTAVNPQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDH
Sbjct: 1   MFLTAVNPQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDH 60

Query: 61  RPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQ 120
           RPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQ
Sbjct: 61  RPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQ 120

Query: 121 KLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHA 180
           KLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHA
Sbjct: 121 KLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHA 180

Query: 181 VPVPPHRLHPLPHF 194
           VPVPPHRLHPLPHF
Sbjct: 181 VPVPPHRLHPLPHF 194


>gi|148236531 hypothetical protein LOC339779 [Homo sapiens]
          Length = 412

 Score = 32.0 bits (71), Expect = 0.34
 Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 17/94 (18%)

Query: 105 HGYNPGLPPLRTWNGQKLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTS 164
           H Y+P LP   T+  Q  L LP     P  + P+N+ LY       LTP     Q    S
Sbjct: 85  HPYSPSLPSSPTFFHQNYLSLPR----PRASSPSNHWLY---PSPPLTPSFSPSQ-PQNS 136

Query: 165 SYPRPPLCAMSWREH--------AVPVPP-HRLH 189
           S P  P  + S  E           P PP HRLH
Sbjct: 137 SLPHSPCQSPSHPEELHSSTLTSPGPSPPSHRLH 170


>gi|38348280 SH2 domain containing 6 [Homo sapiens]
          Length = 175

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 162 YTSSYPRPPLCAMSWREHAVPVPPHRLHP 190
           Y SSYP PP   +S R H  P PPH   P
Sbjct: 2   YASSYPPPP--QLSPRSHLCPPPPHPTPP 28


>gi|33356556 amelogenin (X chromosome) isoform 3 precursor [Homo
           sapiens]
          Length = 205

 Score = 30.4 bits (67), Expect = 0.99
 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 22/151 (14%)

Query: 45  TPQSIYRKEYIPFPDHRPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNR 104
           TP   Y+    P+P +  + +  W   + +  L  +H  TH  +P H   +         
Sbjct: 51  TPLKWYQSIRPPYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVP------- 103

Query: 105 HGYNPGLP--PLRTWNGQKLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTY 162
               P +P  P+    GQ  +  P +   P L PP       Q  Q Q           +
Sbjct: 104 -AQQPVIPQQPMMPVPGQHSM-TPIQHHQPNLPPPAQQPYQPQPVQPQ----------PH 151

Query: 163 TSSYPRPPLCAMSWREHAVPVPP-HRLHPLP 192
               P+PP+  M       P+PP   + PLP
Sbjct: 152 QPMQPQPPVHPMQPLPPQPPLPPMFPMQPLP 182


>gi|33356558 amelogenin (X chromosome) isoform 2 precursor [Homo
           sapiens]
          Length = 175

 Score = 30.4 bits (67), Expect = 0.99
 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 22/151 (14%)

Query: 45  TPQSIYRKEYIPFPDHRPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNR 104
           TP   Y+    P+P +  + +  W   + +  L  +H  TH  +P H   +         
Sbjct: 21  TPLKWYQSIRPPYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVP------- 73

Query: 105 HGYNPGLP--PLRTWNGQKLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTY 162
               P +P  P+    GQ  +  P +   P L PP       Q  Q Q           +
Sbjct: 74  -AQQPVIPQQPMMPVPGQHSM-TPIQHHQPNLPPPAQQPYQPQPVQPQ----------PH 121

Query: 163 TSSYPRPPLCAMSWREHAVPVPP-HRLHPLP 192
               P+PP+  M       P+PP   + PLP
Sbjct: 122 QPMQPQPPVHPMQPLPPQPPLPPMFPMQPLP 152


>gi|4502071 amelogenin (X chromosome) isoform 1 precursor [Homo
           sapiens]
          Length = 191

 Score = 30.4 bits (67), Expect = 0.99
 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 22/151 (14%)

Query: 45  TPQSIYRKEYIPFPDHRPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNR 104
           TP   Y+    P+P +  + +  W   + +  L  +H  TH  +P H   +         
Sbjct: 37  TPLKWYQSIRPPYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVP------- 89

Query: 105 HGYNPGLP--PLRTWNGQKLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTY 162
               P +P  P+    GQ  +  P +   P L PP       Q  Q Q           +
Sbjct: 90  -AQQPVIPQQPMMPVPGQHSM-TPIQHHQPNLPPPAQQPYQPQPVQPQ----------PH 137

Query: 163 TSSYPRPPLCAMSWREHAVPVPP-HRLHPLP 192
               P+PP+  M       P+PP   + PLP
Sbjct: 138 QPMQPQPPVHPMQPLPPQPPLPPMFPMQPLP 168


>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
          Length = 4624

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 14   PSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDHRPDQISRWYG 70
            PSWQ   K  T    GN+++  ++F +DT       +   Y   PD+  +   R  G
Sbjct: 3348 PSWQESLKLMT---AGNFLQNLQQFPKDTINEEVIEFLSPYFEMPDYNIETAKRVCG 3401


>gi|122937211 KIAA0368 protein [Homo sapiens]
          Length = 2017

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 33 EERRKFTRDTDKTPQSIYRKEYIPFPDHRPDQISRW 68
          + R+K      K   S YRKE+ PF +H+P     W
Sbjct: 6  KRRQKVKISISKINHSSYRKEHRPFWEHQPPPHQNW 41


>gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo
           sapiens]
          Length = 212

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 31  WMEERRKFTRDTDKT---PQSIYRKEYIPFPDHRPD 63
           W  +RR  TR    T   P S +R   + FP+HRP+
Sbjct: 175 WSSQRRSVTRPATATYSEPHSAHRGCGLLFPNHRPE 210


>gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo
           sapiens]
          Length = 212

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 31  WMEERRKFTRDTDKT---PQSIYRKEYIPFPDHRPD 63
           W  +RR  TR    T   P S +R   + FP+HRP+
Sbjct: 175 WSSQRRSVTRPATATYSEPHSAHRGCGLLFPNHRPE 210


>gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo
           sapiens]
          Length = 212

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 31  WMEERRKFTRDTDKT---PQSIYRKEYIPFPDHRPD 63
           W  +RR  TR    T   P S +R   + FP+HRP+
Sbjct: 175 WSSQRRSVTRPATATYSEPHSAHRGCGLLFPNHRPE 210


>gi|189491742 ataxin 7 isoform b [Homo sapiens]
          Length = 945

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 153 PKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPPHRLHPLPH 193
           P    K   +T S PRPP C  + +  + P+ P  +H  PH
Sbjct: 439 PFVASKPKPHTPSLPRPPGCP-AQQGGSAPIDPPPVHESPH 478


>gi|4506797 ataxin 7 isoform a [Homo sapiens]
          Length = 892

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 153 PKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPPHRLHPLPH 193
           P    K   +T S PRPP C  + +  + P+ P  +H  PH
Sbjct: 439 PFVASKPKPHTPSLPRPPGCP-AQQGGSAPIDPPPVHESPH 478


>gi|76880486 activating signal cointegrator 1 complex subunit 3
            isoform a [Homo sapiens]
          Length = 2202

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 12/55 (21%)

Query: 67   RWYGKRKVEGLPYKHLITHHQEPPHRYLI------------STYDDHYNRHGYNP 109
            RW G   V  + ++HLI   + PPH  L+              Y+  YN   +NP
Sbjct: 1275 RWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNP 1329


>gi|18959210 WIRE protein [Homo sapiens]
          Length = 440

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 134 LAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPPHRLH 189
           LAPP        L   +  P A    S   +  P PP+     R+   P PP+R+H
Sbjct: 294 LAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRMH 349


>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
          Length = 1748

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 21/116 (18%)

Query: 8    PQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIP----------- 56
            P P ++ S Q ++  +      + M   ++ +  +   P  +YRK+  P           
Sbjct: 961  PAPSTSYSPQADSLRTPSTEAAHIMLRDQEPSLSSHVDPTKVYRKDPYPEEMMRQNHVLK 1020

Query: 57   -----FPDHRPDQISRWYGKRKVEGLPY--KHLITHHQEPPHRYLISTYDDHYNRH 105
                  P HRPD+      + +   LPY  K      ++P +RY  S+Y D ++R+
Sbjct: 1021 QPAVSHPGHRPDKEPNLTYEPQ---LPYVEKQASRDLEQPTYRYESSSYTDQFSRN 1073


>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
           isoform 1 [Homo sapiens]
          Length = 1112

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 31  WMEERRKFTRDTDKTPQSIYRKEYIPFPDHRP-----DQISRWYGKRKVEGLPYKHLITH 85
           W+ E    +   D+ P++++ +E    P HRP     ++++R    RK E       I  
Sbjct: 535 WINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEADEEELARRREARKQEQANNPFYIKS 594

Query: 86  HQEPPHRY 93
              P  RY
Sbjct: 595 SPSPQKRY 602


>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
           isoform 2 [Homo sapiens]
          Length = 1153

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 31  WMEERRKFTRDTDKTPQSIYRKEYIPFPDHRP-----DQISRWYGKRKVEGLPYKHLITH 85
           W+ E    +   D+ P++++ +E    P HRP     ++++R    RK E       I  
Sbjct: 626 WINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEADEEELARRREARKQEQANNPFYIKS 685

Query: 86  HQEPPHRY 93
              P  RY
Sbjct: 686 SPSPQKRY 693


>gi|157388908 hypothetical protein LOC54954 [Homo sapiens]
          Length = 1096

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 13/107 (12%)

Query: 82  LITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQKLL---WLPEKSDFPLLAPPT 138
           L+ H  E    Y +     +Y+ H          +WNG+ L    +L ++    L     
Sbjct: 257 LLAHDSE----YALYNIPSYYSSHALK------LSWNGKNLTTNQFLMQEVAKQLGLKRM 306

Query: 139 NYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPP 185
           N+ ++  L    + P   L    ++   P  PL ++  R H + +PP
Sbjct: 307 NFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPP 353


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 130  DFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPPHRLH 189
            D PL+ PP    L  +L      P+  +  ST+      P    + +R   +P PP  L 
Sbjct: 1490 DGPLVRPPAGAALGRELLLLPGQPQTPVFPSTHD-----PRTVTLDFRNAGIPAPPPPLP 1544

Query: 190  PLP 192
            P P
Sbjct: 1545 PQP 1547


>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
          Length = 1668

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 11/71 (15%)

Query: 43  DKTPQSIYRKEYI------PFPDHRPDQISRWYGKRKVEGLPY--KHLITHHQEPPHRYL 94
           D  P+ + R+ ++        P HRPD+      + +   LPY  K      ++P +RY 
Sbjct: 926 DPYPEEMMRQNHVLKQPAVSHPGHRPDKEPNLTYEPQ---LPYVEKQASRDLEQPTYRYE 982

Query: 95  ISTYDDHYNRH 105
            S+Y D ++R+
Sbjct: 983 SSSYTDQFSRN 993


>gi|239740972 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 389

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 133 LLAPPTNYGLYEQLKQRQLTPKAGL--KQSTYTSSYPRPPLCAMSW-----REHAVPVPP 185
           L  P      ++QL   QL P +GL    S +T ++P P    +SW     R   V   P
Sbjct: 133 LWTPQAKLPTFQQLLHTQLLPPSGLFRPSSCFTRAFPGPTF--VSWQPSLARFLPVSQQP 190

Query: 186 HRLHPLPH 193
            +   LPH
Sbjct: 191 RQAQVLPH 198


>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
          Length = 1047

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 21/67 (31%)

Query: 146 LKQRQLTPKAGLKQSTYTSSYPRPPLCAMS------WREHAVPV-------------PPH 186
           L++ Q     G   S YT  YPR    AMS      W + A P+             PPH
Sbjct: 214 LEKYQTIHSTGFLASRYTGPYPRNSKQAMSEGPSSPWTQLAQPLGPPCQDTGPTHYPPPH 273

Query: 187 RLHPLPH 193
             HP PH
Sbjct: 274 --HPPPH 278


>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
          Length = 499

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 81  HLITHHQEPPHRYLISTYDDHYNRHGYNPGLPP 113
           +++T H E  ++ +   +D+    H   PGLPP
Sbjct: 105 YVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPP 137


>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
          Length = 273

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 74  VEGLPYKHLITHHQEPPH-RYLISTYDDHYNRHGYNPGLPP 113
           V+ LP K+      + P+ R+L ST    Y+ HG   G PP
Sbjct: 56  VQSLPLKNPFYDSSDNPYTRWLASTEGLQYSLHGLAAGAPP 96


>gi|12232431 hypothetical protein LOC64776 [Homo sapiens]
          Length = 150

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 21/98 (21%)

Query: 19  ETKYSTKVLTGNWMEERRKFTRDTDKTP---------QSIYRKEY---IPFPDHRPDQIS 66
           E  YS + L GNW +ER          P         ++ Y   Y   +P   HR  +  
Sbjct: 61  ENTYSNRTLMGNWNQERYDLRNIVQPKPLPSQFGHYFETTYDTSYNNKMPLSTHRFKREP 120

Query: 67  RWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNR 104
            W+   + E  P ++  T           STY + Y++
Sbjct: 121 HWFPGHQPELDPPRYKCTEK---------STYMNSYSK 149


>gi|61966923 forkhead box B2 [Homo sapiens]
          Length = 432

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 78  PYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPP 113
           P  HL  HH   PH +       H++ H + P  PP
Sbjct: 132 PGGHLHPHHHHHPHHHHHHHAAAHHHHHHHPPQPPP 167


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,538,168
Number of Sequences: 37866
Number of extensions: 549202
Number of successful extensions: 1228
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 32
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press