BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|22748655 hypothetical protein LOC93190 [Homo sapiens] (194 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|22748655 hypothetical protein LOC93190 [Homo sapiens] 428 e-120 gi|148236531 hypothetical protein LOC339779 [Homo sapiens] 32 0.34 gi|38348280 SH2 domain containing 6 [Homo sapiens] 31 0.58 gi|33356556 amelogenin (X chromosome) isoform 3 precursor [Homo ... 30 0.99 gi|33356558 amelogenin (X chromosome) isoform 2 precursor [Homo ... 30 0.99 gi|4502071 amelogenin (X chromosome) isoform 1 precursor [Homo s... 30 0.99 gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] 29 2.2 gi|122937211 KIAA0368 protein [Homo sapiens] 29 2.2 gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo ... 28 3.7 gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo ... 28 3.7 gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo ... 28 3.7 gi|189491742 ataxin 7 isoform b [Homo sapiens] 28 3.7 gi|4506797 ataxin 7 isoform a [Homo sapiens] 28 3.7 gi|76880486 activating signal cointegrator 1 complex subunit 3 i... 28 3.7 gi|18959210 WIRE protein [Homo sapiens] 28 3.7 gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 28 4.9 gi|117553584 adaptor-related protein complex 3, delta 1 subunit ... 28 4.9 gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 28 4.9 gi|157388908 hypothetical protein LOC54954 [Homo sapiens] 28 4.9 gi|210032580 SET domain containing 1B [Homo sapiens] 28 4.9 gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 28 6.4 gi|239740972 PREDICTED: hypothetical protein [Homo sapiens] 28 6.4 gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 28 6.4 gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 27 8.4 gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] 27 8.4 gi|12232431 hypothetical protein LOC64776 [Homo sapiens] 27 8.4 gi|61966923 forkhead box B2 [Homo sapiens] 27 8.4 >gi|22748655 hypothetical protein LOC93190 [Homo sapiens] Length = 194 Score = 428 bits (1100), Expect = e-120 Identities = 194/194 (100%), Positives = 194/194 (100%) Query: 1 MFLTAVNPQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDH 60 MFLTAVNPQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDH Sbjct: 1 MFLTAVNPQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDH 60 Query: 61 RPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQ 120 RPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQ Sbjct: 61 RPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQ 120 Query: 121 KLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHA 180 KLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHA Sbjct: 121 KLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHA 180 Query: 181 VPVPPHRLHPLPHF 194 VPVPPHRLHPLPHF Sbjct: 181 VPVPPHRLHPLPHF 194 >gi|148236531 hypothetical protein LOC339779 [Homo sapiens] Length = 412 Score = 32.0 bits (71), Expect = 0.34 Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 17/94 (18%) Query: 105 HGYNPGLPPLRTWNGQKLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTS 164 H Y+P LP T+ Q L LP P + P+N+ LY LTP Q S Sbjct: 85 HPYSPSLPSSPTFFHQNYLSLPR----PRASSPSNHWLY---PSPPLTPSFSPSQ-PQNS 136 Query: 165 SYPRPPLCAMSWREH--------AVPVPP-HRLH 189 S P P + S E P PP HRLH Sbjct: 137 SLPHSPCQSPSHPEELHSSTLTSPGPSPPSHRLH 170 >gi|38348280 SH2 domain containing 6 [Homo sapiens] Length = 175 Score = 31.2 bits (69), Expect = 0.58 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Query: 162 YTSSYPRPPLCAMSWREHAVPVPPHRLHP 190 Y SSYP PP +S R H P PPH P Sbjct: 2 YASSYPPPP--QLSPRSHLCPPPPHPTPP 28 >gi|33356556 amelogenin (X chromosome) isoform 3 precursor [Homo sapiens] Length = 205 Score = 30.4 bits (67), Expect = 0.99 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 22/151 (14%) Query: 45 TPQSIYRKEYIPFPDHRPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNR 104 TP Y+ P+P + + + W + + L +H TH +P H + Sbjct: 51 TPLKWYQSIRPPYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVP------- 103 Query: 105 HGYNPGLP--PLRTWNGQKLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTY 162 P +P P+ GQ + P + P L PP Q Q Q + Sbjct: 104 -AQQPVIPQQPMMPVPGQHSM-TPIQHHQPNLPPPAQQPYQPQPVQPQ----------PH 151 Query: 163 TSSYPRPPLCAMSWREHAVPVPP-HRLHPLP 192 P+PP+ M P+PP + PLP Sbjct: 152 QPMQPQPPVHPMQPLPPQPPLPPMFPMQPLP 182 >gi|33356558 amelogenin (X chromosome) isoform 2 precursor [Homo sapiens] Length = 175 Score = 30.4 bits (67), Expect = 0.99 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 22/151 (14%) Query: 45 TPQSIYRKEYIPFPDHRPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNR 104 TP Y+ P+P + + + W + + L +H TH +P H + Sbjct: 21 TPLKWYQSIRPPYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVP------- 73 Query: 105 HGYNPGLP--PLRTWNGQKLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTY 162 P +P P+ GQ + P + P L PP Q Q Q + Sbjct: 74 -AQQPVIPQQPMMPVPGQHSM-TPIQHHQPNLPPPAQQPYQPQPVQPQ----------PH 121 Query: 163 TSSYPRPPLCAMSWREHAVPVPP-HRLHPLP 192 P+PP+ M P+PP + PLP Sbjct: 122 QPMQPQPPVHPMQPLPPQPPLPPMFPMQPLP 152 >gi|4502071 amelogenin (X chromosome) isoform 1 precursor [Homo sapiens] Length = 191 Score = 30.4 bits (67), Expect = 0.99 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 22/151 (14%) Query: 45 TPQSIYRKEYIPFPDHRPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNR 104 TP Y+ P+P + + + W + + L +H TH +P H + Sbjct: 37 TPLKWYQSIRPPYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVP------- 89 Query: 105 HGYNPGLP--PLRTWNGQKLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTY 162 P +P P+ GQ + P + P L PP Q Q Q + Sbjct: 90 -AQQPVIPQQPMMPVPGQHSM-TPIQHHQPNLPPPAQQPYQPQPVQPQ----------PH 137 Query: 163 TSSYPRPPLCAMSWREHAVPVPP-HRLHPLP 192 P+PP+ M P+PP + PLP Sbjct: 138 QPMQPQPPVHPMQPLPPQPPLPPMFPMQPLP 168 >gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] Length = 4624 Score = 29.3 bits (64), Expect = 2.2 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 14 PSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDHRPDQISRWYG 70 PSWQ K T GN+++ ++F +DT + Y PD+ + R G Sbjct: 3348 PSWQESLKLMT---AGNFLQNLQQFPKDTINEEVIEFLSPYFEMPDYNIETAKRVCG 3401 >gi|122937211 KIAA0368 protein [Homo sapiens] Length = 2017 Score = 29.3 bits (64), Expect = 2.2 Identities = 13/36 (36%), Positives = 18/36 (50%) Query: 33 EERRKFTRDTDKTPQSIYRKEYIPFPDHRPDQISRW 68 + R+K K S YRKE+ PF +H+P W Sbjct: 6 KRRQKVKISISKINHSSYRKEHRPFWEHQPPPHQNW 41 >gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo sapiens] Length = 212 Score = 28.5 bits (62), Expect = 3.7 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Query: 31 WMEERRKFTRDTDKT---PQSIYRKEYIPFPDHRPD 63 W +RR TR T P S +R + FP+HRP+ Sbjct: 175 WSSQRRSVTRPATATYSEPHSAHRGCGLLFPNHRPE 210 >gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo sapiens] Length = 212 Score = 28.5 bits (62), Expect = 3.7 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Query: 31 WMEERRKFTRDTDKT---PQSIYRKEYIPFPDHRPD 63 W +RR TR T P S +R + FP+HRP+ Sbjct: 175 WSSQRRSVTRPATATYSEPHSAHRGCGLLFPNHRPE 210 >gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo sapiens] Length = 212 Score = 28.5 bits (62), Expect = 3.7 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Query: 31 WMEERRKFTRDTDKT---PQSIYRKEYIPFPDHRPD 63 W +RR TR T P S +R + FP+HRP+ Sbjct: 175 WSSQRRSVTRPATATYSEPHSAHRGCGLLFPNHRPE 210 >gi|189491742 ataxin 7 isoform b [Homo sapiens] Length = 945 Score = 28.5 bits (62), Expect = 3.7 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 153 PKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPPHRLHPLPH 193 P K +T S PRPP C + + + P+ P +H PH Sbjct: 439 PFVASKPKPHTPSLPRPPGCP-AQQGGSAPIDPPPVHESPH 478 >gi|4506797 ataxin 7 isoform a [Homo sapiens] Length = 892 Score = 28.5 bits (62), Expect = 3.7 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 153 PKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPPHRLHPLPH 193 P K +T S PRPP C + + + P+ P +H PH Sbjct: 439 PFVASKPKPHTPSLPRPPGCP-AQQGGSAPIDPPPVHESPH 478 >gi|76880486 activating signal cointegrator 1 complex subunit 3 isoform a [Homo sapiens] Length = 2202 Score = 28.5 bits (62), Expect = 3.7 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 12/55 (21%) Query: 67 RWYGKRKVEGLPYKHLITHHQEPPHRYLI------------STYDDHYNRHGYNP 109 RW G V + ++HLI + PPH L+ Y+ YN +NP Sbjct: 1275 RWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNP 1329 >gi|18959210 WIRE protein [Homo sapiens] Length = 440 Score = 28.5 bits (62), Expect = 3.7 Identities = 17/56 (30%), Positives = 23/56 (41%) Query: 134 LAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPPHRLH 189 LAPP L + P A S + P PP+ R+ P PP+R+H Sbjct: 294 LAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRMH 349 >gi|116875767 tight junction protein 1 isoform a [Homo sapiens] Length = 1748 Score = 28.1 bits (61), Expect = 4.9 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 21/116 (18%) Query: 8 PQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIP----------- 56 P P ++ S Q ++ + + M ++ + + P +YRK+ P Sbjct: 961 PAPSTSYSPQADSLRTPSTEAAHIMLRDQEPSLSSHVDPTKVYRKDPYPEEMMRQNHVLK 1020 Query: 57 -----FPDHRPDQISRWYGKRKVEGLPY--KHLITHHQEPPHRYLISTYDDHYNRH 105 P HRPD+ + + LPY K ++P +RY S+Y D ++R+ Sbjct: 1021 QPAVSHPGHRPDKEPNLTYEPQ---LPYVEKQASRDLEQPTYRYESSSYTDQFSRN 1073 >gi|117553584 adaptor-related protein complex 3, delta 1 subunit isoform 1 [Homo sapiens] Length = 1112 Score = 28.1 bits (61), Expect = 4.9 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 31 WMEERRKFTRDTDKTPQSIYRKEYIPFPDHRP-----DQISRWYGKRKVEGLPYKHLITH 85 W+ E + D+ P++++ +E P HRP ++++R RK E I Sbjct: 535 WINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEADEEELARRREARKQEQANNPFYIKS 594 Query: 86 HQEPPHRY 93 P RY Sbjct: 595 SPSPQKRY 602 >gi|117553580 adaptor-related protein complex 3, delta 1 subunit isoform 2 [Homo sapiens] Length = 1153 Score = 28.1 bits (61), Expect = 4.9 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 31 WMEERRKFTRDTDKTPQSIYRKEYIPFPDHRP-----DQISRWYGKRKVEGLPYKHLITH 85 W+ E + D+ P++++ +E P HRP ++++R RK E I Sbjct: 626 WINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEADEEELARRREARKQEQANNPFYIKS 685 Query: 86 HQEPPHRY 93 P RY Sbjct: 686 SPSPQKRY 693 >gi|157388908 hypothetical protein LOC54954 [Homo sapiens] Length = 1096 Score = 28.1 bits (61), Expect = 4.9 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 13/107 (12%) Query: 82 LITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQKLL---WLPEKSDFPLLAPPT 138 L+ H E Y + +Y+ H +WNG+ L +L ++ L Sbjct: 257 LLAHDSE----YALYNIPSYYSSHALK------LSWNGKNLTTNQFLMQEVAKQLGLKRM 306 Query: 139 NYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPP 185 N+ ++ L + P L ++ P PL ++ R H + +PP Sbjct: 307 NFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPP 353 >gi|210032580 SET domain containing 1B [Homo sapiens] Length = 1923 Score = 28.1 bits (61), Expect = 4.9 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 130 DFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPPHRLH 189 D PL+ PP L +L P+ + ST+ P + +R +P PP L Sbjct: 1490 DGPLVRPPAGAALGRELLLLPGQPQTPVFPSTHD-----PRTVTLDFRNAGIPAPPPPLP 1544 Query: 190 PLP 192 P P Sbjct: 1545 PQP 1547 >gi|116875765 tight junction protein 1 isoform b [Homo sapiens] Length = 1668 Score = 27.7 bits (60), Expect = 6.4 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 11/71 (15%) Query: 43 DKTPQSIYRKEYI------PFPDHRPDQISRWYGKRKVEGLPY--KHLITHHQEPPHRYL 94 D P+ + R+ ++ P HRPD+ + + LPY K ++P +RY Sbjct: 926 DPYPEEMMRQNHVLKQPAVSHPGHRPDKEPNLTYEPQ---LPYVEKQASRDLEQPTYRYE 982 Query: 95 ISTYDDHYNRH 105 S+Y D ++R+ Sbjct: 983 SSSYTDQFSRN 993 >gi|239740972 PREDICTED: hypothetical protein [Homo sapiens] Length = 389 Score = 27.7 bits (60), Expect = 6.4 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 9/68 (13%) Query: 133 LLAPPTNYGLYEQLKQRQLTPKAGL--KQSTYTSSYPRPPLCAMSW-----REHAVPVPP 185 L P ++QL QL P +GL S +T ++P P +SW R V P Sbjct: 133 LWTPQAKLPTFQQLLHTQLLPPSGLFRPSSCFTRAFPGPTF--VSWQPSLARFLPVSQQP 190 Query: 186 HRLHPLPH 193 + LPH Sbjct: 191 RQAQVLPH 198 >gi|45120115 hypothetical protein LOC56905 [Homo sapiens] Length = 1047 Score = 27.7 bits (60), Expect = 6.4 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 21/67 (31%) Query: 146 LKQRQLTPKAGLKQSTYTSSYPRPPLCAMS------WREHAVPV-------------PPH 186 L++ Q G S YT YPR AMS W + A P+ PPH Sbjct: 214 LEKYQTIHSTGFLASRYTGPYPRNSKQAMSEGPSSPWTQLAQPLGPPCQDTGPTHYPPPH 273 Query: 187 RLHPLPH 193 HP PH Sbjct: 274 --HPPPH 278 >gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] Length = 499 Score = 27.3 bits (59), Expect = 8.4 Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 81 HLITHHQEPPHRYLISTYDDHYNRHGYNPGLPP 113 +++T H E ++ + +D+ H PGLPP Sbjct: 105 YVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPP 137 >gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] Length = 273 Score = 27.3 bits (59), Expect = 8.4 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 74 VEGLPYKHLITHHQEPPH-RYLISTYDDHYNRHGYNPGLPP 113 V+ LP K+ + P+ R+L ST Y+ HG G PP Sbjct: 56 VQSLPLKNPFYDSSDNPYTRWLASTEGLQYSLHGLAAGAPP 96 >gi|12232431 hypothetical protein LOC64776 [Homo sapiens] Length = 150 Score = 27.3 bits (59), Expect = 8.4 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 21/98 (21%) Query: 19 ETKYSTKVLTGNWMEERRKFTRDTDKTP---------QSIYRKEY---IPFPDHRPDQIS 66 E YS + L GNW +ER P ++ Y Y +P HR + Sbjct: 61 ENTYSNRTLMGNWNQERYDLRNIVQPKPLPSQFGHYFETTYDTSYNNKMPLSTHRFKREP 120 Query: 67 RWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNR 104 W+ + E P ++ T STY + Y++ Sbjct: 121 HWFPGHQPELDPPRYKCTEK---------STYMNSYSK 149 >gi|61966923 forkhead box B2 [Homo sapiens] Length = 432 Score = 27.3 bits (59), Expect = 8.4 Identities = 12/36 (33%), Positives = 16/36 (44%) Query: 78 PYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPP 113 P HL HH PH + H++ H + P PP Sbjct: 132 PGGHLHPHHHHHPHHHHHHHAAAHHHHHHHPPQPPP 167 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.137 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,538,168 Number of Sequences: 37866 Number of extensions: 549202 Number of successful extensions: 1228 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 1218 Number of HSP's gapped (non-prelim): 32 length of query: 194 length of database: 18,247,518 effective HSP length: 97 effective length of query: 97 effective length of database: 14,574,516 effective search space: 1413728052 effective search space used: 1413728052 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.